protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 20 - 46 | 2.1e-06 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 33 - 108 | 2.4e-11 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 162 - 231 | 1.4e-09 | Ankyrin repeats (3 copies) |
| Ank_5 | PF13857 | 176 - 218 | 1.3e-06 | Ankyrin repeats (many copies) |
| Ank_2 | PF12796 | 240 - 293 | 3.9e-08 | Ankyrin repeats (3 copies) |
| PGG | PF13962 | 724 - 836 | 2.1e-20 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1520 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 106 |
| Acc16I | TGCGCA | 1 cut(s) | 1572 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 164 |
| AccI | GTMKAC | 2 cut(s) | 657, 1684 |
| AciI | CCGC | 4 cut(s) | 240, 971, 1599, 2237 |
| AclI | AACGTT | 1 cut(s) | 1464 |
| AclWI | GGATC | 5 cut(s) | 485, 1295, 1391, 1404, 2540 |
| AcoI | YGGCCR | 4 cut(s) | 279, 1170, 1857, 1930 |
| AcsI | RAATTY | 4 cut(s) | 1253, 1741, 1881, 1978 |
| AcuI | CTGAAG | 5 cut(s) | 132, 135, 716, 921, 1569 |
| AdeI | CACNNNGTG | 1 cut(s) | 1091 |
| AfaI | GTAC | 7 cut(s) | 13, 185, 314, 501, 1711, 1826, 2073 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 164, 524, 768, 1168, 1732 |
| AflIII | ACRYGT | 2 cut(s) | 667, 1791 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2335 |
| AjiI | CACGTC | 2 cut(s) | 1774, 2388 |
| AjnI | CCWGG | 4 cut(s) | 290, 945, 2077, 2254 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 548, 580 |
| AleI | CACNNNNGTG | 1 cut(s) | 2684 |
| Alw21I | GWGCWC | 1 cut(s) | 2681 |
| Alw26I | GTCTC | 6 cut(s) | 92, 362, 615, 1230, 1764, 2467 |
| AlwI | GGATC | 5 cut(s) | 485, 1295, 1391, 1404, 2540 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2255, 2333 |
| Ama87I | CYCGRG | 3 cut(s) | 90, 518, 1055 |
| AoxI | GGCC | 7 cut(s) | 279, 704, 1170, 1857, 1930, 2443, 2497 |
| ApeKI | GCWGC | 5 cut(s) | 476, 548, 758, 2189, 2240 |
| ApoI | RAATTY | 4 cut(s) | 1253, 1741, 1881, 1978 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1763, 1795 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 48, 2130 |
| AspLEI | GCGC | 2 cut(s) | 1573, 2273 |
| AspS9I | GGNCC | 2 cut(s) | 964, 1842 |
| AsuC2I | CCSGG | 2 cut(s) | 91, 92 |
| AsuHPI | GGTGA | 6 cut(s) | 458, 1401, 1747, 2135, 2215, 2464 |
| AsuII | TTCGAA | 2 cut(s) | 320, 1257 |
| AvaI | CYCGRG | 3 cut(s) | 90, 518, 1055 |
| AvaII | GGWCC | 2 cut(s) | 964, 1842 |
| AxyI | CCTNAGG | 1 cut(s) | 1428 |
