RchiOBHm_Chr7g0230661

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000027
Physical Location & Seq
Reverse (-)
54225486 .. 54245587
20102 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20670

Sequence Viewer

Length: 2631 bp
ATGGCGAGCATTACAGTTGCCTCCAATTCAATTGTCTTGGAAGTTCTTAACCAACATAACTATAAAGAATGGAGTTCTCGGGTTGAAACTTACTTGTTGGCTGAAGATCTTTGGGATGTCGTCAACATGAAACCTCCTGAACGAGAAGAGAGAGAAGTTGAATACGAGGCTTGGAAGACAAAGAATGCCAAGGCTTTACATGCAATTAAAATTTCTTGCGGGACTCAACCATTTTCTTTTATCAATGAAACCCGCACAGCCAAGATGGCCTGGGAGGTTTTGGAGAAACAGTTCAAATCACGTGACACATTACGTTTAGAACAAAAAGAGAGAGAAGAGAGAAACAGATATCTTTATACCAAAATCGATGATGCGAGGCAGGAGTTGACACCAGCTGATGAAGAAGGAGGAAATCAGAACAGTTCCAACTATCACTTCGACTCCAGCTATGAACCTTTCTTTGATTCTGTTGTGAATGGTCACTGGGATAATGCTAAGGAGTGCCTTGCTACATTACTAATTCCTAATGTACTAAGAGCAAGAAATCCAGCGGCTAGAGGATCTACAGCTCTTCACATTGCGGCGAGGGAAGGGCATGTGCATATTGTAAAAGAGTTGGTGTTGTTGATGACTCAAGAAGATCTGGAAATAAGAGATGATAATGGTTGTACCGCTCTTCACATAGCAGTACAGAAGGAGAATGTGGACGCTGTGAAAGAGGTGGTGCCGTTGATGAGACAACAGGGCTTGGGAATAAAAAACAAAAATTATGGTGAAACTGCTCTTCATGTAGCAGCTGGGAGTGGGAATGTGCATATTGCGAAAGAGTTGGGAGAGTTGATGAGGGAAGAAGATTTGGAAATAGGAAACTCCAACAATTGCCACGCTCTTCACATAGCACTCTTGAAAGGGCATGTGCATATTGGGAAAGAGTTGGTAGCATTGATGAGAAAAGAAGCTTTGGAAATGAATGATGGACAAGGCTATACGGCTTTAGGTCGTGCCATAAGGTTATGCCACCAGCGTGGAGACGAGTACAGTGAAGGAGCTGTGATCGAAATGATTAAACCCATGGTTGCAAAGAACCAGAAAATGCTTGGCATTGTGGCTTCTCCCAATGACTACATTCCAGTTGTGGAGGCTTGCATGTTGTTAAAATTCCAAGTGGGCCGCTATCTCTATTCCGTTACTCCACGGGAAGATTTAATGCCGTCAAAGAACAGACGGCAAGGTGCTTCACTATTTGTGTTTTGTCTTGGAGCGAAGGAATTTGATATTCCGTGGGACTTACTTTCAAATTGCCCAAGGTTGGCCACGGTTGAAACTGTACATGGAGGCAATTCTCCGATCTTGGTATTGTCTCGTATGCACTCTGCATTCTTAAGTGGAATGCAACTCAAATTTTGGCAAAAATGGATCTATGAAAGTATAAATATACAAGCTCCCGCTATTTTAGATATTCATGATATTTCTATACCTATTTCAATCTCAGAAGATGATGGAGGTACTCAAAGGGATGTCGTTGTCTCAGCTGTGAGTTTACATAAAAGGCTCGTTAAAAGCCTCCTTGATGTTTTGGGAATCAATCGCATATATGAAATGAAATTGATCCATGTTCGAATGTATGAATTTATACGTTGCATGGGTGAAGCCACAAGAAATAGGGATGATCTTACACTTGTGCAACTTAATTTGATGAAGAAATCAATCTTCGAAGCTATAGAACGAGGGGATCTTGAGTTTATCACTCGTATTTGTAAAGCAAATGCAGAACTTGTGAACATCTTGGATGAAAAAGGAAGAAGCATATTTCATTTCGCCATTGAATGTCGTCAAGAAGAAATTTATTCTCTTATCTACGGTCTTGCGGAAGAAAAGAGAAATTTATATGGAATTAACACAGCGTGCTTTAAAAATAGTATGCTACATGCTGCAGGGAATTTATCTCCCTTTTCACAGTCTAATCATATTCAAGGTGCAAGCTTGCAAATGCAAAGAGAATTACAATGGTTTAAGGAGGTCAAGAGTATTGTTCCTCTAGCAGCACATGAGACTCGAAATACTTCAGACGATTTGACAGCTCGTGAACTATTTCATAAGAATCATGAGAAATTGATGGTGGAAGCAGAAATATCAATGAAAGGGACAGCAACTTCTTGTACAGTTATAGGTGCTTTGATTGTTACCATCATGTTTGCTGCAGCATTCACAATTCCTGGTGGAAATAATGGTACATCAGGCCTTCCAATGTTCATAAACGAAAACTTGTTTTTGGTGTTTATAGCTTCAGATACTATATCCCTTATTTTTTCAACAACTTCAGTTATTATATTTTTGGGAATCCTCACATCACGTTATGCAGAAGCGGATTTCCTCCAAAACTTACCCACAAAGATGATGATAGGTCTTTTAACCCTTTTCATCGCTATTGCCACCATGATGATCGCATTTTCTTGTGGCCTTGTCATTATGCTTAATGGAAAATATTCATGGGTTCCTATTCCAGGCATCTTGGTTGCTAGTATCCCAGTGACCTCATTTGCGTGGATGTTGTTTCCCCTCCTTGTGCAGACTTTCATTTCTACTTATGGACCGGGAATATTCAACAGGAAAGTCAAACAGTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

876

Amino Acids

98.62

Weight (kDa)

6.2

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 16 - 42 4.5e-08 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 29 - 104 6.9e-10 gag-polypeptide of LTR copia-type
Ank_2 PF12796 167 - 241 1.3e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 191 - 278 6.4e-15 Ankyrin repeats (3 copies)
Ank_4 PF13637 191 - 239 4.5e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 249 - 313 7.1e-07 Ankyrin repeats (3 copies)
PGG PF13962 713 - 823 2.5e-21 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 724
AccBSI CCGCTC 1 cut(s) 674
AciI CCGC 9 cut(s) 219, 253, 551, 581, 672, 1171, 1446, 1868, 2366
AclWI GGATC 4 cut(s) 568, 1424, 1603, 1740
AcoI YGGCCR 1 cut(s) 1311
AcsI RAATTY 8 cut(s) 210, 1157, 1268, 1400, 1628, 1842, 1882, 1939
AcuI CTGAAG 4 cut(s) 123, 2049, 2271, 2304
AcvI CACGTG 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 1905
AfaI GTAC 8 cut(s) 531, 670, 690, 1037, 1329, 1507, 2161, 2233
AfiI CCNNNNNNNGG 2 cut(s) 1309, 2504
AflII CTTAAG 1 cut(s) 1381
AjnI CCWGG 3 cut(s) 269, 2215, 2503
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AleI CACNNNNGTG 1 cut(s) 1023
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
Alw26I GTCTC 5 cut(s) 730, 1023, 1365, 1531, 2045
AlwI GGATC 4 cut(s) 568, 1424, 1603, 1740
Ama87I CYCGRG 1 cut(s) 78
AoxI GGCC 5 cut(s) 267, 1168, 1311, 2239, 2458
ApeKI GCWGC 5 cut(s) 794, 1931, 2042, 2198, 2201
ApoI RAATTY 8 cut(s) 210, 1157, 1268, 1400, 1628, 1842, 1882, 1939
Asp700I GAANNNNTTC 4 cut(s) 290, 2062, 2091, 2485
AspS9I GGNCC 2 cut(s) 1168, 2591
AsuC2I CCSGG 1 cut(s) 2595
AsuHPI GGTGA 2 cut(s) 785, 1658
AsuII TTCGAA 2 cut(s) 1618, 1713
AvaI CYCGRG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 2591
BalI TGGCCA 1 cut(s) 1313
BanI GGYRCC 1 cut(s) 724
BauI CACGAG 1 cut(s) 2082
BbrPI CACGTG 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 5 cut(s) 806, 1918, 2054, 2185, 2213
BccI CCATC 5 cut(s) 259, 968, 1493, 2110, 2195
BceAI ACGGC 4 cut(s) 712, 1005, 1195, 1241
BciT130I CCWGG 3 cut(s) 271, 2217, 2505
