protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 16 - 41 | 1.1e-07 | Domain of unknown function (DUF4219) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1155 |
| AatII | GACGTC | 1 cut(s) | 120 |
| AciI | CCGC | 2 cut(s) | 192, 479 |
| AclWI | GGATC | 2 cut(s) | 381, 677 |
| AcsI | RAATTY | 2 cut(s) | 279, 1264 |
| AcuI | CTGAAG | 3 cut(s) | 123, 318, 379 |
| AcyI | GRCGYC | 1 cut(s) | 117 |
| AfaI | GTAC | 1 cut(s) | 92 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 314, 418, 692, 693, 869 |
| AflII | CTTAAG | 1 cut(s) | 749 |
| AgsI | TTSAA | 5 cut(s) | 41, 151, 268, 568, 770 |
| AjiI | CACGTC | 2 cut(s) | 352, 520 |
| AluBI | AGCT | 9 cut(s) | 44, 75, 143, 491, 775, 799, 888, 955, 1141 |
| AluI | AGCT | 9 cut(s) | 44, 75, 143, 491, 775, 799, 888, 955, 1141 |
| Alw21I | GWGCWC | 1 cut(s) | 69 |
| Alw26I | GTCTC | 5 cut(s) | 276, 511, 551, 876, 1124 |
| AlwI | GGATC | 2 cut(s) | 381, 677 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 11 |
| ApeKI | GCWGC | 1 cut(s) | 458 |
| ApoI | RAATTY | 2 cut(s) | 279, 1264 |
| AspLEI | GCGC | 1 cut(s) | 794 |
| AspS9I | GGNCC | 1 cut(s) | 409 |
| AsuHPI | GGTGA | 5 cut(s) | 94, 347, 905, 1118, 1242 |
| AsuII | TTCGAA | 1 cut(s) | 1261 |
| AsuNHI | GCTAGC | 1 cut(s) | 947 |
| AvaII | GGWCC | 1 cut(s) | 409 |
| Bbv12I | GWGCWC | 1 cut(s) | 69 |
| BbvI | GCAGC | 1 cut(s) | 470 |
| BccI | CCATC | 5 cut(s) | 91, 128, 326, 362, 1255 |
| BceAI | ACGGC | 2 cut(s) | 331, 609 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1061, 1095 |
| BcoDI | GTCTC | 5 cut(s) | 276, 511, 551, 876, 1124 |
| BfaI | CTAG | 8 cut(s) | 21, 440, 879, 918, 930, 948, 1212, 1269 |
| BfmI | CTRYAG | 4 cut(s) | 12, 258, 851, 1029 |
| BfrI | CTTAAG | 1 cut(s) | 749 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 481 |
| BisI | GCNGC | 1 cut(s) | 459 |
| BlpI | GCTNAGC | 1 cut(s) | 795 |
| BlsI | GCNGC | 1 cut(s) | 460 |
| Bme18I | GGWCC | 1 cut(s) | 409 |
| BmgBI | CACGTC | 2 cut(s) | 352, 520 |
| BmgT120I | GGNCC | 1 cut(s) | 409 |
| BmiI | GGNNCC | 2 cut(s) | 410, 699 |
| BmsI | GCATC | 6 cut(s) | 190, 229, 231, 334, 571, 1081 |
| BmtI | GCTAGC | 1 cut(s) | 951 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 599, 631 |
| BpmI | CTGGAG | 1 cut(s) | 91 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 795 |
| Bpu14I | TTCGAA | 1 cut(s) | 1261 |
| BsaBI | GATNNNNATC | 2 cut(s) | 372, 1062 |
| BsaHI | GRCGYC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 1 cut(s) | 691 |
| BsaWI | WCCGGW | 1 cut(s) | 890 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 314, 418, 692, 693, 869 |
| Bse118I | RCCGGY | 1 cut(s) | 411 |
| Bse1I | ACTGG | 2 cut(s) | 74, 1116 |
| Bse3DI | GCAATG | 1 cut(s) | 873 |
| Bse8I | GATNNNNATC | 2 cut(s) | 372, 1062 |
| BseDI | CCNNGG | 1 cut(s) | 691 |
| BseGI | GGATG | 4 cut(s) | 205, 349, 373, 448 |
| BseJI | GATNNNNATC | 2 cut(s) | 372, 1062 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 314, 418, 692, 693, 869 |