| BalI | TGGCCA | 2 cut(s) | 1172, 1859 |
| BamHI | GGATCC | 1 cut(s) | 1396 |
| BauI | CACGAG | 2 cut(s) | 2087, 2121 |
| BbsI | GAAGAC | 2 cut(s) | 399, 894 |
| Bbv12I | GWGCWC | 1 cut(s) | 2681 |
| BbvI | GCAGC | 5 cut(s) | 488, 560, 745, 2201, 2252 |
| BccI | CCATC | 3 cut(s) | 158, 1190, 2661 |
| BceAI | ACGGC | 3 cut(s) | 294, 549, 1917 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2075, 2109 |
| BciT130I | CCWGG | 4 cut(s) | 292, 947, 2079, 2256 |
| BciVI | GTATCC | 1 cut(s) | 521 |
| BclI | TGATCA | 3 cut(s) | 912, 1378, 1666 |
| BcnI | CCSGG | 2 cut(s) | 91, 92 |
| BcoDI | GTCTC | 6 cut(s) | 92, 362, 615, 1230, 1764, 2467 |
| BfaI | CTAG | 1 cut(s) | 1563 |
| BfmI | CTRYAG | 2 cut(s) | 15, 741 |
| BfoI | RGCGCY | 1 cut(s) | 2274 |
| BfuI | GTATCC | 1 cut(s) | 521 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 869 |
| BglII | AGATCT | 1 cut(s) | 817 |
| BisI | GCNGC | 6 cut(s) | 477, 549, 759, 2190, 2238, 2241 |
| BlpI | GCTNAGC | 1 cut(s) | 1904 |
| BlsI | GCNGC | 6 cut(s) | 478, 550, 760, 2191, 2239, 2242 |
| BmcAI | AGTACT | 2 cut(s) | 13, 1711 |
| Bme1390I | CCNGG | 6 cut(s) | 91, 92, 292, 947, 2079, 2256 |
| Bme18I | GGWCC | 2 cut(s) | 964, 1842 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2335 |
| BmeT110I | CYCGRG | 3 cut(s) | 90, 518, 1055 |
| BmgBI | CACGTC | 2 cut(s) | 1774, 2388 |
| BmgT120I | GGNCC | 2 cut(s) | 964, 1842 |
| BmiI | GGNNCC | 3 cut(s) | 171, 1398, 2263 |
| BmrFI | CCNGG | 6 cut(s) | 91, 92, 292, 947, 2079, 2256 |
| BmrI | ACTGGG | 1 cut(s) | 1577 |
| BmsI | GCATC | 3 cut(s) | 1091, 1582, 2499 |
| BmuI | ACTGGG | 1 cut(s) | 1577 |
| BpiI | GAAGAC | 2 cut(s) | 399, 894 |
| BpmI | CTGGAG | 3 cut(s) | 394, 842, 2061 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1508 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1904 |
| Bpu14I | TTCGAA | 2 cut(s) | 320, 1257 |
| BpuEI | CTTGAG | 2 cut(s) | 231, 1267 |
| BpuMI | CCSGG | 2 cut(s) | 91, 92 |
| BsaAI | YACGTR | 1 cut(s) | 1190 |
| BsaJI | CCNNGG | 5 cut(s) | 90, 210, 291, 519, 1731 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 296, 326 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 164, 524, 768, 1168, 1732 |
| Bse118I | RCCGGY | 1 cut(s) | 1309 |
| Bse1I | ACTGG | 4 cut(s) | 989, 1583, 2559, 2567 |
| Bse21I | CCTNAGG | 1 cut(s) | 1428 |
| Bse3DI | GCAATG | 1 cut(s) | 2051 |
| BseBI | CCWGG | 4 cut(s) | 292, 947, 2079, 2256 |
| BseDI | CCNNGG | 5 cut(s) | 90, 210, 291, 519, 1731 |
