protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 259 - 369 | 3.8e-23 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1216, 1250 |
| Acc65I | GGTACC | 1 cut(s) | 670 |
| AccB1I | GGYRCC | 1 cut(s) | 670 |
| AccI | GTMKAC | 3 cut(s) | 82, 211, 1220 |
| AccII | CGCG | 2 cut(s) | 721, 991 |
| AciI | CCGC | 2 cut(s) | 469, 858 |
| AclWI | GGATC | 1 cut(s) | 1139 |
| AcoI | YGGCCR | 1 cut(s) | 291 |
| AcsI | RAATTY | 4 cut(s) | 198, 338, 420, 480 |
| AcuI | CTGAAG | 1 cut(s) | 942 |
| AfaI | GTAC | 2 cut(s) | 672, 799 |
| AflII | CTTAAG | 1 cut(s) | 272 |
| AgsI | TTSAA | 5 cut(s) | 345, 362, 611, 644, 1267 |
| AjiI | CACGTC | 1 cut(s) | 987 |
| AjnI | CCWGG | 2 cut(s) | 853, 1231 |
| AluBI | AGCT | 3 cut(s) | 299, 356, 1064 |
| AluI | AGCT | 3 cut(s) | 299, 356, 1064 |
| Alw21I | GWGCWC | 1 cut(s) | 814 |
| Alw26I | GTCTC | 2 cut(s) | 506, 1202 |
| AlwI | GGATC | 1 cut(s) | 1139 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 854 |
| Ama87I | CYCGRG | 1 cut(s) | 503 |
| AoxI | GGCC | 3 cut(s) | 291, 439, 1042 |
| ApeKI | GCWGC | 1 cut(s) | 1070 |
| ApoI | RAATTY | 4 cut(s) | 198, 338, 420, 480 |
| AseI | ATTAAT | 1 cut(s) | 318 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 905 |
| Asp718I | GGTACC | 1 cut(s) | 670 |
| AspLEI | GCGC | 1 cut(s) | 721 |
| AspS9I | GGNCC | 2 cut(s) | 440, 1229 |
| AsuHPI | GGTGA | 3 cut(s) | 814, 881, 1042 |
| AvaI | CYCGRG | 1 cut(s) | 503 |
| AvaII | GGWCC | 1 cut(s) | 1229 |
| BaeGI | GKGCMC | 1 cut(s) | 1099 |
| BanI | GGYRCC | 1 cut(s) | 670 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 658, 690 |
| Bbv12I | GWGCWC | 1 cut(s) | 814 |
| BbvI | GCAGC | 1 cut(s) | 1057 |
| BccI | CCATC | 5 cut(s) | 283, 467, 748, 833, 1072 |
| BceAI | ACGGC | 2 cut(s) | 611, 801 |
| BciT130I | CCWGG | 2 cut(s) | 855, 1233 |
| BcoDI | GTCTC | 2 cut(s) | 506, 1202 |
| BfaI | CTAG | 2 cut(s) | 1061, 1092 |
| BfmI | CTRYAG | 1 cut(s) | 837 |
| BfrI | CTTAAG | 1 cut(s) | 272 |
| BisI | GCNGC | 2 cut(s) | 469, 1071 |
| BlsI | GCNGC | 2 cut(s) | 470, 1072 |
| Bme1390I | CCNGG | 2 cut(s) | 855, 1233 |
| Bme18I | GGWCC | 1 cut(s) | 1229 |
| BmeT110I | CYCGRG | 1 cut(s) | 503 |
| BmgBI | CACGTC | 1 cut(s) | 987 |
| BmgT120I | GGNCC | 2 cut(s) | 440, 1229 |
| BmiI | GGNNCC | 2 cut(s) | 442, 672 |
| BmrFI | CCNGG | 2 cut(s) | 855, 1233 |
| BmsI | GCATC | 1 cut(s) | 1176 |
| BpuEI | CTTGAG | 1 cut(s) | 188 |