BciVI GTATCC 1 cut(s) 2534
BcnI CCSGG 1 cut(s) 2595
BcoDI GTCTC 5 cut(s) 730, 1023, 1365, 1531, 2045
BfaI CTAG 3 cut(s) 555, 2039, 2520
BfmI CTRYAG 4 cut(s) 564, 1719, 1932, 2199
BfrI CTTAAG 1 cut(s) 1381
BfuI GTATCC 1 cut(s) 2534
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 2 cut(s) 106, 640
BisI GCNGC 8 cut(s) 552, 582, 795, 1171, 1932, 2043, 2199, 2202
BlsI GCNGC 8 cut(s) 553, 583, 796, 1172, 1933, 2044, 2200, 2203
Bme1390I CCNGG 4 cut(s) 271, 2217, 2505, 2595
Bme18I GGWCC 1 cut(s) 2591
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 1168, 2591
BmiI GGNNCC 2 cut(s) 726, 2496
BmrFI CCNGG 4 cut(s) 271, 2217, 2505, 2595
BmrI ACTGGG 2 cut(s) 493, 2522
BmsI GCATC 2 cut(s) 361, 2517
BmuI ACTGGG 2 cut(s) 493, 2522
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 495
Bpu14I TTCGAA 2 cut(s) 1618, 1713
BpuEI CTTGAG 2 cut(s) 618, 1757
BpuMI CCSGG 1 cut(s) 2595
Bsa29I ATCGAT 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 7 cut(s) 189, 270, 1071, 1193, 1280, 1304, 1314
BsaXI ACNNNNNCTCC 4 cut(s) 275, 305, 425, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 1309, 2504
Bse1I ACTGG 3 cut(s) 488, 1130, 2528
Bse3DI GCAATG 1 cut(s) 576
BseBI CCWGG 3 cut(s) 271, 2217, 2505
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 7 cut(s) 189, 270, 1071, 1193, 1280, 1304, 1314
BseGI GGATG 5 cut(s) 121, 1522, 1672, 1795, 2553
BseLI CCNNNNNNNGG 2 cut(s) 1309, 2504
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 1503, 1542
BseNI ACTGG 3 cut(s) 488, 1130, 2528
BseXI GCAGC 5 cut(s) 806, 1918, 2054, 2185, 2213
BseYI CCCAGC 1 cut(s) 797
BsgI GTGCAG 1 cut(s) 2588
BshFI GGCC 5 cut(s) 269, 1170, 1313, 2241, 2460
BshNI GGYRCC 1 cut(s) 724
BshVI ATCGAT 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 78
BsiSI CCGG 1 cut(s) 2594
BslFI GGGAC 3 cut(s) 235, 1298, 2158
BslI CCNNNNNNNGG 2 cut(s) 1309, 2504
BsmAI GTCTC 5 cut(s) 730, 1023, 1365, 1531, 2045
BsmBI CGTCTC 1 cut(s) 1023
BsmFI GGGAC 3 cut(s) 235, 1298, 2158
BsmI GAATGC 4 cut(s) 190, 1376, 1395, 2204
BsnI GGCC 5 cut(s) 269, 1170, 1313, 2241, 2460
BsoBI CYCGRG 1 cut(s) 78
Bsp119I TTCGAA 2 cut(s) 1618, 1713
Bsp1407I TGTACA 2 cut(s) 1327, 2159
Bsp19I CCATGG 1 cut(s) 1071
BspACI CCGC 9 cut(s) 219, 253, 551, 581, 672, 1171, 1446, 1868, 2366
BspANI GGCC 5 cut(s) 269, 1170, 1313, 2241, 2460
BspCNI CTCAG 2 cut(s) 1502, 1541
BspDI ATCGAT 1 cut(s) 366
BspHI TCATGA 2 cut(s) 1462, 2104
BspLI GGNNCC 2 cut(s) 726, 2496
BspMAI CTGCAG 2 cut(s) 1936, 2203
BspPI GGATC 4 cut(s) 568, 1424, 1603, 1740