| BseGI | GGATG | 3 cut(s) | 133, 201, 1027 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 164, 524, 768, 1168, 1732 |
| BseMI | GCAATG | 1 cut(s) | 2051 |
| BseMII | CTCAG | 7 cut(s) | 1282, 1442, 1527, 1591, 1704, 1895, 1907 |
| BseNI | ACTGG | 4 cut(s) | 989, 1583, 2559, 2567 |
| BseXI | GCAGC | 5 cut(s) | 488, 560, 745, 2201, 2252 |
| BsgI | GTGCAG | 2 cut(s) | 567, 1992 |
| BshFI | GGCC | 7 cut(s) | 281, 706, 1172, 1859, 1932, 2445, 2499 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2681 |
| BsiHKCI | CYCGRG | 3 cut(s) | 90, 518, 1055 |
| BsiSI | CCGG | 4 cut(s) | 91, 383, 1310, 1538 |
| BslFI | GGGAC | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 164, 524, 768, 1168, 1732 |
| BsmAI | GTCTC | 6 cut(s) | 92, 362, 615, 1230, 1764, 2467 |
| BsmBI | CGTCTC | 2 cut(s) | 362, 1764 |
| BsmFI | GGGAC | 1 cut(s) | 256 |
| BsmI | GAATGC | 1 cut(s) | 2088 |
| BsnI | GGCC | 7 cut(s) | 281, 706, 1172, 1859, 1932, 2445, 2499 |
| BsoBI | CYCGRG | 3 cut(s) | 90, 518, 1055 |
| Bsp119I | TTCGAA | 2 cut(s) | 320, 1257 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2681 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1904 |
| Bsp19I | CCATGG | 1 cut(s) | 1731 |
| BspACI | CCGC | 4 cut(s) | 240, 971, 1599, 2237 |
| BspANI | GGCC | 7 cut(s) | 281, 706, 1172, 1859, 1932, 2445, 2499 |
| BspCNI | CTCAG | 7 cut(s) | 1281, 1441, 1526, 1590, 1705, 1896, 1908 |
| BspHI | TCATGA | 1 cut(s) | 1390 |
| BspLI | GGNNCC | 3 cut(s) | 171, 1398, 2263 |
| BspMAI | CTGCAG | 1 cut(s) | 19 |
| BspPI | GGATC | 5 cut(s) | 485, 1295, 1391, 1404, 2540 |
| BspQI | GCTCTTC | 3 cut(s) | 348, 648, 753 |
| BspT104I | TTCGAA | 2 cut(s) | 320, 1257 |
| BsrDI | GCAATG | 1 cut(s) | 2051 |
| BsrFI | RCCGGY | 1 cut(s) | 1309 |
| BsrI | ACTGG | 4 cut(s) | 989, 1583, 2559, 2567 |
| BssAI | RCCGGY | 1 cut(s) | 1309 |
| BssECI | CCNNGG | 5 cut(s) | 90, 210, 291, 519, 1731 |
| BssNAI | GTATAC | 1 cut(s) | 1685 |
| BssSI | CACGAG | 2 cut(s) | 2087, 2121 |
| BssT1I | CCWWGG | 2 cut(s) | 210, 1731 |
| Bst1107I | GTATAC | 1 cut(s) | 1685 |
| Bst2BI | CACGAG | 2 cut(s) | 2087, 2121 |
| Bst2UI | CCWGG | 4 cut(s) | 292, 947, 2079, 2256 |
| Bst6I | CTCTTC | 4 cut(s) | 348, 648, 753, 2453 |
| BstBAI | YACGTR | 1 cut(s) | 1190 |
| BstBI | TTCGAA | 2 cut(s) | 320, 1257 |
| BstC8I | GCNNGC | 6 cut(s) | 222, 309, 874, 1811, 2584, 2588 |
| BstDEI | CTNAG | 9 cut(s) | 503, 1268, 1428, 1508, 1513, 1577, 1713, 1904, 1916 |
