protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ank_2 | PF12796 | 35 - 106 | 1.3e-11 | Ankyrin repeats (3 copies) |
| Ank_5 | PF13857 | 52 - 95 | 7e-06 | Ankyrin repeats (many copies) |
| Ank_4 | PF13637 | 57 - 105 | 2.6e-06 | Ankyrin repeats (many copies) |
| Ank_2 | PF12796 | 75 - 143 | 2.6e-10 | Ankyrin repeats (3 copies) |
| Ank_2 | PF12796 | 115 - 179 | 3.9e-07 | Ankyrin repeats (3 copies) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 322 |
| AccBSI | CCGCTC | 1 cut(s) | 272 |
| AciI | CCGC | 4 cut(s) | 270, 769, 809, 1044 |
| AclWI | GGATC | 4 cut(s) | 166, 1022, 1201, 1338 |
| AcoI | YGGCCR | 1 cut(s) | 909 |
| AcsI | RAATTY | 5 cut(s) | 755, 866, 998, 1226, 1440 |
| AcvI | CACGTG | 1 cut(s) | 514 |
| AcyI | GRCGYC | 1 cut(s) | 1638 |
| AdeI | CACNNNGTG | 1 cut(s) | 1503 |
| AfaI | GTAC | 6 cut(s) | 129, 288, 635, 927, 1105, 1585 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 907 |
| AflII | CTTAAG | 1 cut(s) | 979 |
| AgsI | TTSAA | 8 cut(s) | 505, 894, 920, 1083, 1226, 1424, 1601, 1659 |
| AjnI | CCWGG | 1 cut(s) | 4 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 17, 49 |
| Alw26I | GTCTC | 4 cut(s) | 328, 621, 963, 1129 |
| AlwI | GGATC | 4 cut(s) | 166, 1022, 1201, 1338 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1558 |
| AoxI | GGCC | 2 cut(s) | 766, 909 |
| ApeKI | GCWGC | 4 cut(s) | 149, 179, 392, 1552 |
| ApoI | RAATTY | 5 cut(s) | 755, 866, 998, 1226, 1440 |
| AspS9I | GGNCC | 1 cut(s) | 766 |
| AsuHPI | GGTGA | 3 cut(s) | 89, 383, 1256 |
| AsuII | TTCGAA | 1 cut(s) | 1311 |
| BaeGI | GKGCMC | 1 cut(s) | 513 |
| BalI | TGGCCA | 1 cut(s) | 911 |
| BanI | GGYRCC | 1 cut(s) | 322 |
| BbrPI | CACGTG | 1 cut(s) | 514 |
| BbvI | GCAGC | 4 cut(s) | 161, 191, 404, 1564 |
| BccI | CCATC | 3 cut(s) | 566, 816, 1091 |
| BceAI | ACGGC | 2 cut(s) | 310, 603 |
| BciT130I | CCWGG | 1 cut(s) | 6 |
| BcoDI | GTCTC | 4 cut(s) | 328, 621, 963, 1129 |
| BfaI | CTAG | 1 cut(s) | 153 |
| BfmI | CTRYAG | 2 cut(s) | 162, 1317 |
| BfrI | CTTAAG | 1 cut(s) | 979 |
| BglII | AGATCT | 1 cut(s) | 238 |
| BisI | GCNGC | 6 cut(s) | 150, 180, 393, 769, 809, 1553 |
| BlsI | GCNGC | 6 cut(s) | 151, 181, 394, 770, 810, 1554 |
| Bme1390I | CCNGG | 1 cut(s) | 6 |
| BmgT120I | GGNCC | 1 cut(s) | 766 |
| BmiI | GGNNCC | 1 cut(s) | 324 |
| BmrFI | CCNGG | 1 cut(s) | 6 |
| BmrI | ACTGGG | 1 cut(s) | 91 |
| BmuI | ACTGGG | 1 cut(s) | 91 |
| BpmI | CTGGAG | 1 cut(s) | 25 |
| Bpu10I | CCTNAGC | 1 cut(s) | 93 |
| Bpu14I | TTCGAA | 1 cut(s) | 1311 |