| BsaI | GGTCTC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 1 cut(s) | 1259 |
| BsaWI | WCCGGW | 1 cut(s) | 883 |
| Bse1I | ACTGG | 1 cut(s) | 1166 |
| BseBI | CCWGG | 2 cut(s) | 855, 1233 |
| BseDI | CCNNGG | 1 cut(s) | 1259 |
| BseGI | GGATG | 2 cut(s) | 294, 1191 |
| BseMII | CTCAG | 1 cut(s) | 189 |
| BseNI | ACTGG | 1 cut(s) | 1166 |
| BseRI | GAGGAG | 2 cut(s) | 773, 1190 |
| BseSI | GKGCMC | 1 cut(s) | 1099 |
| BseXI | GCAGC | 1 cut(s) | 1057 |
| Bsh1236I | CGCG | 2 cut(s) | 721, 991 |
| BshFI | GGCC | 3 cut(s) | 293, 441, 1044 |
| BshNI | GGYRCC | 1 cut(s) | 670 |
| BsiHKAI | GWGCWC | 1 cut(s) | 814 |
| BsiHKCI | CYCGRG | 1 cut(s) | 503 |
| BsiSI | CCGG | 1 cut(s) | 884 |
| BsmAI | GTCTC | 2 cut(s) | 506, 1202 |
| BsmI | GAATGC | 3 cut(s) | 470, 842, 879 |
| BsnI | GGCC | 3 cut(s) | 293, 441, 1044 |
| Bso31I | GGTCTC | 1 cut(s) | 506 |
| BsoBI | CYCGRG | 1 cut(s) | 503 |
| Bsp1286I | GDGCHC | 2 cut(s) | 814, 1099 |
| Bsp1407I | TGTACA | 1 cut(s) | 797 |
| Bsp143I | GATC | 2 cut(s) | 148, 1131 |
| BspACI | CCGC | 2 cut(s) | 469, 858 |
| BspANI | GGCC | 3 cut(s) | 293, 441, 1044 |
| BspCNI | CTCAG | 1 cut(s) | 188 |
| BspFNI | CGCG | 2 cut(s) | 721, 991 |
| BspLI | GGNNCC | 2 cut(s) | 442, 672 |
| BspPI | GGATC | 1 cut(s) | 1139 |
| BspT107I | GGYRCC | 1 cut(s) | 670 |
| BspTI | CTTAAG | 1 cut(s) | 272 |
| BspTNI | GGTCTC | 1 cut(s) | 506 |
| BsrGI | TGTACA | 1 cut(s) | 797 |
| BsrI | ACTGG | 1 cut(s) | 1166 |
| BssECI | CCNNGG | 1 cut(s) | 1259 |
| BssMI | GATC | 2 cut(s) | 148, 1131 |
| BssNAI | GTATAC | 1 cut(s) | 83 |
| BssT1I | CCWWGG | 1 cut(s) | 1259 |
| Bst1107I | GTATAC | 1 cut(s) | 83 |
| Bst2UI | CCWGG | 2 cut(s) | 855, 1233 |
| Bst4CI | ACNGT | 6 cut(s) | 80, 110, 238, 525, 802, 850 |
| BstAFI | CTTAAG | 1 cut(s) | 272 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 691 |
| BstAUI | TGTACA | 1 cut(s) | 797 |
| BstC8I | GCNNGC | 3 cut(s) | 59, 560, 717 |
| BstDEI | CTNAG | 2 cut(s) | 175, 415 |
| BstF5I | GGATG | 2 cut(s) | 294, 1191 |
| BstFNI | CGCG | 2 cut(s) | 721, 991 |
| BstHHI | GCGC | 1 cut(s) | 721 |
| BstKTI | GATC | 2 cut(s) | 151, 1134 |
| BstMAI | GTCTC | 2 cut(s) | 506, 1202 |
| BstMBI | GATC | 2 cut(s) | 148, 1131 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 691, 1070 |
| BstNI | CCWGG | 2 cut(s) | 855, 1233 |
| BstNSI | RCATGY | 3 cut(s) | 374, 562, 576 |
| BstSCI | CCNGG | 2 cut(s) | 853, 1231 |
