protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 723 |
| AcoI | YGGCCR | 1 cut(s) | 115 |
| AcsI | RAATTY | 6 cut(s) | 268, 389, 442, 471, 843, 883 |
| AcuI | CTGAAG | 2 cut(s) | 807, 1055 |
| AcvI | CACGTG | 1 cut(s) | 587 |
| AfaI | GTAC | 2 cut(s) | 81, 537 |
| AjiI | CACGTC | 1 cut(s) | 852 |
| AjnI | CCWGG | 2 cut(s) | 718, 1096 |
| AluBI | AGCT | 4 cut(s) | 130, 209, 221, 656 |
| AluI | AGCT | 4 cut(s) | 130, 209, 221, 656 |
| Alw21I | GWGCWC | 1 cut(s) | 679 |
| Alw26I | GTCTC | 1 cut(s) | 146 |
| AoxI | GGCC | 3 cut(s) | 115, 742, 961 |
| ApeKI | GCWGC | 6 cut(s) | 206, 427, 437, 653, 701, 704 |
| ApoI | RAATTY | 6 cut(s) | 268, 389, 442, 471, 843, 883 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 565 |
| AspS9I | GGNCC | 1 cut(s) | 1094 |
| AsuHPI | GGTGA | 3 cut(s) | 158, 211, 1027 |
| AsuII | TTCGAA | 1 cut(s) | 216 |
| AvaII | GGWCC | 1 cut(s) | 1094 |
| BalI | TGGCCA | 1 cut(s) | 117 |
| BbrPI | CACGTG | 1 cut(s) | 587 |
| BbsI | GAAGAC | 1 cut(s) | 52 |
| Bbv12I | GWGCWC | 1 cut(s) | 679 |
| BbvCI | CCTCAGC | 1 cut(s) | 54 |
| BbvI | GCAGC | 6 cut(s) | 218, 414, 449, 665, 713, 716 |
| BccI | CCATC | 3 cut(s) | 376, 613, 698 |
| BciT130I | CCWGG | 2 cut(s) | 720, 1098 |
| BcoDI | GTCTC | 1 cut(s) | 146 |
| BfaI | CTAG | 4 cut(s) | 542, 558, 758, 1023 |
| BfmI | CTRYAG | 3 cut(s) | 349, 506, 663 |
| BglII | AGATCT | 1 cut(s) | 345 |
| BisI | GCNGC | 6 cut(s) | 207, 428, 438, 654, 702, 705 |
| BlsI | GCNGC | 6 cut(s) | 208, 429, 439, 655, 703, 706 |
| BmcAI | AGTACT | 1 cut(s) | 81 |
| Bme1390I | CCNGG | 2 cut(s) | 720, 1098 |
| Bme18I | GGWCC | 1 cut(s) | 1094 |
| BmgBI | CACGTC | 1 cut(s) | 852 |
| BmgT120I | GGNCC | 1 cut(s) | 1094 |
| BmiI | GGNNCC | 1 cut(s) | 736 |
| BmrFI | CCNGG | 2 cut(s) | 720, 1098 |
| BmsI | GCATC | 2 cut(s) | 616, 1041 |
| BpiI | GAAGAC | 1 cut(s) | 52 |
| BpmI | CTGGAG | 1 cut(s) | 435 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| Bpu14I | TTCGAA | 1 cut(s) | 216 |
| BsaAI | YACGTR | 1 cut(s) | 587 |
| BsaJI | CCNNGG | 2 cut(s) | 112, 718 |
| BsaWI | WCCGGW | 1 cut(s) | 1030 |
| Bse1I | ACTGG | 1 cut(s) | 452 |
| Bse3DI | GCAATG | 1 cut(s) | 552 |
| BseBI | CCWGG | 2 cut(s) | 720, 1098 |
| BseDI | CCNNGG | 2 cut(s) | 112, 718 |
| BseGI | GGATG | 3 cut(s) | 391, 631, 1056 |
| BseMI | GCAATG | 1 cut(s) | 552 |
| BseMII | CTCAG | 1 cut(s) | 45 |
| BseNI | ACTGG | 1 cut(s) | 452 |
| BseRI | GAGGAG | 1 cut(s) | 319 |
| BseXI | GCAGC | 6 cut(s) | 218, 414, 449, 665, 713, 716 |