| BpuEI | CTTGAG | 2 cut(s) | 216, 1355 |
| Bsa29I | ATCGAT | 2 cut(s) | 1695, 1699 |
| BsaAI | YACGTR | 1 cut(s) | 514 |
| BsaHI | GRCGYC | 1 cut(s) | 1638 |
| BsaJI | CCNNGG | 5 cut(s) | 669, 791, 878, 902, 912 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 907 |
| Bse1I | ACTGG | 2 cut(s) | 86, 728 |
| Bse3DI | GCAATG | 1 cut(s) | 174 |
| BseBI | CCWGG | 1 cut(s) | 6 |
| BseCI | ATCGAT | 2 cut(s) | 1695, 1699 |
| BseDI | CCNNGG | 5 cut(s) | 669, 791, 878, 902, 912 |
| BseGI | GGATG | 4 cut(s) | 1120, 1224, 1270, 1393 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 907 |
| BseMI | GCAATG | 1 cut(s) | 174 |
| BseMII | CTCAG | 2 cut(s) | 1101, 1140 |
| BseNI | ACTGG | 2 cut(s) | 86, 728 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 513 |
| BseXI | GCAGC | 4 cut(s) | 161, 191, 404, 1564 |
| BseYI | CCCAGC | 1 cut(s) | 395 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1699 |
| BshFI | GGCC | 2 cut(s) | 768, 911 |
| BshNI | GGYRCC | 1 cut(s) | 322 |
| BshVI | ATCGAT | 2 cut(s) | 1695, 1699 |
| BsiEI | CGRYCG | 1 cut(s) | 1699 |
| BslFI | GGGAC | 1 cut(s) | 896 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 907 |
| BsmAI | GTCTC | 4 cut(s) | 328, 621, 963, 1129 |
| BsmBI | CGTCTC | 1 cut(s) | 621 |
| BsmFI | GGGAC | 1 cut(s) | 896 |
| BsmI | GAATGC | 2 cut(s) | 974, 993 |
| BsnI | GGCC | 2 cut(s) | 768, 911 |
| Bsp119I | TTCGAA | 1 cut(s) | 1311 |
| Bsp1286I | GDGCHC | 1 cut(s) | 513 |
| Bsp1407I | TGTACA | 1 cut(s) | 925 |
| Bsp19I | CCATGG | 1 cut(s) | 669 |
| BspACI | CCGC | 4 cut(s) | 270, 769, 809, 1044 |
| BspANI | GGCC | 2 cut(s) | 768, 911 |
| BspCNI | CTCAG | 2 cut(s) | 1100, 1139 |
| BspDI | ATCGAT | 2 cut(s) | 1695, 1699 |
| BspHI | TCATGA | 1 cut(s) | 1060 |
| BspLI | GGNNCC | 1 cut(s) | 324 |
| BspPI | GGATC | 4 cut(s) | 166, 1022, 1201, 1338 |
| BspQI | GCTCTTC | 4 cut(s) | 174, 279, 387, 492 |
| BspT104I | TTCGAA | 1 cut(s) | 1311 |
| BspT107I | GGYRCC | 1 cut(s) | 322 |
| BspTI | CTTAAG | 1 cut(s) | 979 |
| BsrBI | CCGCTC | 1 cut(s) | 272 |
| BsrDI | GCAATG | 1 cut(s) | 174 |
| BsrGI | TGTACA | 1 cut(s) | 925 |
| BsrI | ACTGG | 2 cut(s) | 86, 728 |
| BssECI | CCNNGG | 5 cut(s) | 669, 791, 878, 902, 912 |
| BssNI | GRCGYC | 1 cut(s) | 1638 |
| BssT1I | CCWWGG | 2 cut(s) | 669, 902 |
| Bst2UI | CCWGG | 1 cut(s) | 6 |
| Bst4CI | ACNGT | 5 cut(s) | 20, 638, 916, 925, 1460 |
| Bst6I | CTCTTC | 4 cut(s) | 174, 279, 387, 492 |
| BstACI | GRCGYC | 1 cut(s) | 1638 |
| BstAFI | CTTAAG | 1 cut(s) | 979 |
| BstAUI | TGTACA | 1 cut(s) | 925 |