| BstDSI | CCRYGG | 1 cut(s) | 1731 |
| BstF5I | GGATG | 3 cut(s) | 133, 201, 1027 |
| BstH2I | RGCGCY | 1 cut(s) | 2274 |
| BstHHI | GCGC | 2 cut(s) | 1573, 2273 |
| BstMAI | GTCTC | 6 cut(s) | 92, 362, 615, 1230, 1764, 2467 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 221, 278, 287, 869, 882, 1178, 1568, 2277 |
| BstNI | CCWGG | 4 cut(s) | 292, 947, 2079, 2256 |
| BstNSI | RCATGY | 4 cut(s) | 224, 671, 1795, 2590 |
| BstSCI | CCNGG | 6 cut(s) | 89, 90, 290, 945, 2077, 2254 |
| BstSFI | CTRYAG | 2 cut(s) | 15, 741 |
| BstV1I | GCAGC | 5 cut(s) | 488, 560, 745, 2201, 2252 |
| BstV2I | GAAGAC | 2 cut(s) | 399, 894 |
| BstX2I | RGATCY | 3 cut(s) | 817, 1287, 1396 |
| BstYI | RGATCY | 3 cut(s) | 817, 1287, 1396 |
| BstZ17I | GTATAC | 1 cut(s) | 1685 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1428 |
| BsuI | GTATCC | 1 cut(s) | 521 |
| BsuRI | GGCC | 7 cut(s) | 281, 706, 1172, 1859, 1932, 2445, 2499 |
| BtgI | CCRYGG | 1 cut(s) | 1731 |
| BtrI | CACGTC | 2 cut(s) | 1774, 2388 |
| BtsCI | GGATG | 3 cut(s) | 133, 201, 1027 |
| BtsIMutI | CAGTG | 5 cut(s) | 897, 1173, 1975, 2331, 2566 |
| Cac8I | GCNNGC | 6 cut(s) | 222, 309, 874, 1811, 2584, 2588 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2255, 2333 |
| CciI | TCATGA | 1 cut(s) | 1390 |
| CfoI | GCGC | 2 cut(s) | 1573, 2273 |
| Cfr10I | RCCGGY | 1 cut(s) | 1309 |
| Cfr13I | GGNCC | 2 cut(s) | 964, 1842 |
| Cfr9I | CCCGGG | 1 cut(s) | 90 |
| CseI | GACGC | 1 cut(s) | 1223 |
| Csp6I | GTAC | 7 cut(s) | 12, 184, 313, 500, 1710, 1825, 2072 |
| CviQI | GTAC | 7 cut(s) | 12, 184, 313, 500, 1710, 1825, 2072 |
| DdeI | CTNAG | 9 cut(s) | 503, 1268, 1428, 1508, 1513, 1577, 1713, 1904, 1916 |
| DraI | TTTAAA | 1 cut(s) | 1015 |
| DraIII | CACNNNGTG | 1 cut(s) | 1091 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 106 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2335 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 106 |
| EaeI | YGGCCR | 4 cut(s) | 279, 1170, 1857, 1930 |
| Eam1104I | CTCTTC | 4 cut(s) | 348, 648, 753, 2453 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2335 |
| EarI | CTCTTC | 4 cut(s) | 348, 648, 753, 2453 |
| EciI | GGCGGA | 1 cut(s) | 960 |
| Eco130I | CCWWGG | 2 cut(s) | 210, 1731 |
| Eco147I | AGGCCT | 1 cut(s) | 2445 |
| Eco47I | GGWCC | 2 cut(s) | 964, 1842 |
| Eco57I | CTGAAG | 5 cut(s) | 132, 135, 716, 921, 1569 |
| Eco81I | CCTNAGG | 1 cut(s) | 1428 |