| BstSFI | CTRYAG | 1 cut(s) | 837 |
| BstSLI | GKGCMC | 1 cut(s) | 1099 |
| BstUI | CGCG | 2 cut(s) | 721, 991 |
| BstV1I | GCAGC | 1 cut(s) | 1057 |
| BstZ17I | GTATAC | 1 cut(s) | 83 |
| BsuRI | GGCC | 3 cut(s) | 293, 441, 1044 |
| BtrI | CACGTC | 1 cut(s) | 987 |
| BtsCI | GGATG | 2 cut(s) | 294, 1191 |
| BtsIMutI | CAGTG | 2 cut(s) | 183, 1173 |
| Cac8I | GCNNGC | 3 cut(s) | 59, 560, 717 |
| CaiI | CAGNNNCTG | 1 cut(s) | 854 |
| CfoI | GCGC | 1 cut(s) | 721 |
| Cfr13I | GGNCC | 2 cut(s) | 440, 1229 |
| Csp6I | GTAC | 2 cut(s) | 671, 798 |
| CviJI | RGCY | 7 cut(s) | 293, 299, 356, 441, 598, 1044, 1064 |
| CviKI_1 | RGCY | 7 cut(s) | 293, 299, 356, 441, 598, 1044, 1064 |
| CviQI | GTAC | 2 cut(s) | 671, 798 |
| DdeI | CTNAG | 2 cut(s) | 175, 415 |
| DpnI | GATC | 2 cut(s) | 150, 1133 |
| DpnII | GATC | 2 cut(s) | 148, 1131 |
| DraI | TTTAAA | 1 cut(s) | 135 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1216, 1250 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1216, 1250 |
| EaeI | YGGCCR | 1 cut(s) | 291 |
| EciI | GGCGGA | 1 cut(s) | 873 |
| Eco130I | CCWWGG | 1 cut(s) | 1259 |
| Eco147I | AGGCCT | 1 cut(s) | 1044 |
| Eco31I | GGTCTC | 1 cut(s) | 506 |
| Eco47I | GGWCC | 1 cut(s) | 1229 |
| Eco57I | CTGAAG | 1 cut(s) | 942 |
| Eco88I | CYCGRG | 1 cut(s) | 503 |
| EcoO109I | RGGNCCY | 1 cut(s) | 440 |
| EcoRI | GAATTC | 1 cut(s) | 198 |
| EcoRII | CCWGG | 2 cut(s) | 853, 1231 |
| EcoT14I | CCWWGG | 1 cut(s) | 1259 |
| EcoT22I | ATGCAT | 1 cut(s) | 687 |
| ErhI | CCWWGG | 1 cut(s) | 1259 |
| FblI | GTMKAC | 3 cut(s) | 82, 211, 1220 |
| Fnu4HI | GCNGC | 2 cut(s) | 469, 1071 |
| FokI | GGATG | 2 cut(s) | 301, 1198 |
| Fsp4HI | GCNGC | 2 cut(s) | 469, 1071 |
| FspBI | CTAG | 2 cut(s) | 1061, 1092 |
| GlaI | GCGC | 1 cut(s) | 720 |
| GluI | GCNGC | 2 cut(s) | 469, 1071 |
| HaeIII | GGCC | 3 cut(s) | 293, 441, 1044 |
| HapII | CCGG | 1 cut(s) | 884 |
| HhaI | GCGC | 1 cut(s) | 721 |
| Hin6I | GCGC | 1 cut(s) | 719 |
| HinP1I | GCGC | 1 cut(s) | 719 |
| HincII | GTYRAC | 2 cut(s) | 6, 106 |
| HindII | GTYRAC | 2 cut(s) | 6, 106 |
| HinfI | GANTC | 3 cut(s) | 48, 228, 978 |
| HpaI | GTTAAC | 2 cut(s) | 6, 106 |
| HpaII | CCGG | 1 cut(s) | 884 |
| HphI | GGTGA | 3 cut(s) | 814, 881, 1042 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 83, 106, 212, 549, 725, 1221 |
| Hpy188I | TCNGA | 2 cut(s) | 679, 928 |
