protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 427 - 512 | 1.9e-18 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 783, 951 |
| AccBSI | CCGCTC | 3 cut(s) | 242, 493, 721 |
| AciI | CCGC | 6 cut(s) | 240, 483, 491, 529, 721, 924 |
| AclI | AACGTT | 1 cut(s) | 397 |
| AcoI | YGGCCR | 1 cut(s) | 456 |
| AcsI | RAATTY | 3 cut(s) | 318, 508, 850 |
| AcuI | CTGAAG | 1 cut(s) | 1539 |
| AfaI | GTAC | 4 cut(s) | 283, 335, 879, 1309 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 502 |
| AjnI | CCWGG | 1 cut(s) | 1363 |
| AluBI | AGCT | 3 cut(s) | 47, 92, 1361 |
| AluI | AGCT | 3 cut(s) | 47, 92, 1361 |
| Alw21I | GWGCWC | 1 cut(s) | 1324 |
| Alw26I | GTCTC | 1 cut(s) | 1459 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 910, 1364 |
| AoxI | GGCC | 5 cut(s) | 156, 456, 488, 584, 1012 |
| ApeKI | GCWGC | 2 cut(s) | 1346, 1349 |
| ApoI | RAATTY | 3 cut(s) | 318, 508, 850 |
| AspS9I | GGNCC | 3 cut(s) | 157, 584, 724 |
| AsuHPI | GGTGA | 2 cut(s) | 1324, 1379 |
| AvaII | GGWCC | 1 cut(s) | 724 |
| AxyI | CCTNAGG | 1 cut(s) | 631 |
| BalI | TGGCCA | 1 cut(s) | 458 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 1324 |
| BbvI | GCAGC | 2 cut(s) | 1333, 1361 |
| BccI | CCATC | 1 cut(s) | 557 |
| BciT130I | CCWGG | 1 cut(s) | 1365 |
| BciVI | GTATCC | 1 cut(s) | 536 |
| BclI | TGATCA | 2 cut(s) | 577, 1114 |
| BcoDI | GTCTC | 1 cut(s) | 1459 |
| BfaI | CTAG | 2 cut(s) | 146, 656 |
| BfmI | CTRYAG | 2 cut(s) | 420, 1347 |
| BfuI | GTATCC | 1 cut(s) | 536 |
| BglII | AGATCT | 2 cut(s) | 373, 1396 |
| BisI | GCNGC | 5 cut(s) | 240, 491, 924, 1347, 1350 |
| BlsI | GCNGC | 5 cut(s) | 241, 492, 925, 1348, 1351 |
| Bme1390I | CCNGG | 1 cut(s) | 1365 |
| Bme18I | GGWCC | 1 cut(s) | 724 |
| BmgT120I | GGNCC | 3 cut(s) | 157, 584, 724 |
| BmiI | GGNNCC | 1 cut(s) | 725 |
| BmrFI | CCNGG | 1 cut(s) | 1365 |
| BmsI | GCATC | 4 cut(s) | 226, 625, 979, 1438 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| Bsa29I | ATCGAT | 1 cut(s) | 234 |
| BsaJI | CCNNGG | 5 cut(s) | 160, 414, 1060, 1191, 1476 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 502 |
| Bse1I | ACTGG | 2 cut(s) | 35, 459 |
| Bse21I | CCTNAGG | 1 cut(s) | 631 |
| Bse3DI | GCAATG | 3 cut(s) | 12, 1047, 1179 |
| BseBI | CCWGG | 1 cut(s) | 1365 |
| BseCI | ATCGAT | 1 cut(s) | 234 |
| BseDI | CCNNGG | 5 cut(s) | 160, 414, 1060, 1191, 1476 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BseMI | GCAATG | 3 cut(s) | 12, 1047, 1179 |
| BseMII | CTCAG | 1 cut(s) | 645 |
| BseNI | ACTGG | 2 cut(s) | 35, 459 |
| BseXI | GCAGC | 2 cut(s) | 1333, 1361 |
| BshFI | GGCC | 5 cut(s) | 158, 458, 490, 586, 1014 |
| BshVI | ATCGAT | 1 cut(s) | 234 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1324 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BsmAI | GTCTC | 1 cut(s) | 1459 |