| BseMI | GCAATG | 1 cut(s) | 873 |
| BseMII | CTCAG | 2 cut(s) | 630, 786 |
| BseNI | ACTGG | 2 cut(s) | 74, 1116 |
| BseXI | GCAGC | 1 cut(s) | 470 |
| BsiHKAI | GWGCWC | 1 cut(s) | 69 |
| BsiSI | CCGG | 2 cut(s) | 412, 891 |
| BslFI | GGGAC | 5 cut(s) | 2, 128, 422, 800, 1119 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 314, 418, 692, 693, 869 |
| BsmAI | GTCTC | 5 cut(s) | 276, 511, 551, 876, 1124 |
| BsmFI | GGGAC | 5 cut(s) | 2, 128, 422, 800, 1119 |
| Bsp119I | TTCGAA | 1 cut(s) | 1261 |
| Bsp1286I | GDGCHC | 1 cut(s) | 69 |
| Bsp143I | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 795 |
| BspACI | CCGC | 2 cut(s) | 192, 479 |
| BspCNI | CTCAG | 2 cut(s) | 629, 787 |
| BspHI | TCATGA | 2 cut(s) | 52, 274 |
| BspLI | GGNNCC | 2 cut(s) | 410, 699 |
| BspOI | GCTAGC | 1 cut(s) | 951 |
| BspPI | GGATC | 2 cut(s) | 381, 677 |
| BspT104I | TTCGAA | 1 cut(s) | 1261 |
| BspTI | CTTAAG | 1 cut(s) | 749 |
| BsrDI | GCAATG | 1 cut(s) | 873 |
| BsrFI | RCCGGY | 1 cut(s) | 411 |
| BsrI | ACTGG | 2 cut(s) | 74, 1116 |
| BssAI | RCCGGY | 1 cut(s) | 411 |
| BssECI | CCNNGG | 1 cut(s) | 691 |
| BssMI | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| BssNI | GRCGYC | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 1 cut(s) | 13 |
| Bst6I | CTCTTC | 1 cut(s) | 1041 |
| BstACI | GRCGYC | 1 cut(s) | 117 |
| BstAFI | CTTAAG | 1 cut(s) | 749 |
| BstBI | TTCGAA | 1 cut(s) | 1261 |
| BstC8I | GCNNGC | 6 cut(s) | 174, 477, 720, 927, 949, 953 |
| BstDEI | CTNAG | 3 cut(s) | 494, 616, 795 |
| BstDSI | CCRYGG | 1 cut(s) | 691 |
| BstF5I | GGATG | 4 cut(s) | 205, 349, 373, 448 |
| BstHHI | GCGC | 1 cut(s) | 794 |
| BstKTI | GATC | 6 cut(s) | 376, 630, 685, 1060, 1202, 1274 |
| BstMAI | GTCTC | 5 cut(s) | 276, 511, 551, 876, 1124 |
| BstMBI | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 173, 239, 481, 719 |
| BstNSI | RCATGY | 4 cut(s) | 176, 722, 929, 1280 |
| BstSFI | CTRYAG | 4 cut(s) | 12, 258, 851, 1029 |
| BstV1I | GCAGC | 1 cut(s) | 470 |
| BtgI | CCRYGG | 1 cut(s) | 691 |
| BtgZI | GCGATG | 1 cut(s) | 594 |
| BtrI | CACGTC | 2 cut(s) | 352, 520 |
| BtsCI | GGATG | 4 cut(s) | 205, 349, 373, 448 |
| BtsIMutI | CAGTG | 2 cut(s) | 9, 67 |
| Cac8I | GCNNGC | 6 cut(s) | 174, 477, 720, 927, 949, 953 |
| CaiI | CAGNNNCTG | 1 cut(s) | 11 |
| CciI | TCATGA | 2 cut(s) | 52, 274 |
| CfoI | GCGC | 1 cut(s) | 794 |
| Cfr10I | RCCGGY | 1 cut(s) | 411 |
| Cfr13I | GGNCC | 1 cut(s) | 409 |
| Csp6I | GTAC | 1 cut(s) | 91 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 170, 205, 690, 725 |
| CviAII | CATG | 7 cut(s) | 53, 173, 275, 680, 719, 926, 1277 |
| CviQI | GTAC | 1 cut(s) | 91 |
| DdeI | CTNAG | 3 cut(s) | 494, 616, 795 |
| DpnI | GATC | 6 cut(s) | 375, 629, 684, 1059, 1201, 1273 |
| DpnII | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| Eam1104I | CTCTTC | 1 cut(s) | 1041 |
| EarI | CTCTTC | 1 cut(s) | 1041 |