| Hpy188III | TCNNGA | 4 cut(s) | 152, 503, 505, 1207 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 83, 106, 212, 549, 725, 1221 |
| Hpy99I | CGWCG | 1 cut(s) | 991 |
| HpyAV | CCTTC | 1 cut(s) | 684 |
| HpyCH4III | ACNGT | 6 cut(s) | 80, 110, 238, 525, 802, 850 |
| HpyCH4IV | ACGT | 2 cut(s) | 664, 986 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 691, 1070 |
| HpyF3I | CTNAG | 2 cut(s) | 175, 415 |
| HpySE526I | ACGT | 2 cut(s) | 664, 986 |
| HspAI | GCGC | 1 cut(s) | 719 |
| KpnI | GGTACC | 1 cut(s) | 674 |
| KspAI | GTTAAC | 2 cut(s) | 6, 106 |
| Kzo9I | GATC | 2 cut(s) | 148, 1131 |
| LmnI | GCTCC | 1 cut(s) | 398 |
| Lsp1109I | GCAGC | 1 cut(s) | 1057 |
| LweI | GCATC | 1 cut(s) | 1176 |
| MaeI | CTAG | 2 cut(s) | 1061, 1092 |
| MaeII | ACGT | 2 cut(s) | 664, 986 |
| MaeIII | GTNAC | 3 cut(s) | 820, 869, 1081 |
| MalI | GATC | 2 cut(s) | 150, 1133 |
| MboI | GATC | 2 cut(s) | 148, 1131 |
| MboII | GAAGA | 4 cut(s) | 158, 207, 939, 1013 |
| MhlI | GDGCHC | 2 cut(s) | 814, 1099 |
| MluCI | AATT | 7 cut(s) | 198, 338, 420, 480, 578, 963, 1270 |
| MlyI | GAGTC | 1 cut(s) | 42 |
| MnlI | CCTC | 6 cut(s) | 751, 754, 992, 1183, 1206, 1211 |
| Mph1103I | ATGCAT | 1 cut(s) | 687 |
| MroXI | GAANNNNTTC | 1 cut(s) | 905 |
| MseI | TTAA | 9 cut(s) | 5, 35, 105, 134, 140, 255, 273, 318, 651 |
| MslI | CAYNNNNRTG | 3 cut(s) | 393, 827, 884 |
| MspCI | CTTAAG | 1 cut(s) | 272 |
| MspI | CCGG | 1 cut(s) | 884 |
| MspR9I | CCNGG | 2 cut(s) | 855, 1233 |
| Mva1269I | GAATGC | 3 cut(s) | 470, 842, 879 |
| MvaI | CCWGG | 2 cut(s) | 855, 1233 |
| MvnI | CGCG | 2 cut(s) | 721, 991 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 691, 1070 |
| NdeII | GATC | 2 cut(s) | 148, 1131 |
| NlaIV | GGNNCC | 2 cut(s) | 442, 672 |
| NmuCI | GTSAC | 3 cut(s) | 820, 869, 1081 |
| NsiI | ATGCAT | 1 cut(s) | 687 |
| NspI | RCATGY | 3 cut(s) | 374, 562, 576 |
| PaeI | GCATGC | 1 cut(s) | 562 |
| PaeR7I | CTCGAG | 1 cut(s) | 503 |
| PceI | AGGCCT | 1 cut(s) | 1044 |
| PctI | GAATGC | 3 cut(s) | 470, 842, 879 |
| PdmI | GAANNNNTTC | 1 cut(s) | 905 |
| PfeI | GAWTC | 2 cut(s) | 228, 978 |
| PkrI | GCNGC | 2 cut(s) | 470, 1072 |
| PleI | GAGTC | 1 cut(s) | 42 |
| PpsI | GAGTC | 1 cut(s) | 42 |
| PshBI | ATTAAT | 1 cut(s) | 318 |
| Psp6I | CCWGG | 2 cut(s) | 853, 1231 |
| PspGI | CCWGG | 2 cut(s) | 853, 1231 |
| PspN4I | GGNNCC | 2 cut(s) | 442, 672 |
| PspPI | GGNCC | 2 cut(s) | 440, 1229 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 654, 686 |
