Rorug07G0318300

spectrin binding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
32476378 .. 32479038
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0318300.1

Sequence Viewer

Length: 1944 bp
ATGTCGCTGTACCGCCTGCTCCTCCGCTCTCTCCGCCGCCCAACCACCACCCCACAACCCATAACCCAATCCCAATCCCTAACCTCCCTAACCTCCCTCACCCTCCAAAACCCCATCTCCAATCCTCAATCTCTCACCACCACCCGCTCCTTCGCCTATTCCACCGCCGAAGAAGCCGCCGCCGAGCGCCGCCGCCGCAAGCGCCGCCTCCGCATAGAGCCCCCGCTCGACGCGCTCCGTCGCGGCTCCGGCCCGCCGCCTCCGCGCGACCCCAACGCGCCCCGCCTCCCCGACTCGACCTCCGCCCTCGTCGGCCCTCGCCTCAACCTCCACAACCGCGTCCAGTCCCTCATACGCGCCGGCGACCTCGACGCCGCCTCAGCTGTGGCGCGTCACTCCGTCTTCTCCAACACGCGCCCCACCGTCTTCACCTGCAACGCCATCATCGCCGCCATGTACCGCGGCAAGAGGTACAATGACGCTATTGCCCTCTTCCACTTCTTTTTCAACCAGTCCAACATTGTTCCCAACATTGTATCTTATAATAATTTGATTAACACTCACTGTGATGAGGGCCGTGTCGATGTGGGTCTTGAGATTTACCGGCATATCATTGCAACTGCCCCTTTTAGTCCCTCGCCGGTGACGTACCGGCATTTGACTAAAGGGTTGATTGATGCCGGTAGGATAGGTGACGCTGTGGACTTGTTGAGGGAGATGTTGAATAAGGGGCATGGTGCTGATTCTTTGGTTTTCAATAACTTGATTAAAGGGTTCTTGGATTTGGAGAATTTGGACAAGGCCAATGAGCTTTTCGACGAGCTTAATGAGAGGTGTTTGGTGTATGATGGGGTTGTCAATGCCACCTTTATAGATTGGTTCTTCAATAAGGGGAAAGAGAAGGAGGCCATGGATTCATACAGGTACTTGCTTGATAGGCAGTTTAGGATGATCCCAGCTACCTGCAATGTTCTCTTGGAAGTGTTGCTTAAGCATGGCAAGAAGAAGGAGGCATGGGCTTTGTTTGAACAAATGCTGGATAATCACACACCGCCCAATTTCCAGGCAGTTAATTCCGAGACTTTTAATATAATGGTCAATGAGTGTTTTAAGCTTGGGAAGTTTGGTGAGGCGTTTGACACCTTCAAGAAGGTGGGAACAAATGTGAAGTCAAAGCCTTTTTCCATGGACGTTGCGGGGTATAATAATATCATTGCTAGGTATTGTGAGAATGGGATGTTATCGGAGGCTGATCAACTATTTACAGAATTGTCGTCAAAGTCGCTGACCCCAGACGTAACAACACATAAGACTCTGATTGATGCATATTTGAATGTAGAGAGGATAGATGATGCTCTTAAGATATTTAACAGAATGGTGGATGTTGGGTTGCGAGTGGTTGCTAGTTTTGGTAACAGGGTGTTTACTGAGTTGATTAAGAATGGGAAAGCACTGGACTGTGCAAAATTTTTGAAGAAAATGGGAGAGAAAGATCCTAAACCAGATGCCAGTTGCTATGATGTTGTGATCAGGGGGCTTTGCAATGAAGGTGAACTTGACCCAAGCCTTGATTTACTGACAGAAATGGTGAGATATGGCATTGGTGTTCCTCCTGCACTGAAGCAATTCGTATACGAGGCTTTTGAAAAAGCTGGGCGTGGCGGACAGATTGAGAGAACATTAACTGAGACTAGGTACACACCACCTCCTAGAATGGCACCACCACGTCAGTTCCCGCCCATAAGATCACCTCAAATGGCAGGACCACAGGAATCACCATCAGGAACCTCTCAGATGGCAGGACTGGATCACCTATCATCAGCTGCCTCTCAAATGGCTGGACCATATCAGCCATCATCTGGACCTGCTCAAGGGTCTGGATCACACCAATCCCCATCACAATCAGGGACCTCTCAAACGATGGAACATGTAACAGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

647

Amino Acids

71.92

Weight (kDa)

8.77

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 321 - 354 2.6e-06 PPR repeat family