| Eco88I | CYCGRG | 3 cut(s) | 90, 518, 1055 |
| EcoRI | GAATTC | 1 cut(s) | 1253 |
| EcoRII | CCWGG | 4 cut(s) | 290, 945, 2077, 2254 |
| EcoT14I | CCWWGG | 2 cut(s) | 210, 1731 |
| ErhI | CCWWGG | 2 cut(s) | 210, 1731 |
| Esp3I | CGTCTC | 2 cut(s) | 362, 1764 |
| FaqI | GGGAC | 1 cut(s) | 256 |
| FauI | CCCGC | 1 cut(s) | 233 |
| FauNDI | CATATG | 2 cut(s) | 1854, 2626 |
| FbaI | TGATCA | 3 cut(s) | 912, 1378, 1666 |
| FblI | GTMKAC | 2 cut(s) | 657, 1684 |
| Fnu4HI | GCNGC | 6 cut(s) | 477, 549, 759, 2190, 2238, 2241 |
| FokI | GGATG | 3 cut(s) | 140, 208, 1034 |
| Fsp4HI | GCNGC | 6 cut(s) | 477, 549, 759, 2190, 2238, 2241 |
| FspAI | RTGCGCAY | 1 cut(s) | 1572 |
| FspBI | CTAG | 1 cut(s) | 1563 |
| FspI | TGCGCA | 1 cut(s) | 1572 |
| GlaI | GCGC | 2 cut(s) | 1572, 2272 |
| GluI | GCNGC | 6 cut(s) | 477, 549, 759, 2190, 2238, 2241 |
| GsuI | CTGGAG | 3 cut(s) | 394, 842, 2061 |
| HaeII | RGCGCY | 1 cut(s) | 2274 |
| HaeIII | GGCC | 7 cut(s) | 281, 706, 1172, 1859, 1932, 2445, 2499 |
| HapII | CCGG | 4 cut(s) | 91, 383, 1310, 1538 |
| HgaI | GACGC | 1 cut(s) | 1223 |
| HhaI | GCGC | 2 cut(s) | 1573, 2273 |
| Hin6I | GCGC | 2 cut(s) | 1571, 2271 |
| HinP1I | GCGC | 2 cut(s) | 1571, 2271 |
| HindIII | AAGCTT | 3 cut(s) | 1165, 1499, 1522 |
| HinfI | GANTC | 8 cut(s) | 244, 344, 431, 507, 1205, 1436, 1544, 1632 |
| HpaII | CCGG | 4 cut(s) | 91, 383, 1310, 1538 |
| HphI | GGTGA | 6 cut(s) | 458, 1401, 1747, 2135, 2215, 2464 |
| Hpy166II | GTNNAC | 9 cut(s) | 463, 658, 1609, 1685, 1777, 1825, 2126, 2296, 2352 |
| Hpy8I | GTNNAC | 9 cut(s) | 463, 658, 1609, 1685, 1777, 1825, 2126, 2296, 2352 |
| HpyCH4IV | ACGT | 6 cut(s) | 1156, 1189, 1464, 1773, 2387, 2392 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 221, 278, 287, 869, 882, 1178, 1568, 2277 |
| HpyF3I | CTNAG | 9 cut(s) | 503, 1268, 1428, 1508, 1513, 1577, 1713, 1904, 1916 |
| HpySE526I | ACGT | 6 cut(s) | 1156, 1189, 1464, 1773, 2387, 2392 |
| HspAI | GCGC | 2 cut(s) | 1571, 2271 |
| Ksp22I | TGATCA | 3 cut(s) | 912, 1378, 1666 |
| LguI | GCTCTTC | 3 cut(s) | 348, 648, 753 |
| LmnI | GCTCC | 2 cut(s) | 304, 413 |
| Lsp1109I | GCAGC | 5 cut(s) | 488, 560, 745, 2201, 2252 |
| LweI | GCATC | 3 cut(s) | 1091, 1582, 2499 |
| MaeI | CTAG | 1 cut(s) | 1563 |
| MaeII | ACGT | 6 cut(s) | 1156, 1189, 1464, 1773, 2387, 2392 |
| MaeIII | GTNAC | 9 cut(s) | 632, 1004, 1045, 1530, 1783, 2337, 2388, 2470, 2536 |
| MflI | RGATCY | 3 cut(s) | 817, 1287, 1396 |