| BsgI | GTGCAG | 2 cut(s) | 413, 456 |
| BshFI | GGCC | 3 cut(s) | 117, 744, 963 |
| BsiHKAI | GWGCWC | 1 cut(s) | 679 |
| BsiSI | CCGG | 1 cut(s) | 1031 |
| BsmAI | GTCTC | 1 cut(s) | 146 |
| BsmI | GAATGC | 2 cut(s) | 707, 1011 |
| BsnI | GGCC | 3 cut(s) | 117, 744, 963 |
| Bsp119I | TTCGAA | 1 cut(s) | 216 |
| Bsp1286I | GDGCHC | 1 cut(s) | 679 |
| Bsp143I | GATC | 1 cut(s) | 345 |
| Bsp19I | CCATGG | 1 cut(s) | 112 |
| BspACI | CCGC | 1 cut(s) | 723 |
| BspANI | GGCC | 3 cut(s) | 117, 744, 963 |
| BspCNI | CTCAG | 1 cut(s) | 46 |
| BspLI | GGNNCC | 1 cut(s) | 736 |
| BspT104I | TTCGAA | 1 cut(s) | 216 |
| BsrDI | GCAATG | 1 cut(s) | 552 |
| BsrI | ACTGG | 1 cut(s) | 452 |
| BssECI | CCNNGG | 2 cut(s) | 112, 718 |
| BssMI | GATC | 1 cut(s) | 345 |
| BssT1I | CCWWGG | 1 cut(s) | 112 |
| Bst2UI | CCWGG | 2 cut(s) | 720, 1098 |
| Bst4CI | ACNGT | 5 cut(s) | 181, 434, 510, 667, 1125 |
| Bst6I | CTCTTC | 3 cut(s) | 144, 336, 756 |
| BstBAI | YACGTR | 1 cut(s) | 587 |
| BstBI | TTCGAA | 1 cut(s) | 216 |
| BstDEI | CTNAG | 1 cut(s) | 54 |
| BstDSI | CCRYGG | 1 cut(s) | 112 |
| BstEII | GGTNACC | 1 cut(s) | 1033 |
| BstF5I | GGATG | 3 cut(s) | 391, 631, 1056 |
| BstKTI | GATC | 1 cut(s) | 348 |
| BstMAI | GTCTC | 1 cut(s) | 146 |
| BstMBI | GATC | 1 cut(s) | 345 |
| BstNI | CCWGG | 2 cut(s) | 720, 1098 |
| BstPI | GGTNACC | 1 cut(s) | 1033 |
| BstSCI | CCNGG | 2 cut(s) | 718, 1096 |
| BstSFI | CTRYAG | 3 cut(s) | 349, 506, 663 |
| BstV1I | GCAGC | 6 cut(s) | 218, 414, 449, 665, 713, 716 |
| BstV2I | GAAGAC | 1 cut(s) | 52 |
| BstX2I | RGATCY | 1 cut(s) | 345 |
| BstYI | RGATCY | 1 cut(s) | 345 |
| BsuRI | GGCC | 3 cut(s) | 117, 744, 963 |
| BtgI | CCRYGG | 1 cut(s) | 112 |
| BtrI | CACGTC | 1 cut(s) | 852 |
| BtsCI | GGATG | 3 cut(s) | 391, 631, 1056 |
| BtsIMutI | CAGTG | 3 cut(s) | 439, 515, 1130 |
| Cfr13I | GGNCC | 1 cut(s) | 1094 |
| Csp6I | GTAC | 2 cut(s) | 80, 536 |
| CviQI | GTAC | 2 cut(s) | 80, 536 |
| DdeI | CTNAG | 1 cut(s) | 54 |
| DpnI | GATC | 1 cut(s) | 347 |
| DpnII | GATC | 1 cut(s) | 345 |
| EaeI | YGGCCR | 1 cut(s) | 115 |
| Eam1104I | CTCTTC | 3 cut(s) | 144, 336, 756 |
| EarI | CTCTTC | 3 cut(s) | 144, 336, 756 |
| EciI | GGCGGA | 1 cut(s) | 738 |
| Eco130I | CCWWGG | 1 cut(s) | 112 |
| Eco147I | AGGCCT | 1 cut(s) | 744 |
| Eco47I | GGWCC | 1 cut(s) | 1094 |
| Eco57I | CTGAAG | 2 cut(s) | 807, 1055 |
| Eco72I | CACGTG | 1 cut(s) | 587 |
| Eco91I | GGTNACC | 1 cut(s) | 1033 |
| EcoO65I | GGTNACC | 1 cut(s) | 1033 |