PPR_2 PF13041 397 - 444 3.9e-11 PPR repeat family
TPR_24 PF23276 417 - 526 9.2e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AarI CACCTGC 1 cut(s) 440
Acc36I ACCTGC 3 cut(s) 440, 971, 1873
AccB1I GGYRCC 1 cut(s) 1717
AccB7I CCANNNNNTGG 1 cut(s) 1859
AccBSI CCGCTC 3 cut(s) 27, 147, 226
AccI GTMKAC 1 cut(s) 1632
AclWI GGATC 4 cut(s) 946, 1487, 1815, 1888
AcsI RAATTY 2 cut(s) 790, 1466
AcuI CTGAAG 1 cut(s) 1640
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 6 cut(s) 11, 458, 473, 650, 926, 1697
AfiI CCNNNNNNNGG 2 cut(s) 1859, 1871
AflII CTTAAG 2 cut(s) 989, 1358
AflIII ACRYGT 1 cut(s) 1927
AgsI TTSAA 9 cut(s) 508, 724, 757, 886, 1028, 1147, 1333, 1474, 1646
AjiI CACGTC 1 cut(s) 1727
AjnI CCWGG 1 cut(s) 1062
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
AluBI AGCT 7 cut(s) 383, 811, 823, 959, 1114, 1652, 1823
AluI AGCT 7 cut(s) 383, 811, 823, 959, 1114, 1652, 1823
Alw26I GTCTC 2 cut(s) 1073, 1682
AlwI GGATC 4 cut(s) 946, 1487, 1815, 1888
AoxI GGCC 5 cut(s) 250, 313, 574, 801, 906
ApeKI GCWGC 1 cut(s) 1823
ApoI RAATTY 2 cut(s) 790, 1466
ArsI GACNNNNNNTTYG 2 cut(s) 1154, 1186
Asp700I GAANNNNTTC 1 cut(s) 1625
AspLEI GCGC 8 cut(s) 189, 204, 235, 267, 280, 359, 391, 417
AspS9I GGNCC 7 cut(s) 251, 314, 574, 1763, 1841, 1862, 1908
AvaII GGWCC 4 cut(s) 1763, 1841, 1862, 1908
BanI GGYRCC 1 cut(s) 1717
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 2 cut(s) 394, 418
BbvCI CCTCAGC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 1810
BccI CCATC 8 cut(s) 122, 449, 842, 1786, 1789, 1861, 1903, 1915
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 1 cut(s) 1064
BclI TGATCA 2 cut(s) 1252, 1527
BcoDI GTCTC 2 cut(s) 1073, 1682
BfaI CTAG 4 cut(s) 1218, 1404, 1692, 1710
BfoI RGCGCY 2 cut(s) 190, 205
BfrI CTTAAG 2 cut(s) 989, 1358
BfuAI ACCTGC 3 cut(s) 440, 971, 1873
Bme1390I CCNGG 1 cut(s) 1064
Bme18I GGWCC 4 cut(s) 1763, 1841, 1862, 1908
BmgBI CACGTC 1 cut(s) 1727
BmgT120I GGNCC 7 cut(s) 251, 314, 574, 1763, 1841, 1862, 1908
BmiI GGNNCC 4 cut(s) 247, 1719, 1786, 1909
BmrFI CCNGG 1 cut(s) 1064
BmsI GCATC 4 cut(s) 667, 1312, 1342, 1495
BpiI GAAGAC 2 cut(s) 394, 418
Bpu10I CCTNAGC 1 cut(s) 379
BpuEI CTTGAG 2 cut(s) 614, 1854
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 3 cut(s) 460, 909, 1185
BsaXI ACNNNNNCTCC 6 cut(s) 101, 131, 284, 314, 1690, 1720
Bsc4I CCNNNNNNNGG 2 cut(s) 1859, 1871