| BstBAI | YACGTR | 1 cut(s) | 514 |
| BstBI | TTCGAA | 1 cut(s) | 1311 |
| BstC8I | GCNNGC | 2 cut(s) | 742, 1504 |
| BstDEI | CTNAG | 4 cut(s) | 93, 131, 1087, 1126 |
| BstDSI | CCRYGG | 4 cut(s) | 669, 791, 878, 912 |
| BstF5I | GGATG | 4 cut(s) | 1120, 1224, 1270, 1393 |
| BstMAI | GTCTC | 4 cut(s) | 328, 621, 963, 1129 |
| BstMCI | CGRYCG | 1 cut(s) | 1699 |
| BstNI | CCWGG | 1 cut(s) | 6 |
| BstNSI | RCATGY | 2 cut(s) | 197, 748 |
| BstSCI | CCNGG | 1 cut(s) | 4 |
| BstSFI | CTRYAG | 2 cut(s) | 162, 1317 |
| BstSLI | GKGCMC | 1 cut(s) | 513 |
| BstV1I | GCAGC | 4 cut(s) | 161, 191, 404, 1564 |
| BstX2I | RGATCY | 4 cut(s) | 158, 238, 1014, 1330 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 427 |
| BstYI | RGATCY | 4 cut(s) | 158, 238, 1014, 1330 |
| Bsu15I | ATCGAT | 2 cut(s) | 1695, 1699 |
| BsuRI | GGCC | 2 cut(s) | 768, 911 |
| BsuTUI | ATCGAT | 2 cut(s) | 1695, 1699 |
| BtgI | CCRYGG | 4 cut(s) | 669, 791, 878, 912 |
| BtsCI | GGATG | 4 cut(s) | 1120, 1224, 1270, 1393 |
| BtsIMutI | CAGTG | 1 cut(s) | 643 |
| Cac8I | GCNNGC | 2 cut(s) | 742, 1504 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1558 |
| CciI | TCATGA | 1 cut(s) | 1060 |
| Cfr13I | GGNCC | 1 cut(s) | 766 |
| ClaI | ATCGAT | 2 cut(s) | 1695, 1699 |
| CseI | GACGC | 2 cut(s) | 314, 1627 |
| Csp6I | GTAC | 6 cut(s) | 128, 287, 634, 926, 1104, 1584 |
| CviAII | CATG | 8 cut(s) | 194, 386, 670, 745, 929, 1061, 1211, 1240 |
| CviQI | GTAC | 6 cut(s) | 128, 287, 634, 926, 1104, 1584 |
| DdeI | CTNAG | 4 cut(s) | 93, 131, 1087, 1126 |
| DraI | TTTAAA | 1 cut(s) | 1510 |
| DraIII | CACNNNGTG | 1 cut(s) | 1503 |
| EaeI | YGGCCR | 1 cut(s) | 909 |
| Eam1104I | CTCTTC | 4 cut(s) | 174, 279, 387, 492 |
| EarI | CTCTTC | 4 cut(s) | 174, 279, 387, 492 |
| Eco130I | CCWWGG | 2 cut(s) | 669, 902 |
| Eco72I | CACGTG | 1 cut(s) | 514 |
| EcoRII | CCWGG | 1 cut(s) | 4 |
| EcoT14I | CCWWGG | 2 cut(s) | 669, 902 |
| ErhI | CCWWGG | 2 cut(s) | 669, 902 |
| Esp3I | CGTCTC | 1 cut(s) | 621 |
| FaeI | CATG | 8 cut(s) | 197, 389, 673, 748, 932, 1064, 1214, 1243 |
| FaqI | GGGAC | 1 cut(s) | 896 |
| FatI | CATG | 8 cut(s) | 193, 385, 669, 744, 928, 1060, 1210, 1239 |
| FauI | CCCGC | 1 cut(s) | 1051 |
| Fnu4HI | GCNGC | 6 cut(s) | 150, 180, 393, 769, 809, 1553 |
| FokI | GGATG | 4 cut(s) | 1127, 1231, 1277, 1400 |
| Fsp4HI | GCNGC | 6 cut(s) | 150, 180, 393, 769, 809, 1553 |
| FspBI | CTAG | 1 cut(s) | 153 |
| GluI | GCNGC | 6 cut(s) | 150, 180, 393, 769, 809, 1553 |
| GsaI | CCCAGC | 1 cut(s) | 399 |
| GsuI | CTGGAG | 1 cut(s) | 25 |