| PstNI | CAGNNNCTG | 1 cut(s) | 854 |
| RsaI | GTAC | 2 cut(s) | 672, 799 |
| RsaNI | GTAC | 2 cut(s) | 671, 798 |
| RseI | CAYNNNNRTG | 3 cut(s) | 393, 827, 884 |
| SaqAI | TTAA | 9 cut(s) | 5, 35, 105, 134, 140, 255, 273, 318, 651 |
| SatI | GCNGC | 2 cut(s) | 469, 1071 |
| Sau3AI | GATC | 2 cut(s) | 148, 1131 |
| Sau96I | GGNCC | 2 cut(s) | 440, 1229 |
| SchI | GAGTC | 1 cut(s) | 42 |
| ScrFI | CCNGG | 2 cut(s) | 855, 1233 |
| SduI | GDGCHC | 2 cut(s) | 814, 1099 |
| SetI | ASST | 8 cut(s) | 301, 358, 616, 667, 676, 989, 1066, 1261 |
| SfaNI | GCATC | 1 cut(s) | 1176 |
| SfcI | CTRYAG | 1 cut(s) | 837 |
| Sfr274I | CTCGAG | 1 cut(s) | 503 |
| SinI | GGWCC | 1 cut(s) | 1229 |
| SlaI | CTCGAG | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 393, 827, 884 |
| SmlI | CTYRAG | 3 cut(s) | 203, 272, 503 |
| SmoI | CTYRAG | 3 cut(s) | 203, 272, 503 |
| SphI | GCATGC | 1 cut(s) | 562 |
| Sse9I | AATT | 7 cut(s) | 198, 338, 420, 480, 578, 963, 1270 |
| SseBI | AGGCCT | 1 cut(s) | 1044 |
| SsiI | CCGC | 2 cut(s) | 469, 858 |
| SspI | AATATT | 3 cut(s) | 348, 1124, 1239 |
| SspMI | CTAG | 2 cut(s) | 1061, 1092 |
| StuI | AGGCCT | 1 cut(s) | 1044 |
| StyD4I | CCNGG | 2 cut(s) | 853, 1231 |
| StyI | CCWWGG | 1 cut(s) | 1259 |
| TaaI | ACNGT | 6 cut(s) | 80, 110, 238, 525, 802, 850 |
| TaiI | ACGT | 2 cut(s) | 667, 989 |
| TaqI | TCGA | 3 cut(s) | 462, 504, 1206 |
| TasI | AATT | 7 cut(s) | 198, 338, 420, 480, 578, 963, 1270 |
| TatI | WGTACW | 1 cut(s) | 797 |
| TauI | GCSGC | 1 cut(s) | 471 |
| TfiI | GAWTC | 2 cut(s) | 228, 978 |
| Tru1I | TTAA | 9 cut(s) | 5, 35, 105, 134, 140, 255, 273, 318, 651 |
| Tru9I | TTAA | 9 cut(s) | 5, 35, 105, 134, 140, 255, 273, 318, 651 |
| TscAI | CASTG | 2 cut(s) | 183, 1173 |
| TseFI | GTSAC | 3 cut(s) | 820, 869, 1081 |
| TseI | GCWGC | 1 cut(s) | 1070 |
| Tsp45I | GTSAC | 3 cut(s) | 820, 869, 1081 |
| TspGWI | ACGGA | 1 cut(s) | 1242 |
| TspRI | CASTG | 2 cut(s) | 183, 1173 |
| Vha464I | CTTAAG | 1 cut(s) | 272 |
| VpaK11BI | GGWCC | 1 cut(s) | 1229 |
| VspI | ATTAAT | 1 cut(s) | 318 |
| XapI | RAATTY | 4 cut(s) | 198, 338, 420, 480 |
| XceI | RCATGY | 3 cut(s) | 374, 562, 576 |
| XhoI | CTCGAG | 1 cut(s) | 503 |
| XmiI | GTMKAC | 3 cut(s) | 82, 211, 1220 |
| XmnI | GAANNNNTTC | 1 cut(s) | 905 |
| XspI | CTAG | 2 cut(s) | 1061, 1092 |
| Zsp2I | ATGCAT | 1 cut(s) | 687 |