| BsmI | GAATGC | 4 cut(s) | 101, 473, 1352, 1497 |
| BsnI | GGCC | 5 cut(s) | 158, 458, 490, 586, 1014 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1324 |
| Bsp1407I | TGTACA | 1 cut(s) | 1307 |
| Bsp143I | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| Bsp19I | CCATGG | 1 cut(s) | 414 |
| BspACI | CCGC | 6 cut(s) | 240, 483, 491, 529, 721, 924 |
| BspANI | GGCC | 5 cut(s) | 158, 458, 490, 586, 1014 |
| BspCNI | CTCAG | 1 cut(s) | 644 |
| BspDI | ATCGAT | 1 cut(s) | 234 |
| BspLI | GGNNCC | 1 cut(s) | 725 |
| BspMAI | CTGCAG | 1 cut(s) | 1351 |
| BsrBI | CCGCTC | 3 cut(s) | 242, 493, 721 |
| BsrDI | GCAATG | 3 cut(s) | 12, 1047, 1179 |
| BsrGI | TGTACA | 1 cut(s) | 1307 |
| BsrI | ACTGG | 2 cut(s) | 35, 459 |
| BssECI | CCNNGG | 5 cut(s) | 160, 414, 1060, 1191, 1476 |
| BssMI | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| BssT1I | CCWWGG | 3 cut(s) | 160, 414, 1191 |
| Bst2UI | CCWGG | 1 cut(s) | 1365 |
| Bst4CI | ACNGT | 7 cut(s) | 260, 467, 563, 732, 810, 1084, 1312 |
| Bst6I | CTCTTC | 1 cut(s) | 294 |
| BstAUI | TGTACA | 1 cut(s) | 1307 |
| BstC8I | GCNNGC | 1 cut(s) | 190 |
| BstDEI | CTNAG | 2 cut(s) | 445, 631 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstKTI | GATC | 5 cut(s) | 376, 516, 580, 1117, 1399 |
| BstMAI | GTCTC | 1 cut(s) | 1459 |
| BstMBI | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1358 |
| BstNI | CCWGG | 1 cut(s) | 1365 |
| BstNSI | RCATGY | 1 cut(s) | 836 |
| BstSCI | CCNGG | 1 cut(s) | 1363 |
| BstSFI | CTRYAG | 2 cut(s) | 420, 1347 |
| BstV1I | GCAGC | 2 cut(s) | 1333, 1361 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstX2I | RGATCY | 2 cut(s) | 373, 1396 |
| BstYI | RGATCY | 2 cut(s) | 373, 1396 |
| Bsu15I | ATCGAT | 1 cut(s) | 234 |
| Bsu36I | CCTNAGG | 1 cut(s) | 631 |
| BsuI | GTATCC | 1 cut(s) | 536 |
| BsuRI | GGCC | 5 cut(s) | 158, 458, 490, 586, 1014 |
| BsuTUI | ATCGAT | 1 cut(s) | 234 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsI | GCAGTG | 1 cut(s) | 762 |
| BtsIMutI | CAGTG | 2 cut(s) | 762, 806 |
| Cac8I | GCNNGC | 1 cut(s) | 190 |
| CaiI | CAGNNNCTG | 2 cut(s) | 910, 1364 |
| Cfr13I | GGNCC | 3 cut(s) | 157, 584, 724 |
| ClaI | ATCGAT | 1 cut(s) | 234 |
| Csp6I | GTAC | 4 cut(s) | 282, 334, 878, 1308 |
| CviAII | CATG | 7 cut(s) | 100, 381, 415, 521, 716, 745, 833 |
| CviQI | GTAC | 4 cut(s) | 282, 334, 878, 1308 |
| DdeI | CTNAG | 2 cut(s) | 445, 631 |
| DpnI | GATC | 5 cut(s) | 375, 515, 579, 1116, 1398 |
| DpnII | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| EaeI | YGGCCR | 1 cut(s) | 456 |
| Eam1104I | CTCTTC | 1 cut(s) | 294 |
| EarI | CTCTTC | 1 cut(s) | 294 |
| Eco130I | CCWWGG | 3 cut(s) | 160, 414, 1191 |