| Eco47I | GGWCC | 1 cut(s) | 409 |
| Eco57I | CTGAAG | 3 cut(s) | 123, 318, 379 |
| EcoT22I | ATGCAT | 1 cut(s) | 927 |
| FaeI | CATG | 7 cut(s) | 56, 176, 278, 683, 722, 929, 1280 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1038, 1070 |
| FaqI | GGGAC | 5 cut(s) | 2, 128, 422, 800, 1119 |
| FatI | CATG | 7 cut(s) | 52, 172, 274, 679, 718, 925, 1276 |
| FauI | CCCGC | 2 cut(s) | 185, 472 |
| Fnu4HI | GCNGC | 1 cut(s) | 459 |
| FokI | GGATG | 4 cut(s) | 212, 356, 380, 435 |
| Fsp4HI | GCNGC | 1 cut(s) | 459 |
| FspBI | CTAG | 8 cut(s) | 21, 440, 879, 918, 930, 948, 1212, 1269 |
| GlaI | GCGC | 1 cut(s) | 793 |
| GluI | GCNGC | 1 cut(s) | 459 |
| GsuI | CTGGAG | 1 cut(s) | 91 |
| HapII | CCGG | 2 cut(s) | 412, 891 |
| HhaI | GCGC | 1 cut(s) | 794 |
| Hin1I | GRCGYC | 1 cut(s) | 117 |
| Hin1II | CATG | 7 cut(s) | 56, 176, 278, 683, 722, 929, 1280 |
| Hin6I | GCGC | 1 cut(s) | 792 |
| HinP1I | GCGC | 1 cut(s) | 792 |
| HincII | GTYRAC | 1 cut(s) | 304 |
| HindII | GTYRAC | 1 cut(s) | 304 |
| HinfI | GANTC | 5 cut(s) | 206, 323, 338, 614, 896 |
| HpaII | CCGG | 2 cut(s) | 412, 891 |
| HphI | GGTGA | 5 cut(s) | 94, 347, 905, 1118, 1242 |
| Hpy166II | GTNNAC | 2 cut(s) | 304, 742 |
| Hpy188I | TCNGA | 6 cut(s) | 298, 343, 378, 619, 959, 1068 |
| Hpy188III | TCNNGA | 7 cut(s) | 38, 53, 226, 275, 452, 508, 1269 |
| Hpy8I | GTNNAC | 2 cut(s) | 304, 742 |
| Hpy99I | CGWCG | 2 cut(s) | 122, 514 |
| HpyAV | CCTTC | 8 cut(s) | 98, 190, 223, 508, 683, 966, 1171, 1268 |
| HpyCH4III | ACNGT | 1 cut(s) | 13 |
| HpyCH4IV | ACGT | 4 cut(s) | 89, 117, 351, 519 |
| HpyCH4V | TGCA | 5 cut(s) | 172, 386, 645, 718, 925 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 173, 239, 481, 719 |
| HpyF3I | CTNAG | 3 cut(s) | 494, 616, 795 |
| HpySE526I | ACGT | 4 cut(s) | 89, 117, 351, 519 |
| Hsp92I | GRCGYC | 1 cut(s) | 117 |
| Hsp92II | CATG | 7 cut(s) | 56, 176, 278, 683, 722, 929, 1280 |
| HspAI | GCGC | 1 cut(s) | 792 |
| Kzo9I | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| LmnI | GCTCC | 3 cut(s) | 72, 893, 1249 |
| LpnPI | CCDG | 9 cut(s) | 55, 270, 425, 465, 489, 904, 965, 1105, 1129 |
| Lsp1109I | GCAGC | 1 cut(s) | 470 |
| LweI | GCATC | 6 cut(s) | 190, 229, 231, 334, 571, 1081 |
| MaeI | CTAG | 8 cut(s) | 21, 440, 879, 918, 930, 948, 1212, 1269 |
| MaeII | ACGT | 4 cut(s) | 89, 117, 351, 519 |
| MaeIII | GTNAC | 3 cut(s) | 611, 757, 1124 |
| MalI | GATC | 6 cut(s) | 375, 629, 684, 1059, 1201, 1273 |
| MboI | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| MboII | GAAGA | 3 cut(s) | 385, 667, 1058 |
| MfeI | CAATTG | 2 cut(s) | 327, 911 |
| MhlI | GDGCHC | 1 cut(s) | 69 |
| MlyI | GAGTC | 3 cut(s) | 215, 317, 608 |
| MmeI | TCCRAC | 1 cut(s) | 822 |
| MnlI | CCTC | 4 cut(s) | 220, 415, 448, 777 |
| Mph1103I | ATGCAT | 1 cut(s) | 927 |
| MseI | TTAA | 5 cut(s) | 33, 639, 750, 1185, 1206 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1017 |
| MspA1I | CMGCKG | 1 cut(s) | 479 |