| EcoRI | GAATTC | 1 cut(s) | 843 |
| EcoRII | CCWGG | 2 cut(s) | 718, 1096 |
| EcoT14I | CCWWGG | 1 cut(s) | 112 |
| EcoT22I | ATGCAT | 1 cut(s) | 552 |
| ErhI | CCWWGG | 1 cut(s) | 112 |
| Fnu4HI | GCNGC | 6 cut(s) | 207, 428, 438, 654, 702, 705 |
| FokI | GGATG | 3 cut(s) | 398, 638, 1063 |
| Fsp4HI | GCNGC | 6 cut(s) | 207, 428, 438, 654, 702, 705 |
| FspBI | CTAG | 4 cut(s) | 542, 558, 758, 1023 |
| GluI | GCNGC | 6 cut(s) | 207, 428, 438, 654, 702, 705 |
| GsuI | CTGGAG | 1 cut(s) | 435 |
| HaeIII | GGCC | 3 cut(s) | 117, 744, 963 |
| HapII | CCGG | 1 cut(s) | 1031 |
| HinfI | GANTC | 3 cut(s) | 276, 554, 604 |
| HpaII | CCGG | 1 cut(s) | 1031 |
| HphI | GGTGA | 3 cut(s) | 158, 211, 1027 |
| Hpy166II | GTNNAC | 2 cut(s) | 202, 590 |
| Hpy188I | TCNGA | 5 cut(s) | 44, 77, 571, 793, 1074 |
| Hpy188III | TCNNGA | 7 cut(s) | 273, 338, 368, 518, 558, 601, 855 |
| Hpy8I | GTNNAC | 2 cut(s) | 202, 590 |
| HpyAV | CCTTC | 2 cut(s) | 755, 1076 |
| HpyCH4III | ACNGT | 5 cut(s) | 181, 434, 510, 667, 1125 |
| HpyCH4IV | ACGT | 2 cut(s) | 586, 851 |
| HpyCH4V | TGCA | 9 cut(s) | 141, 430, 437, 482, 496, 550, 629, 701, 950 |
| HpyF3I | CTNAG | 1 cut(s) | 54 |
| HpySE526I | ACGT | 2 cut(s) | 586, 851 |
| Kzo9I | GATC | 1 cut(s) | 345 |
| Lsp1109I | GCAGC | 6 cut(s) | 218, 414, 449, 665, 713, 716 |
| LweI | GCATC | 2 cut(s) | 616, 1041 |
| MaeI | CTAG | 4 cut(s) | 542, 558, 758, 1023 |
| MaeII | ACGT | 2 cut(s) | 586, 851 |
| MaeIII | GTNAC | 5 cut(s) | 4, 247, 685, 852, 1033 |
| MalI | GATC | 1 cut(s) | 347 |
| MboI | GATC | 1 cut(s) | 345 |
| MboII | GAAGA | 8 cut(s) | 57, 115, 161, 353, 651, 773, 804, 1061 |
| MflI | RGATCY | 1 cut(s) | 345 |
| MhlI | GDGCHC | 1 cut(s) | 679 |
| MlsI | TGGCCA | 1 cut(s) | 117 |
| MluCI | AATT | 9 cut(s) | 28, 35, 268, 389, 442, 471, 614, 843, 883 |
| MluNI | TGGCCA | 1 cut(s) | 117 |
| MlyI | GAGTC | 1 cut(s) | 270 |
| MnlI | CCTC | 8 cut(s) | 49, 297, 514, 549, 616, 887, 1048, 1071 |
| Mox20I | TGGCCA | 1 cut(s) | 117 |
| Mph1103I | ATGCAT | 1 cut(s) | 552 |
| MroXI | GAANNNNTTC | 1 cut(s) | 565 |
| MscI | TGGCCA | 1 cut(s) | 117 |
| MslI | CAYNNNNRTG | 2 cut(s) | 896, 941 |
| Msp20I | TGGCCA | 1 cut(s) | 117 |
| MspI | CCGG | 1 cut(s) | 1031 |
| MspR9I | CCNGG | 2 cut(s) | 720, 1098 |
| Mva1269I | GAATGC | 2 cut(s) | 707, 1011 |
| MvaI | CCWGG | 2 cut(s) | 720, 1098 |
| NcoI | CCATGG | 1 cut(s) | 112 |
| NdeII | GATC | 1 cut(s) | 345 |
| NlaIV | GGNNCC | 1 cut(s) | 736 |
| NmuCI | GTSAC | 2 cut(s) | 852, 1033 |