| HaeIII | GGCC | 2 cut(s) | 768, 911 |
| HgaI | GACGC | 2 cut(s) | 314, 1627 |
| Hin1I | GRCGYC | 1 cut(s) | 1638 |
| Hin1II | CATG | 8 cut(s) | 197, 389, 673, 748, 932, 1064, 1214, 1243 |
| HincII | GTYRAC | 1 cut(s) | 1156 |
| HindII | GTYRAC | 1 cut(s) | 1156 |
| HindIII | AAGCTT | 3 cut(s) | 555, 798, 1660 |
| HinfI | GANTC | 4 cut(s) | 38, 62, 229, 1179 |
| HpaI | GTTAAC | 1 cut(s) | 1156 |
| HphI | GGTGA | 3 cut(s) | 89, 383, 1256 |
| Hpy166II | GTNNAC | 5 cut(s) | 304, 1156, 1378, 1520, 1529 |
| Hpy188I | TCNGA | 5 cut(s) | 15, 945, 1090, 1218, 1570 |
| Hpy188III | TCNNGA | 6 cut(s) | 233, 242, 502, 1061, 1334, 1433 |
| Hpy8I | GTNNAC | 5 cut(s) | 304, 1156, 1378, 1520, 1529 |
| Hpy99I | CGWCG | 1 cut(s) | 1643 |
| HpyAV | CCTTC | 6 cut(s) | 182, 286, 635, 856, 1016, 1595 |
| HpyCH4III | ACNGT | 5 cut(s) | 20, 638, 916, 925, 1460 |
| HpyCH4IV | ACGT | 3 cut(s) | 513, 1234, 1682 |
| HpyF3I | CTNAG | 4 cut(s) | 93, 131, 1087, 1126 |
| HpySE526I | ACGT | 3 cut(s) | 513, 1234, 1682 |
| Hsp92I | GRCGYC | 1 cut(s) | 1638 |
| Hsp92II | CATG | 8 cut(s) | 197, 389, 673, 748, 932, 1064, 1214, 1243 |
| KspAI | GTTAAC | 1 cut(s) | 1156 |
| LguI | GCTCTTC | 4 cut(s) | 174, 279, 387, 492 |
| LmnI | GCTCC | 3 cut(s) | 644, 857, 1045 |
| Lsp1109I | GCAGC | 4 cut(s) | 161, 191, 404, 1564 |
| MaeI | CTAG | 1 cut(s) | 153 |
| MaeII | ACGT | 3 cut(s) | 513, 1234, 1682 |
| MaeIII | GTNAC | 2 cut(s) | 77, 784 |
| MbiI | CCGCTC | 1 cut(s) | 272 |
| MfeI | CAATTG | 3 cut(s) | 475, 761, 1596 |
| MflI | RGATCY | 4 cut(s) | 158, 238, 1014, 1330 |
| MhlI | GDGCHC | 1 cut(s) | 513 |
| MlsI | TGGCCA | 1 cut(s) | 911 |
| MluNI | TGGCCA | 1 cut(s) | 911 |
| MlyI | GAGTC | 2 cut(s) | 32, 223 |
| MmeI | TCCRAC | 2 cut(s) | 48, 495 |
| Mox20I | TGGCCA | 1 cut(s) | 911 |
| MscI | TGGCCA | 1 cut(s) | 911 |
| MseI | TTAA | 9 cut(s) | 663, 752, 803, 980, 1155, 1287, 1494, 1509, 1535 |
| Msp20I | TGGCCA | 1 cut(s) | 911 |
| MspA1I | CMGCKG | 2 cut(s) | 395, 1130 |
| MspCI | CTTAAG | 1 cut(s) | 979 |
| MspR9I | CCNGG | 1 cut(s) | 6 |
| MunI | CAATTG | 3 cut(s) | 475, 761, 1596 |
| Mva1269I | GAATGC | 2 cut(s) | 974, 993 |
| MvaI | CCWGG | 1 cut(s) | 6 |
| NcoI | CCATGG | 1 cut(s) | 669 |
| NlaIII | CATG | 8 cut(s) | 197, 389, 673, 748, 932, 1064, 1214, 1243 |
| NlaIV | GGNNCC | 1 cut(s) | 324 |
| NmuCI | GTSAC | 1 cut(s) | 77 |
| NspI | RCATGY | 2 cut(s) | 197, 748 |
| NspV | TTCGAA | 1 cut(s) | 1311 |
| PagI | TCATGA | 1 cut(s) | 1060 |
| PciSI | GCTCTTC | 4 cut(s) | 174, 279, 387, 492 |