| Eco47I | GGWCC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 1 cut(s) | 1539 |
| Eco81I | CCTNAGG | 1 cut(s) | 631 |
| EcoO109I | RGGNCCY | 1 cut(s) | 584 |
| EcoRII | CCWGG | 1 cut(s) | 1363 |
| EcoT14I | CCWWGG | 3 cut(s) | 160, 414, 1191 |
| EcoT22I | ATGCAT | 1 cut(s) | 101 |
| ErhI | CCWWGG | 3 cut(s) | 160, 414, 1191 |
| FaeI | CATG | 7 cut(s) | 103, 384, 418, 524, 719, 748, 836 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 978, 1010 |
| FatI | CATG | 7 cut(s) | 99, 380, 414, 520, 715, 744, 832 |
| FauI | CCCGC | 1 cut(s) | 714 |
| FbaI | TGATCA | 2 cut(s) | 577, 1114 |
| Fnu4HI | GCNGC | 5 cut(s) | 240, 491, 924, 1347, 1350 |
| Fsp4HI | GCNGC | 5 cut(s) | 240, 491, 924, 1347, 1350 |
| FspBI | CTAG | 2 cut(s) | 146, 656 |
| GluI | GCNGC | 5 cut(s) | 240, 491, 924, 1347, 1350 |
| HaeIII | GGCC | 5 cut(s) | 158, 458, 490, 586, 1014 |
| Hin1II | CATG | 7 cut(s) | 103, 384, 418, 524, 719, 748, 836 |
| HinfI | GANTC | 4 cut(s) | 391, 684, 1202, 1249 |
| HphI | GGTGA | 2 cut(s) | 1324, 1379 |
| Hpy188I | TCNGA | 9 cut(s) | 136, 650, 702, 906, 974, 1006, 1024, 1447, 1519 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 633, 1206 |
| HpyAV | CCTTC | 7 cut(s) | 480, 551, 555, 645, 758, 1025, 1282 |
| HpyCH4III | ACNGT | 7 cut(s) | 260, 467, 563, 732, 810, 1084, 1312 |
| HpyCH4IV | ACGT | 2 cut(s) | 397, 1510 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1358 |
| HpyF3I | CTNAG | 2 cut(s) | 445, 631 |
| HpySE526I | ACGT | 2 cut(s) | 397, 1510 |
| Hsp92II | CATG | 7 cut(s) | 103, 384, 418, 524, 719, 748, 836 |
| Ksp22I | TGATCA | 2 cut(s) | 577, 1114 |
| Kzo9I | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| LmnI | GCTCC | 2 cut(s) | 498, 1366 |
| LpnPI | CCDG | 9 cut(s) | 16, 87, 472, 618, 888, 923, 1191, 1350, 1377 |
| Lsp1109I | GCAGC | 2 cut(s) | 1333, 1361 |
| LweI | GCATC | 4 cut(s) | 226, 625, 979, 1438 |
| MaeI | CTAG | 2 cut(s) | 146, 656 |
| MaeII | ACGT | 2 cut(s) | 397, 1510 |
| MaeIII | GTNAC | 7 cut(s) | 312, 448, 461, 563, 935, 1104, 1330 |
| MalI | GATC | 5 cut(s) | 375, 515, 579, 1116, 1398 |
| MbiI | CCGCTC | 3 cut(s) | 242, 493, 721 |
| MboI | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| MboII | GAAGA | 6 cut(s) | 260, 281, 659, 1391, 1458, 1532 |
| MflI | RGATCY | 2 cut(s) | 373, 1396 |
| MhlI | GDGCHC | 1 cut(s) | 1324 |
| MlsI | TGGCCA | 1 cut(s) | 458 |
| MluNI | TGGCCA | 1 cut(s) | 458 |
| MmeI | TCCRAC | 2 cut(s) | 114, 751 |
| Mox20I | TGGCCA | 1 cut(s) | 458 |
| Mph1103I | ATGCAT | 1 cut(s) | 101 |
| MscI | TGGCCA | 1 cut(s) | 458 |
| MseI | TTAA | 2 cut(s) | 105, 1412 |
| MslI | CAYNNNNRTG | 5 cut(s) | 570, 942, 1023, 1337, 1549 |
| Msp20I | TGGCCA | 1 cut(s) | 458 |
| MspA1I | CMGCKG | 1 cut(s) | 926 |
| MspR9I | CCNGG | 1 cut(s) | 1365 |