Bse118I RCCGGY 5 cut(s) 359, 603, 640, 651, 680
Bse1I ACTGG 5 cut(s) 343, 511, 1458, 1509, 1809
Bse3DI GCAATG 4 cut(s) 612, 973, 1212, 1549
BseBI CCWGG 1 cut(s) 1064
BseDI CCNNGG 3 cut(s) 460, 909, 1185
BseGI GGATG 3 cut(s) 954, 1242, 1387
BseLI CCNNNNNNNGG 2 cut(s) 1859, 1871
BseMI GCAATG 4 cut(s) 612, 973, 1212, 1549
BseMII CTCAG 4 cut(s) 393, 1419, 1677, 1805
BseNI ACTGG 5 cut(s) 343, 511, 1458, 1509, 1809
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 1810
BseYI CCCAGC 2 cut(s) 955, 1652
BsgI GTGCAG 1 cut(s) 1599
BshFI GGCC 5 cut(s) 252, 315, 576, 803, 908
BshNI GGYRCC 1 cut(s) 1717
BsiSI CCGG 6 cut(s) 249, 360, 604, 641, 652, 681
BslFI GGGAC 3 cut(s) 331, 618, 1921
BslI CCNNNNNNNGG 2 cut(s) 1859, 1871
BsmAI GTCTC 2 cut(s) 1073, 1682
BsmFI GGGAC 3 cut(s) 331, 618, 1921
BsnI GGCC 5 cut(s) 252, 315, 576, 803, 908
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
Bsp19I CCATGG 2 cut(s) 909, 1185
BspANI GGCC 5 cut(s) 252, 315, 576, 803, 908
BspCNI CTCAG 4 cut(s) 392, 1420, 1678, 1804
BspLI GGNNCC 4 cut(s) 247, 1719, 1786, 1909
BspMI ACCTGC 3 cut(s) 440, 971, 1873
BspPI GGATC 4 cut(s) 946, 1487, 1815, 1888
BspT107I GGYRCC 1 cut(s) 1717
BspTI CTTAAG 2 cut(s) 989, 1358
BsrBI CCGCTC 3 cut(s) 27, 147, 226
BsrDI GCAATG 4 cut(s) 612, 973, 1212, 1549
BsrFI RCCGGY 5 cut(s) 359, 603, 640, 651, 680
BsrI ACTGG 5 cut(s) 343, 511, 1458, 1509, 1809
BssAI RCCGGY 5 cut(s) 359, 603, 640, 651, 680
BssECI CCNNGG 3 cut(s) 460, 909, 1185
BssMI GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
BssNAI GTATAC 1 cut(s) 1633
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 2 cut(s) 909, 1185
Bst1107I GTATAC 1 cut(s) 1633
Bst2UI CCWGG 1 cut(s) 1064
Bst4CI ACNGT 4 cut(s) 424, 566, 1460, 1936
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 1 cut(s) 372
BstAFI CTTAAG 2 cut(s) 989, 1358
BstC8I GCNNGC 4 cut(s) 17, 200, 254, 361
BstDEI CTNAG 4 cut(s) 379, 1428, 1686, 1791
BstDSI CCRYGG 3 cut(s) 460, 909, 1185
BstENI CCTNNNNNAGG 1 cut(s) 1869
BstF5I GGATG 3 cut(s) 954, 1242, 1387
BstH2I RGCGCY 2 cut(s) 190, 205
BstHHI GCGC 8 cut(s) 189, 204, 235, 267, 280, 359, 391, 417
BstKTI GATC 7 cut(s) 954, 1255, 1495, 1530, 1748, 1810, 1883
BstMAI GTCTC 2 cut(s) 1073, 1682
BstMBI GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
BstNI CCWGG 1 cut(s) 1064
BstNSI RCATGY 1 cut(s) 1931
BstSCI CCNGG 1 cut(s) 1062
BstV1I GCAGC 1 cut(s) 1810