BspQI GCTCTTC 4 cut(s) 576, 681, 789, 894
BspT104I TTCGAA 2 cut(s) 1618, 1713
BspT107I GGYRCC 1 cut(s) 724
BspTI CTTAAG 1 cut(s) 1381
BsrBI CCGCTC 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 576
BsrGI TGTACA 2 cut(s) 1327, 2159
BsrI ACTGG 3 cut(s) 488, 1130, 2528
BssECI CCNNGG 7 cut(s) 189, 270, 1071, 1193, 1280, 1304, 1314
BssSI CACGAG 1 cut(s) 2082
BssT1I CCWWGG 3 cut(s) 189, 1071, 1304
Bst2BI CACGAG 1 cut(s) 2082
Bst2UI CCWGG 3 cut(s) 271, 2217, 2505
Bst6I CTCTTC 6 cut(s) 141, 330, 576, 681, 789, 894
BstAFI CTTAAG 1 cut(s) 1381
BstAUI TGTACA 2 cut(s) 1327, 2159
BstBAI YACGTR 1 cut(s) 302
BstBI TTCGAA 2 cut(s) 1618, 1713
BstC8I GCNNGC 5 cut(s) 7, 1144, 1906, 1981, 1985
BstDEI CTNAG 4 cut(s) 495, 533, 1489, 1528
BstDSI CCRYGG 4 cut(s) 1071, 1193, 1280, 1314
BstENI CCTNNNNNAGG 1 cut(s) 2502
BstF5I GGATG 5 cut(s) 121, 1522, 1672, 1795, 2553
BstMAI GTCTC 5 cut(s) 730, 1023, 1365, 1531, 2045
BstMWI GCNNNNNNNGC 2 cut(s) 200, 266
BstNI CCWGG 3 cut(s) 271, 2217, 2505
BstNSI RCATGY 5 cut(s) 203, 599, 917, 1150, 1931
BstSCI CCNGG 4 cut(s) 269, 2215, 2503, 2593
BstSFI CTRYAG 4 cut(s) 564, 1719, 1932, 2199
BstV1I GCAGC 5 cut(s) 806, 1918, 2054, 2185, 2213
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 5 cut(s) 106, 560, 640, 1416, 1732
BstXI CCANNNNNNTGG 1 cut(s) 1025
BstYI RGATCY 5 cut(s) 106, 560, 640, 1416, 1732
Bsu15I ATCGAT 1 cut(s) 366
BsuI GTATCC 1 cut(s) 2534
BsuRI GGCC 5 cut(s) 269, 1170, 1313, 2241, 2460
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 4 cut(s) 1071, 1193, 1280, 1314
BtgZI GCGATG 1 cut(s) 2407
BtsCI GGATG 5 cut(s) 121, 1522, 1672, 1795, 2553
BtsIMutI CAGTG 4 cut(s) 481, 1045, 2535, 2627
Cac8I GCNNGC 5 cut(s) 7, 1144, 1906, 1981, 1985
CciI TCATGA 2 cut(s) 1462, 2104
Cfr13I GGNCC 2 cut(s) 1168, 2591
ClaI ATCGAT 1 cut(s) 366
CseI GACGC 1 cut(s) 716
Csp6I GTAC 8 cut(s) 530, 669, 689, 1036, 1328, 1506, 2160, 2232
CviQI GTAC 8 cut(s) 530, 669, 689, 1036, 1328, 1506, 2160, 2232
DdeI CTNAG 4 cut(s) 495, 533, 1489, 1528
DraI TTTAAA 1 cut(s) 1912
DraIII CACNNNGTG 1 cut(s) 1905
EaeI YGGCCR 1 cut(s) 1311
Eam1104I CTCTTC 6 cut(s) 141, 330, 576, 681, 789, 894
EarI CTCTTC 6 cut(s) 141, 330, 576, 681, 789, 894
Eco130I CCWWGG 3 cut(s) 189, 1071, 1304
Eco147I AGGCCT 1 cut(s) 2241
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 2591
Eco57I CTGAAG 4 cut(s) 123, 2049, 2271, 2304
Eco72I CACGTG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 2502
EcoRII CCWGG 3 cut(s) 269, 2215, 2503
EcoRV GATATC 1 cut(s) 350