| MspCI | CTTAAG | 1 cut(s) | 749 |
| MspI | CCGG | 2 cut(s) | 412, 891 |
| MunI | CAATTG | 2 cut(s) | 327, 911 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 173, 239, 481, 719 |
| NdeII | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| NheI | GCTAGC | 1 cut(s) | 947 |
| NlaIII | CATG | 7 cut(s) | 56, 176, 278, 683, 722, 929, 1280 |
| NlaIV | GGNNCC | 2 cut(s) | 410, 699 |
| NmeAIII | GCCGAG | 2 cut(s) | 229, 555 |
| NmuCI | GTSAC | 2 cut(s) | 611, 1124 |
| NsiI | ATGCAT | 1 cut(s) | 927 |
| NspI | RCATGY | 4 cut(s) | 176, 722, 929, 1280 |
| NspV | TTCGAA | 1 cut(s) | 1261 |
| PaeI | GCATGC | 3 cut(s) | 176, 722, 929 |
| PagI | TCATGA | 2 cut(s) | 52, 274 |
| PfeI | GAWTC | 2 cut(s) | 338, 896 |
| PflFI | GACNNNGTC | 1 cut(s) | 119 |
| PkrI | GCNGC | 1 cut(s) | 460 |
| PleI | GAGTC | 3 cut(s) | 214, 317, 608 |
| PpsI | GAGTC | 3 cut(s) | 214, 317, 608 |
| PsiI | TTATAA | 1 cut(s) | 1155 |
| PspN4I | GGNNCC | 2 cut(s) | 410, 699 |
| PspPI | GGNCC | 1 cut(s) | 409 |
| PstNI | CAGNNNCTG | 1 cut(s) | 11 |
| PsyI | GACNNNGTC | 1 cut(s) | 119 |
| RsaI | GTAC | 1 cut(s) | 92 |
| RsaNI | GTAC | 1 cut(s) | 91 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1017 |
| SaqAI | TTAA | 5 cut(s) | 33, 639, 750, 1185, 1206 |
| SatI | GCNGC | 1 cut(s) | 459 |
| Sau3AI | GATC | 6 cut(s) | 373, 627, 682, 1057, 1199, 1271 |
| Sau96I | GGNCC | 1 cut(s) | 409 |
| SchI | GAGTC | 3 cut(s) | 215, 317, 608 |
| SduI | GDGCHC | 1 cut(s) | 69 |
| SfaNI | GCATC | 6 cut(s) | 190, 229, 231, 334, 571, 1081 |
| SfcI | CTRYAG | 4 cut(s) | 12, 258, 851, 1029 |
| SfuI | TTCGAA | 1 cut(s) | 1261 |
| SinI | GGWCC | 1 cut(s) | 409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1017 |
| SmlI | CTYRAG | 1 cut(s) | 749 |
| SmoI | CTYRAG | 1 cut(s) | 749 |
| SphI | GCATGC | 3 cut(s) | 176, 722, 929 |
| SsiI | CCGC | 2 cut(s) | 192, 479 |
| SspMI | CTAG | 8 cut(s) | 21, 440, 879, 918, 930, 948, 1212, 1269 |
| TaaI | ACNGT | 1 cut(s) | 13 |
| TaiI | ACGT | 4 cut(s) | 92, 120, 354, 522 |
| TaqI | TCGA | 5 cut(s) | 225, 509, 630, 1198, 1261 |
| TfiI | GAWTC | 2 cut(s) | 338, 896 |
| Tru1I | TTAA | 5 cut(s) | 33, 639, 750, 1185, 1206 |
| Tru9I | TTAA | 5 cut(s) | 33, 639, 750, 1185, 1206 |
| TscAI | CASTG | 2 cut(s) | 16, 74 |
| TseFI | GTSAC | 2 cut(s) | 611, 1124 |
| TseI | GCWGC | 1 cut(s) | 458 |
| Tsp45I | GTSAC | 2 cut(s) | 611, 1124 |
| TspDTI | ATGAA | 3 cut(s) | 291, 566, 1251 |
| TspGWI | ACGGA | 1 cut(s) | 1112 |
| TspRI | CASTG | 2 cut(s) | 16, 74 |
| Tth111I | GACNNNGTC | 1 cut(s) | 119 |
| Vha464I | CTTAAG | 1 cut(s) | 749 |
| VpaK11BI | GGWCC | 1 cut(s) | 409 |
| XapI | RAATTY | 2 cut(s) | 279, 1264 |
| XbaI | TCTAGA | 1 cut(s) | 1268 |
| XceI | RCATGY | 4 cut(s) | 176, 722, 929, 1280 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 131, 1170 |
| XspI | CTAG | 8 cut(s) | 21, 440, 879, 918, 930, 948, 1212, 1269 |
| ZraI | GACGTC | 1 cut(s) | 118 |
| Zsp2I | ATGCAT | 1 cut(s) | 927 |