BstV2I GAAGAC 2 cut(s) 394, 418
BstX2I RGATCY 1 cut(s) 1492
BstYI RGATCY 1 cut(s) 1492
BstZ17I GTATAC 1 cut(s) 1633
BsuRI GGCC 5 cut(s) 252, 315, 576, 803, 908
BtgI CCRYGG 3 cut(s) 460, 909, 1185
BtgZI GCGATG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 1727
BtsCI GGATG 3 cut(s) 954, 1242, 1387
BtsIMutI CAGTG 3 cut(s) 562, 1451, 1616
BveI ACCTGC 3 cut(s) 440, 971, 1873
Cac8I GCNNGC 4 cut(s) 17, 200, 254, 361
CfoI GCGC 8 cut(s) 189, 204, 235, 267, 280, 359, 391, 417
Cfr10I RCCGGY 5 cut(s) 359, 603, 640, 651, 680
Cfr13I GGNCC 7 cut(s) 251, 314, 574, 1763, 1841, 1862, 1908
Cfr42I CCGCGG 1 cut(s) 463
CseI GACGC 6 cut(s) 239, 328, 380, 380, 488, 704
Csp6I GTAC 6 cut(s) 10, 457, 472, 649, 925, 1696
CviAII CATG 7 cut(s) 454, 734, 910, 995, 1014, 1186, 1928
CviQI GTAC 6 cut(s) 10, 457, 472, 649, 925, 1696
DdeI CTNAG 4 cut(s) 379, 1428, 1686, 1791
DpnI GATC 7 cut(s) 953, 1254, 1494, 1529, 1747, 1809, 1882
DpnII GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
EciI GGCGGA 3 cut(s) 23, 292, 1677
Eco130I CCWWGG 2 cut(s) 909, 1185
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 4 cut(s) 1763, 1841, 1862, 1908
Eco57I CTGAAG 1 cut(s) 1640
EcoNI CCTNNNNNAGG 1 cut(s) 1869
EcoO109I RGGNCCY 1 cut(s) 1908
EcoRII CCWGG 1 cut(s) 1062
EcoT14I CCWWGG 2 cut(s) 909, 1185
EcoT22I ATGCAT 1 cut(s) 1327
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 909, 1185
FaeI CATG 7 cut(s) 457, 737, 913, 998, 1017, 1189, 1931
FalI AAGNNNNNCTT 4 cut(s) 972, 1004, 1539, 1571
FaqI GGGAC 3 cut(s) 331, 618, 1921
FatI CATG 7 cut(s) 453, 733, 909, 994, 1013, 1185, 1927
FauI CCCGC 6 cut(s) 152, 231, 261, 290, 1189, 1743
FbaI TGATCA 2 cut(s) 1252, 1527
FblI GTMKAC 1 cut(s) 1632
FokI GGATG 3 cut(s) 961, 1249, 1394
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 4 cut(s) 1218, 1404, 1692, 1710
GlaI GCGC 8 cut(s) 188, 203, 234, 266, 279, 358, 390, 416
GsaI CCCAGC 2 cut(s) 959, 1656
HaeII RGCGCY 2 cut(s) 190, 205
HaeIII GGCC 5 cut(s) 252, 315, 576, 803, 908
HapII CCGG 6 cut(s) 249, 360, 604, 641, 652, 681
HgaI GACGC 6 cut(s) 239, 328, 380, 380, 488, 704
HhaI GCGC 8 cut(s) 189, 204, 235, 267, 280, 359, 391, 417
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 7 cut(s) 457, 737, 913, 998, 1017, 1189, 1931
Hin6I GCGC 8 cut(s) 187, 202, 233, 265, 278, 357, 389, 415
HinP1I GCGC 8 cut(s) 187, 202, 233, 265, 278, 357, 389, 415