EcoT14I CCWWGG 3 cut(s) 189, 1071, 1304
ErhI CCWWGG 3 cut(s) 189, 1071, 1304
Esp3I CGTCTC 1 cut(s) 1023
FaqI GGGAC 3 cut(s) 235, 1298, 2158
FauI CCCGC 3 cut(s) 212, 260, 1453
Fnu4HI GCNGC 8 cut(s) 552, 582, 795, 1171, 1932, 2043, 2199, 2202
FokI GGATG 5 cut(s) 128, 1529, 1679, 1802, 2560
Fsp4HI GCNGC 8 cut(s) 552, 582, 795, 1171, 1932, 2043, 2199, 2202
FspBI CTAG 3 cut(s) 555, 2039, 2520
GluI GCNGC 8 cut(s) 552, 582, 795, 1171, 1932, 2043, 2199, 2202
GsaI CCCAGC 1 cut(s) 801
GsuI CTGGAG 1 cut(s) 427
HaeIII GGCC 5 cut(s) 269, 1170, 1313, 2241, 2460
HapII CCGG 1 cut(s) 2594
HgaI GACGC 1 cut(s) 716
HincII GTYRAC 2 cut(s) 124, 387
HindII GTYRAC 2 cut(s) 124, 387
HindIII AAGCTT 2 cut(s) 957, 1981
HinfI GANTC 8 cut(s) 223, 440, 464, 631, 1581, 2053, 2101, 2340
HpaII CCGG 1 cut(s) 2594
HphI GGTGA 2 cut(s) 785, 1658
Hpy166II GTNNAC 6 cut(s) 124, 387, 706, 1541, 1780, 2087
Hpy188I TCNGA 5 cut(s) 417, 1347, 1492, 2068, 2290
Hpy8I GTNNAC 6 cut(s) 124, 387, 706, 1541, 1780, 2087
HpyAV CCTTC 6 cut(s) 398, 584, 688, 1037, 1258, 2252
HpyCH4IV ACGT 4 cut(s) 301, 313, 1636, 2353
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 266
HpyF3I CTNAG 4 cut(s) 495, 533, 1489, 1528
HpySE526I ACGT 4 cut(s) 301, 313, 1636, 2353
LguI GCTCTTC 4 cut(s) 576, 681, 789, 894
LmnI GCTCC 3 cut(s) 1046, 1259, 1447
Lsp1109I GCAGC 5 cut(s) 806, 1918, 2054, 2185, 2213
LweI GCATC 2 cut(s) 361, 2517
MaeI CTAG 3 cut(s) 555, 2039, 2520
MaeII ACGT 4 cut(s) 301, 313, 1636, 2353
MaeIII GTNAC 5 cut(s) 302, 479, 1186, 2182, 2530
MbiI CCGCTC 1 cut(s) 674
MfeI CAATTG 2 cut(s) 30, 877
MflI RGATCY 5 cut(s) 106, 560, 640, 1416, 1732
MlsI TGGCCA 1 cut(s) 1313
MluNI TGGCCA 1 cut(s) 1313
MlyI GAGTC 4 cut(s) 217, 434, 625, 2047
MmeI TCCRAC 2 cut(s) 450, 897
Mox20I TGGCCA 1 cut(s) 1313
MroXI GAANNNNTTC 4 cut(s) 290, 2062, 2091, 2485
MscI TGGCCA 1 cut(s) 1313
MslI CAYNNNNRTG 4 cut(s) 1023, 2393, 2438, 2542
Msp20I TGGCCA 1 cut(s) 1313
MspA1I CMGCKG 4 cut(s) 395, 551, 797, 1532
MspCI CTTAAG 1 cut(s) 1381
MspI CCGG 1 cut(s) 2594
MspR9I CCNGG 4 cut(s) 271, 2217, 2505, 2595
MunI CAATTG 2 cut(s) 30, 877
Mva1269I GAATGC 4 cut(s) 190, 1376, 1395, 2204
MvaI CCWGG 3 cut(s) 271, 2217, 2505
MwoI GCNNNNNNNGC 2 cut(s) 200, 266
NciI CCSGG 1 cut(s) 2595
NcoI CCATGG 1 cut(s) 1071
NlaIV GGNNCC 2 cut(s) 726, 2496
NmuCI GTSAC 3 cut(s) 302, 479, 2530
NspI RCATGY 5 cut(s) 203, 599, 917, 1150, 1931
NspV TTCGAA 2 cut(s) 1618, 1713
OliI CACNNNNGTG 1 cut(s) 1023
PagI TCATGA 2 cut(s) 1462, 2104
PceI AGGCCT 1 cut(s) 2241