| MhlI | GDGCHC | 1 cut(s) | 2681 |
| MlsI | TGGCCA | 2 cut(s) | 1172, 1859 |
| MluNI | TGGCCA | 2 cut(s) | 1172, 1859 |
| MlyI | GAGTC | 1 cut(s) | 238 |
| MmeI | TCCRAC | 2 cut(s) | 432, 505 |
| Mox20I | TGGCCA | 2 cut(s) | 1172, 1859 |
| MroXI | GAANNNNTTC | 2 cut(s) | 48, 2130 |
| MscI | TGGCCA | 2 cut(s) | 1172, 1859 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2228, 2432, 2477, 2480, 2684 |
| Msp20I | TGGCCA | 2 cut(s) | 1172, 1859 |
| MspA1I | CMGCKG | 3 cut(s) | 152, 758, 1599 |
| MspI | CCGG | 4 cut(s) | 91, 383, 1310, 1538 |
| MspR9I | CCNGG | 6 cut(s) | 91, 92, 292, 947, 2079, 2256 |
| Mva1269I | GAATGC | 1 cut(s) | 2088 |
| MvaI | CCWGG | 4 cut(s) | 292, 947, 2079, 2256 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 221, 278, 287, 869, 882, 1178, 1568, 2277 |
| NciI | CCSGG | 2 cut(s) | 91, 92 |
| NcoI | CCATGG | 1 cut(s) | 1731 |
| NdeI | CATATG | 2 cut(s) | 1854, 2626 |
| NlaIV | GGNNCC | 3 cut(s) | 171, 1398, 2263 |
| NmuCI | GTSAC | 4 cut(s) | 1530, 2337, 2388, 2470 |
| NsbI | TGCGCA | 1 cut(s) | 1572 |
| NspI | RCATGY | 4 cut(s) | 224, 671, 1795, 2590 |
| NspV | TTCGAA | 2 cut(s) | 320, 1257 |
| OliI | CACNNNNGTG | 1 cut(s) | 2684 |
| PaeI | GCATGC | 2 cut(s) | 224, 2590 |
| PaeR7I | CTCGAG | 1 cut(s) | 1055 |
| PagI | TCATGA | 1 cut(s) | 1390 |
| PceI | AGGCCT | 1 cut(s) | 2445 |
| PciI | ACATGT | 2 cut(s) | 667, 1791 |
| PciSI | GCTCTTC | 3 cut(s) | 348, 648, 753 |
| PctI | GAATGC | 1 cut(s) | 2088 |
| PdmI | GAANNNNTTC | 2 cut(s) | 48, 2130 |
| PfeI | GAWTC | 7 cut(s) | 344, 431, 507, 1205, 1436, 1544, 1632 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 164 |
| PfoI | TCCNGGA | 1 cut(s) | 2077 |
| PkrI | GCNGC | 6 cut(s) | 478, 550, 760, 2191, 2239, 2242 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| Ppu21I | YACGTR | 1 cut(s) | 1190 |
| PscI | ACATGT | 2 cut(s) | 667, 1791 |
| PsiI | TTATAA | 1 cut(s) | 1520 |
| Psp1406I | AACGTT | 1 cut(s) | 1464 |
| Psp6I | CCWGG | 4 cut(s) | 290, 945, 2077, 2254 |
| PspGI | CCWGG | 4 cut(s) | 290, 945, 2077, 2254 |
| PspN4I | GGNNCC | 3 cut(s) | 171, 1398, 2263 |
| PspPI | GGNCC | 2 cut(s) | 964, 1842 |
| PspXI | VCTCGAGB | 1 cut(s) | 1055 |
| PstI | CTGCAG | 1 cut(s) | 19 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2255, 2333 |
| PsuI | RGATCY | 3 cut(s) | 817, 1287, 1396 |
| PvuII | CAGCTG | 2 cut(s) | 152, 758 |
| RsaI | GTAC | 7 cut(s) | 13, 185, 314, 501, 1711, 1826, 2073 |