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 5 cut(s) 293, 743, 914, 1312, 1772
HpaII CCGG 6 cut(s) 249, 360, 604, 641, 652, 681
Hpy166II GTNNAC 5 cut(s) 703, 1425, 1553, 1633, 1698
Hpy188I TCNGA 4 cut(s) 1078, 1246, 1317, 1794
Hpy188III TCNNGA 5 cut(s) 593, 1147, 1782, 1860, 1878
Hpy8I GTNNAC 5 cut(s) 703, 1425, 1553, 1633, 1698
Hpy99I CGWCG 5 cut(s) 233, 243, 314, 374, 821
HpyAV CCTTC 6 cut(s) 160, 895, 1000, 1144, 1153, 1541
HpyCH4III ACNGT 4 cut(s) 424, 566, 1460, 1936
HpyCH4IV ACGT 4 cut(s) 647, 1191, 1296, 1726
HpyCH4V TGCA 7 cut(s) 435, 617, 966, 1325, 1463, 1542, 1616
HpyF3I CTNAG 4 cut(s) 379, 1428, 1686, 1791
HpySE526I ACGT 4 cut(s) 647, 1191, 1296, 1726
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 7 cut(s) 457, 737, 913, 998, 1017, 1189, 1931
HspAI GCGC 8 cut(s) 187, 202, 233, 265, 278, 357, 389, 415
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
Ksp22I TGATCA 2 cut(s) 1252, 1527
KspI CCGCGG 1 cut(s) 463
Kzo9I GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
LmnI GCTCC 4 cut(s) 24, 152, 240, 251
Lsp1109I GCAGC 1 cut(s) 1810
LweI GCATC 4 cut(s) 667, 1312, 1342, 1495
MaeI CTAG 4 cut(s) 1218, 1404, 1692, 1710
MaeII ACGT 4 cut(s) 647, 1191, 1296, 1726
MaeIII GTNAC 6 cut(s) 392, 643, 692, 1297, 1412, 1930
MalI GATC 7 cut(s) 953, 1254, 1494, 1529, 1747, 1809, 1882
MbiI CCGCTC 3 cut(s) 27, 147, 226
MboI GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
MboII GAAGA 7 cut(s) 182, 394, 418, 484, 874, 1015, 1486
MflI RGATCY 1 cut(s) 1492
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 7 cut(s) 547, 790, 1057, 1072, 1268, 1466, 1625
MlyI GAGTC 2 cut(s) 287, 1306
MmeI TCCRAC 2 cut(s) 432, 540
Mph1103I ATGCAT 1 cut(s) 1327
MreI CGCCGGCG 1 cut(s) 359
MroNI GCCGGC 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 1625
MslI CAYNNNNRTG 1 cut(s) 567
MspA1I CMGCKG 3 cut(s) 383, 462, 1823
MspCI CTTAAG 2 cut(s) 989, 1358
MspI CCGG 6 cut(s) 249, 360, 604, 641, 652, 681
MspR9I CCNGG 1 cut(s) 1064
MvaI CCWGG 1 cut(s) 1064
NaeI GCCGGC 1 cut(s) 361
NcoI CCATGG 2 cut(s) 909, 1185
NdeII GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 7 cut(s) 457, 737, 913, 998, 1017, 1189, 1931
NlaIV GGNNCC 4 cut(s) 247, 1719, 1786, 1909
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 3 cut(s) 392, 643, 692
NsiI ATGCAT 1 cut(s) 1327
NspI RCATGY 1 cut(s) 1931