PciSI GCTCTTC 4 cut(s) 576, 681, 789, 894
PctI GAATGC 4 cut(s) 190, 1376, 1395, 2204
PdmI GAANNNNTTC 4 cut(s) 290, 2062, 2091, 2485
PfeI GAWTC 4 cut(s) 464, 1581, 2101, 2340
PkrI GCNGC 8 cut(s) 553, 583, 796, 1172, 1933, 2044, 2200, 2203
PleI GAGTC 4 cut(s) 217, 434, 625, 2047
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 4 cut(s) 217, 434, 625, 2047
Ppu21I YACGTR 1 cut(s) 302
Psp6I CCWGG 3 cut(s) 269, 2215, 2503
PspCI CACGTG 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 797
PspGI CCWGG 3 cut(s) 269, 2215, 2503
PspN4I GGNNCC 2 cut(s) 726, 2496
PspPI GGNCC 2 cut(s) 1168, 2591
PstI CTGCAG 2 cut(s) 1936, 2203
PsuI RGATCY 5 cut(s) 106, 560, 640, 1416, 1732
PvuII CAGCTG 3 cut(s) 395, 797, 1532
RsaI GTAC 8 cut(s) 531, 670, 690, 1037, 1329, 1507, 2161, 2233
RsaNI GTAC 8 cut(s) 530, 669, 689, 1036, 1328, 1506, 2160, 2232
RseI CAYNNNNRTG 4 cut(s) 1023, 2393, 2438, 2542
SapI GCTCTTC 4 cut(s) 576, 681, 789, 894
SatI GCNGC 8 cut(s) 552, 582, 795, 1171, 1932, 2043, 2199, 2202
Sau96I GGNCC 2 cut(s) 1168, 2591
SchI GAGTC 4 cut(s) 217, 434, 625, 2047
ScrFI CCNGG 4 cut(s) 271, 2217, 2505, 2595
SfaNI GCATC 2 cut(s) 361, 2517
SfcI CTRYAG 4 cut(s) 564, 1719, 1932, 2199
SfuI TTCGAA 2 cut(s) 1618, 1713
SinI GGWCC 1 cut(s) 2591
SmiMI CAYNNNNRTG 4 cut(s) 1023, 2393, 2438, 2542
SmlI CTYRAG 3 cut(s) 633, 1381, 1736
SmoI CTYRAG 3 cut(s) 633, 1381, 1736
SseBI AGGCCT 1 cut(s) 2241
SsiI CCGC 9 cut(s) 219, 253, 551, 581, 672, 1171, 1446, 1868, 2366
SspI AATATT 2 cut(s) 2486, 2601
SspMI CTAG 3 cut(s) 555, 2039, 2520
StuI AGGCCT 1 cut(s) 2241
StyD4I CCNGG 4 cut(s) 269, 2215, 2503, 2593
StyI CCWWGG 3 cut(s) 189, 1071, 1304
TaiI ACGT 4 cut(s) 304, 316, 1639, 2356
TaqI TCGA 6 cut(s) 366, 438, 1056, 1618, 1713, 2056
TatI WGTACW 5 cut(s) 529, 688, 1035, 1327, 2159
TauI GCSGC 3 cut(s) 554, 584, 1173
TfiI GAWTC 4 cut(s) 464, 1581, 2101, 2340
TscAI CASTG 4 cut(s) 488, 1045, 2535, 2627
TseFI GTSAC 3 cut(s) 302, 479, 2530
TseI GCWGC 5 cut(s) 794, 1931, 2042, 2198, 2201
Tsp45I GTSAC 3 cut(s) 302, 479, 2530
TspGWI ACGGA 2 cut(s) 1174, 1269
TspRI CASTG 4 cut(s) 488, 1045, 2535, 2627
Vha464I CTTAAG 1 cut(s) 1381
VpaK11BI GGWCC 1 cut(s) 2591
XagI CCTNNNNNAGG 1 cut(s) 2502
XapI RAATTY 8 cut(s) 210, 1157, 1268, 1400, 1628, 1842, 1882, 1939
XceI RCATGY 5 cut(s) 203, 599, 917, 1150, 1931
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XmnI GAANNNNTTC 4 cut(s) 290, 2062, 2091, 2485
XspI CTAG 3 cut(s) 555, 2039, 2520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.