| Mva1269I | GAATGC | 4 cut(s) | 101, 473, 1352, 1497 |
| MvaI | CCWGG | 1 cut(s) | 1365 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1358 |
| NcoI | CCATGG | 1 cut(s) | 414 |
| NdeII | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| NlaIII | CATG | 7 cut(s) | 103, 384, 418, 524, 719, 748, 836 |
| NlaIV | GGNNCC | 1 cut(s) | 725 |
| NmeAIII | GCCGAG | 1 cut(s) | 1041 |
| NmuCI | GTSAC | 4 cut(s) | 563, 935, 1104, 1330 |
| NsiI | ATGCAT | 1 cut(s) | 101 |
| NspI | RCATGY | 1 cut(s) | 836 |
| PctI | GAATGC | 4 cut(s) | 101, 473, 1352, 1497 |
| PfeI | GAWTC | 4 cut(s) | 391, 684, 1202, 1249 |
| PkrI | GCNGC | 5 cut(s) | 241, 492, 925, 1348, 1351 |
| PsiI | TTATAA | 2 cut(s) | 783, 951 |
| Psp1406I | AACGTT | 1 cut(s) | 397 |
| Psp6I | CCWGG | 1 cut(s) | 1363 |
| PspGI | CCWGG | 1 cut(s) | 1363 |
| PspN4I | GGNNCC | 1 cut(s) | 725 |
| PspPI | GGNCC | 3 cut(s) | 157, 584, 724 |
| PstI | CTGCAG | 1 cut(s) | 1351 |
| PstNI | CAGNNNCTG | 2 cut(s) | 910, 1364 |
| PsuI | RGATCY | 2 cut(s) | 373, 1396 |
| RsaI | GTAC | 4 cut(s) | 283, 335, 879, 1309 |
| RsaNI | GTAC | 4 cut(s) | 282, 334, 878, 1308 |
| RseI | CAYNNNNRTG | 5 cut(s) | 570, 942, 1023, 1337, 1549 |
| SaqAI | TTAA | 2 cut(s) | 105, 1412 |
| SatI | GCNGC | 5 cut(s) | 240, 491, 924, 1347, 1350 |
| Sau3AI | GATC | 5 cut(s) | 373, 513, 577, 1114, 1396 |
| Sau96I | GGNCC | 3 cut(s) | 157, 584, 724 |
| ScrFI | CCNGG | 1 cut(s) | 1365 |
| SduI | GDGCHC | 1 cut(s) | 1324 |
| SfaNI | GCATC | 4 cut(s) | 226, 625, 979, 1438 |
| SfcI | CTRYAG | 2 cut(s) | 420, 1347 |
| SinI | GGWCC | 1 cut(s) | 724 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 570, 942, 1023, 1337, 1549 |
| SsiI | CCGC | 6 cut(s) | 240, 483, 491, 529, 721, 924 |
| SspI | AATATT | 1 cut(s) | 955 |
| SspMI | CTAG | 2 cut(s) | 146, 656 |
| StyD4I | CCNGG | 1 cut(s) | 1363 |
| StyI | CCWWGG | 3 cut(s) | 160, 414, 1191 |
| TaaI | ACNGT | 7 cut(s) | 260, 467, 563, 732, 810, 1084, 1312 |
| TaiI | ACGT | 2 cut(s) | 400, 1513 |
| TaqI | TCGA | 2 cut(s) | 211, 234 |
| TatI | WGTACW | 4 cut(s) | 281, 333, 877, 1307 |
| TauI | GCSGC | 3 cut(s) | 242, 493, 926 |
| TfiI | GAWTC | 4 cut(s) | 391, 684, 1202, 1249 |
| Tru1I | TTAA | 2 cut(s) | 105, 1412 |
| Tru9I | TTAA | 2 cut(s) | 105, 1412 |
| TscAI | CASTG | 2 cut(s) | 762, 813 |
| TseFI | GTSAC | 4 cut(s) | 563, 935, 1104, 1330 |
| TseI | GCWGC | 2 cut(s) | 1346, 1349 |
| Tsp45I | GTSAC | 4 cut(s) | 563, 935, 1104, 1330 |
| TspDTI | ATGAA | 7 cut(s) | 41, 260, 788, 1007, 1041, 1301, 1401 |
| TspRI | CASTG | 2 cut(s) | 762, 813 |
| VpaK11BI | GGWCC | 1 cut(s) | 724 |
| XapI | RAATTY | 3 cut(s) | 318, 508, 850 |
| XceI | RCATGY | 1 cut(s) | 836 |
| XspI | CTAG | 2 cut(s) | 146, 656 |
| Zsp2I | ATGCAT | 1 cut(s) | 101 |