| RsaNI | GTAC | 7 cut(s) | 12, 184, 313, 500, 1710, 1825, 2072 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2228, 2432, 2477, 2480, 2684 |
| SapI | GCTCTTC | 3 cut(s) | 348, 648, 753 |
| SatI | GCNGC | 6 cut(s) | 477, 549, 759, 2190, 2238, 2241 |
| Sau96I | GGNCC | 2 cut(s) | 964, 1842 |
| ScaI | AGTACT | 2 cut(s) | 13, 1711 |
| SchI | GAGTC | 1 cut(s) | 238 |
| ScrFI | CCNGG | 6 cut(s) | 91, 92, 292, 947, 2079, 2256 |
| SduI | GDGCHC | 1 cut(s) | 2681 |
| SfaNI | GCATC | 3 cut(s) | 1091, 1582, 2499 |
| SfcI | CTRYAG | 2 cut(s) | 15, 741 |
| Sfr274I | CTCGAG | 1 cut(s) | 1055 |
| SfuI | TTCGAA | 2 cut(s) | 320, 1257 |
| SinI | GGWCC | 2 cut(s) | 964, 1842 |
| SlaI | CTCGAG | 1 cut(s) | 1055 |
| SmaI | CCCGGG | 1 cut(s) | 92 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2228, 2432, 2477, 2480, 2684 |
| SmlI | CTYRAG | 3 cut(s) | 246, 1055, 1246 |
| SmoI | CTYRAG | 3 cut(s) | 246, 1055, 1246 |
| SphI | GCATGC | 2 cut(s) | 224, 2590 |
| SseBI | AGGCCT | 1 cut(s) | 2445 |
| SsiI | CCGC | 4 cut(s) | 240, 971, 1599, 2237 |
| SspI | AATATT | 3 cut(s) | 328, 676, 2640 |
| SspMI | CTAG | 1 cut(s) | 1563 |
| StuI | AGGCCT | 1 cut(s) | 2445 |
| StyD4I | CCNGG | 6 cut(s) | 89, 90, 290, 945, 2077, 2254 |
| StyI | CCWWGG | 2 cut(s) | 210, 1731 |
| TaiI | ACGT | 6 cut(s) | 1159, 1192, 1467, 1776, 2390, 2395 |
| TaqI | TCGA | 7 cut(s) | 42, 274, 320, 1056, 1257, 2095, 2655 |
| TatI | WGTACW | 4 cut(s) | 11, 183, 499, 1709 |
| TauI | GCSGC | 1 cut(s) | 2240 |
| TfiI | GAWTC | 7 cut(s) | 344, 431, 507, 1205, 1436, 1544, 1632 |
| TscAI | CASTG | 5 cut(s) | 904, 1180, 1975, 2338, 2566 |
| TseFI | GTSAC | 4 cut(s) | 1530, 2337, 2388, 2470 |
| TseI | GCWGC | 5 cut(s) | 476, 548, 758, 2189, 2240 |
| Tsp45I | GTSAC | 4 cut(s) | 1530, 2337, 2388, 2470 |
| TspGWI | ACGGA | 3 cut(s) | 386, 413, 2171 |
| TspMI | CCCGGG | 1 cut(s) | 90 |
| TspRI | CASTG | 5 cut(s) | 904, 1180, 1975, 2338, 2566 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 164 |
| VpaK11BI | GGWCC | 2 cut(s) | 964, 1842 |
| XapI | RAATTY | 4 cut(s) | 1253, 1741, 1881, 1978 |
| XceI | RCATGY | 4 cut(s) | 224, 671, 1795, 2590 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1852 |
| XhoI | CTCGAG | 1 cut(s) | 1055 |
| XmaI | CCCGGG | 1 cut(s) | 90 |
| XmiI | GTMKAC | 2 cut(s) | 657, 1684 |
| XmnI | GAANNNNTTC | 2 cut(s) | 48, 2130 |
| XspI | CTAG | 1 cut(s) | 1563 |
| ZrmI | AGTACT | 2 cut(s) | 13, 1711 |