| NsiI | ATGCAT | 1 cut(s) | 552 |
| NspV | TTCGAA | 1 cut(s) | 216 |
| PceI | AGGCCT | 1 cut(s) | 744 |
| PctI | GAATGC | 2 cut(s) | 707, 1011 |
| PdmI | GAANNNNTTC | 1 cut(s) | 565 |
| PfeI | GAWTC | 2 cut(s) | 554, 604 |
| PkrI | GCNGC | 6 cut(s) | 208, 429, 439, 655, 703, 706 |
| PleI | GAGTC | 1 cut(s) | 270 |
| PmaCI | CACGTG | 1 cut(s) | 587 |
| PmlI | CACGTG | 1 cut(s) | 587 |
| PpsI | GAGTC | 1 cut(s) | 270 |
| Ppu21I | YACGTR | 1 cut(s) | 587 |
| Psp6I | CCWGG | 2 cut(s) | 718, 1096 |
| PspCI | CACGTG | 1 cut(s) | 587 |
| PspEI | GGTNACC | 1 cut(s) | 1033 |
| PspGI | CCWGG | 2 cut(s) | 718, 1096 |
| PspN4I | GGNNCC | 1 cut(s) | 736 |
| PspPI | GGNCC | 1 cut(s) | 1094 |
| PsuI | RGATCY | 1 cut(s) | 345 |
| RsaI | GTAC | 2 cut(s) | 81, 537 |
| RsaNI | GTAC | 2 cut(s) | 80, 536 |
| RseI | CAYNNNNRTG | 2 cut(s) | 896, 941 |
| SatI | GCNGC | 6 cut(s) | 207, 428, 438, 654, 702, 705 |
| Sau3AI | GATC | 1 cut(s) | 345 |
| Sau96I | GGNCC | 1 cut(s) | 1094 |
| ScaI | AGTACT | 1 cut(s) | 81 |
| SchI | GAGTC | 1 cut(s) | 270 |
| ScrFI | CCNGG | 2 cut(s) | 720, 1098 |
| SduI | GDGCHC | 1 cut(s) | 679 |
| SfaNI | GCATC | 2 cut(s) | 616, 1041 |
| SfcI | CTRYAG | 3 cut(s) | 349, 506, 663 |
| SfuI | TTCGAA | 1 cut(s) | 216 |
| SinI | GGWCC | 1 cut(s) | 1094 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 896, 941 |
| Sse9I | AATT | 9 cut(s) | 28, 35, 268, 389, 442, 471, 614, 843, 883 |
| SseBI | AGGCCT | 1 cut(s) | 744 |
| SsiI | CCGC | 1 cut(s) | 723 |
| SspI | AATATT | 2 cut(s) | 989, 1104 |
| SspMI | CTAG | 4 cut(s) | 542, 558, 758, 1023 |
| StuI | AGGCCT | 1 cut(s) | 744 |
| StyD4I | CCNGG | 2 cut(s) | 718, 1096 |
| StyI | CCWWGG | 1 cut(s) | 112 |
| TaaI | ACNGT | 5 cut(s) | 181, 434, 510, 667, 1125 |
| TaiI | ACGT | 2 cut(s) | 589, 854 |
| TaqI | TCGA | 3 cut(s) | 126, 216, 282 |
| TasI | AATT | 9 cut(s) | 28, 35, 268, 389, 442, 471, 614, 843, 883 |
| TatI | WGTACW | 1 cut(s) | 79 |
| TfiI | GAWTC | 2 cut(s) | 554, 604 |
| TscAI | CASTG | 3 cut(s) | 439, 515, 1130 |
| TseFI | GTSAC | 2 cut(s) | 852, 1033 |
| TseI | GCWGC | 6 cut(s) | 206, 427, 437, 653, 701, 704 |
| Tsp45I | GTSAC | 2 cut(s) | 852, 1033 |
| TspRI | CASTG | 3 cut(s) | 439, 515, 1130 |
| VpaK11BI | GGWCC | 1 cut(s) | 1094 |
| XapI | RAATTY | 6 cut(s) | 268, 389, 442, 471, 843, 883 |
| XbaI | TCTAGA | 1 cut(s) | 557 |
| XmnI | GAANNNNTTC | 1 cut(s) | 565 |
| XspI | CTAG | 4 cut(s) | 542, 558, 758, 1023 |
| ZrmI | AGTACT | 1 cut(s) | 81 |
| Zsp2I | ATGCAT | 1 cut(s) | 552 |