PaqCI CACCTGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 1927
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PdiI GCCGGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 1625
PfeI GAWTC 3 cut(s) 743, 914, 1772
PflMI CCANNNNNTGG 1 cut(s) 1859
PleI GAGTC 2 cut(s) 287, 1306
PpsI GAGTC 2 cut(s) 287, 1306
PpuMI RGGWCCY 1 cut(s) 1908
PscI ACATGT 1 cut(s) 1927
PsiI TTATAA 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 1908
Psp6I CCWGG 1 cut(s) 1062
PspFI CCCAGC 2 cut(s) 955, 1652
PspGI CCWGG 1 cut(s) 1062
PspN4I GGNNCC 4 cut(s) 247, 1719, 1786, 1909
PspPI GGNCC 7 cut(s) 251, 314, 574, 1763, 1841, 1862, 1908
PspPPI RGGWCCY 1 cut(s) 1908
PsuI RGATCY 1 cut(s) 1492
PvuII CAGCTG 2 cut(s) 383, 1823
RsaI GTAC 6 cut(s) 11, 458, 473, 650, 926, 1697
RsaNI GTAC 6 cut(s) 10, 457, 472, 649, 925, 1696
RseI CAYNNNNRTG 1 cut(s) 567
SacII CCGCGG 1 cut(s) 463
Sau3AI GATC 7 cut(s) 951, 1252, 1492, 1527, 1745, 1807, 1880
Sau96I GGNCC 7 cut(s) 251, 314, 574, 1763, 1841, 1862, 1908
SchI GAGTC 2 cut(s) 287, 1306
ScrFI CCNGG 1 cut(s) 1064
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 4 cut(s) 667, 1312, 1342, 1495
Sfr303I CCGCGG 1 cut(s) 463
SgrAI CRCCGGYG 2 cut(s) 359, 640
SgrBI CCGCGG 1 cut(s) 463
SinI GGWCC 4 cut(s) 1763, 1841, 1862, 1908
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 4 cut(s) 593, 989, 1358, 1869
SmoI CTYRAG 4 cut(s) 593, 989, 1358, 1869
Sse9I AATT 7 cut(s) 547, 790, 1057, 1072, 1268, 1466, 1625
SspMI CTAG 4 cut(s) 1218, 1404, 1692, 1710
StyD4I CCNGG 1 cut(s) 1062
StyI CCWWGG 2 cut(s) 909, 1185
TaaI ACNGT 4 cut(s) 424, 566, 1460, 1936
TaiI ACGT 4 cut(s) 650, 1194, 1299, 1729
TaqI TCGA 5 cut(s) 228, 296, 369, 582, 816
TasI AATT 7 cut(s) 547, 790, 1057, 1072, 1268, 1466, 1625
TfiI GAWTC 3 cut(s) 743, 914, 1772
TscAI CASTG 3 cut(s) 569, 1458, 1623
TseFI GTSAC 3 cut(s) 392, 643, 692
TseI GCWGC 1 cut(s) 1823
Tsp45I GTSAC 3 cut(s) 392, 643, 692
TspDTI ATGAA 2 cut(s) 906, 1560
TspGWI ACGGA 2 cut(s) 227, 388
TspRI CASTG 3 cut(s) 569, 1458, 1623
Van91I CCANNNNNTGG 1 cut(s) 1859
Vha464I CTTAAG 2 cut(s) 989, 1358
VpaK11BI GGWCC 4 cut(s) 1763, 1841, 1862, 1908
XagI CCTNNNNNAGG 1 cut(s) 1869
XapI RAATTY 2 cut(s) 790, 1466
XceI RCATGY 1 cut(s) 1931
XmiI GTMKAC 1 cut(s) 1632
XmnI GAANNNNTTC 1 cut(s) 1625
XspI CTAG 4 cut(s) 1218, 1404, 1692, 1710
Zsp2I ATGCAT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.