| PctI | GAATGC | 2 cut(s) | 974, 993 |
| PfeI | GAWTC | 2 cut(s) | 62, 1179 |
| PkrI | GCNGC | 6 cut(s) | 151, 181, 394, 770, 810, 1554 |
| Ple19I | CGATCG | 1 cut(s) | 1699 |
| PleI | GAGTC | 2 cut(s) | 32, 223 |
| PmaCI | CACGTG | 1 cut(s) | 514 |
| PmlI | CACGTG | 1 cut(s) | 514 |
| PpsI | GAGTC | 2 cut(s) | 32, 223 |
| Ppu21I | YACGTR | 1 cut(s) | 514 |
| Psp6I | CCWGG | 1 cut(s) | 4 |
| PspCI | CACGTG | 1 cut(s) | 514 |
| PspFI | CCCAGC | 1 cut(s) | 395 |
| PspGI | CCWGG | 1 cut(s) | 4 |
| PspN4I | GGNNCC | 1 cut(s) | 324 |
| PspPI | GGNCC | 1 cut(s) | 766 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1558 |
| PsuI | RGATCY | 4 cut(s) | 158, 238, 1014, 1330 |
| PvuI | CGATCG | 1 cut(s) | 1699 |
| PvuII | CAGCTG | 2 cut(s) | 395, 1130 |
| RsaI | GTAC | 6 cut(s) | 129, 288, 635, 927, 1105, 1585 |
| RsaNI | GTAC | 6 cut(s) | 128, 287, 634, 926, 1104, 1584 |
| SapI | GCTCTTC | 4 cut(s) | 174, 279, 387, 492 |
| SaqAI | TTAA | 9 cut(s) | 663, 752, 803, 980, 1155, 1287, 1494, 1509, 1535 |
| SatI | GCNGC | 6 cut(s) | 150, 180, 393, 769, 809, 1553 |
| Sau96I | GGNCC | 1 cut(s) | 766 |
| SchI | GAGTC | 2 cut(s) | 32, 223 |
| ScrFI | CCNGG | 1 cut(s) | 6 |
| SduI | GDGCHC | 1 cut(s) | 513 |
| SfcI | CTRYAG | 2 cut(s) | 162, 1317 |
| SfuI | TTCGAA | 1 cut(s) | 1311 |
| SmlI | CTYRAG | 3 cut(s) | 231, 979, 1334 |
| SmoI | CTYRAG | 3 cut(s) | 231, 979, 1334 |
| SsiI | CCGC | 4 cut(s) | 270, 769, 809, 1044 |
| SspMI | CTAG | 1 cut(s) | 153 |
| StyD4I | CCNGG | 1 cut(s) | 4 |
| StyI | CCWWGG | 2 cut(s) | 669, 902 |
| TaaI | ACNGT | 5 cut(s) | 20, 638, 916, 925, 1460 |
| TaiI | ACGT | 3 cut(s) | 516, 1237, 1685 |
| TaqI | TCGA | 5 cut(s) | 36, 654, 1311, 1695, 1699 |
| TatI | WGTACW | 5 cut(s) | 127, 286, 633, 925, 1583 |
| TauI | GCSGC | 2 cut(s) | 771, 811 |
| TfiI | GAWTC | 2 cut(s) | 62, 1179 |
| Tru1I | TTAA | 9 cut(s) | 663, 752, 803, 980, 1155, 1287, 1494, 1509, 1535 |
| Tru9I | TTAA | 9 cut(s) | 663, 752, 803, 980, 1155, 1287, 1494, 1509, 1535 |
| TscAI | CASTG | 1 cut(s) | 643 |
| TseFI | GTSAC | 1 cut(s) | 77 |
| TseI | GCWGC | 4 cut(s) | 149, 179, 392, 1552 |
| Tsp45I | GTSAC | 1 cut(s) | 77 |
| TspDTI | ATGAA | 9 cut(s) | 63, 374, 1035, 1049, 1209, 1214, 1310, 1400, 1404 |
| TspGWI | ACGGA | 3 cut(s) | 772, 867, 1645 |
| TspRI | CASTG | 1 cut(s) | 643 |
| Vha464I | CTTAAG | 1 cut(s) | 979 |
| XapI | RAATTY | 5 cut(s) | 755, 866, 998, 1226, 1440 |
| XceI | RCATGY | 2 cut(s) | 197, 748 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 692, 1555 |
| XspI | CTAG | 1 cut(s) | 153 |