protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 132 |
| AccI | GTMKAC | 1 cut(s) | 293 |
| AccII | CGCG | 1 cut(s) | 324 |
| AciI | CCGC | 2 cut(s) | 114, 149 |
| AclWI | GGATC | 5 cut(s) | 81, 151, 164, 298, 343 |
| AfeI | AGCGCT | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 70, 120, 266 |
| AluBI | AGCT | 2 cut(s) | 173, 232 |
| AluI | AGCT | 2 cut(s) | 173, 232 |
| AlwI | GGATC | 5 cut(s) | 81, 151, 164, 298, 343 |
| Aor51HI | AGCGCT | 1 cut(s) | 218 |
| AoxI | GGCC | 4 cut(s) | 61, 111, 257, 369 |
| ApeKI | GCWGC | 1 cut(s) | 214 |
| AspLEI | GCGC | 2 cut(s) | 219, 324 |
| AspS9I | GGNCC | 2 cut(s) | 111, 369 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 2 cut(s) | 47, 239 |
| BaeGI | GKGCMC | 1 cut(s) | 202 |
| BamHI | GGATCC | 1 cut(s) | 156 |
| BbvI | GCAGC | 1 cut(s) | 226 |
| BccI | CCATC | 1 cut(s) | 73 |
| BceAI | ACGGC | 1 cut(s) | 397 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BfaI | CTAG | 1 cut(s) | 32 |
| BfoI | RGCGCY | 1 cut(s) | 220 |
| BfuAI | ACCTGC | 1 cut(s) | 132 |
| BglII | AGATCT | 1 cut(s) | 22 |
| BisI | GCNGC | 3 cut(s) | 114, 150, 215 |
| BlsI | GCNGC | 3 cut(s) | 115, 151, 216 |
| Bme1390I | CCNGG | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 2 cut(s) | 111, 369 |
| BmiI | GGNNCC | 2 cut(s) | 112, 158 |
| BmrFI | CCNGG | 1 cut(s) | 118 |
| BmrI | ACTGGG | 1 cut(s) | 64 |
| BmuI | ACTGGG | 1 cut(s) | 64 |
| BpmI | CTGGAG | 1 cut(s) | 269 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 70, 120, 266 |
| Bse1I | ACTGG | 3 cut(s) | 59, 207, 252 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 70, 120, 266 |
| BseMII | CTCAG | 1 cut(s) | 63 |
| BseNI | ACTGG | 3 cut(s) | 59, 207, 252 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BseSI | GKGCMC | 1 cut(s) | 202 |
| BseXI | GCAGC | 1 cut(s) | 226 |
| BseYI | CCCAGC | 2 cut(s) | 152, 173 |
| BsgI | GTGCAG | 1 cut(s) | 374 |
| Bsh1236I | CGCG | 1 cut(s) | 324 |
| BshFI | GGCC | 4 cut(s) | 63, 113, 259, 371 |
| BsiSI | CCGG | 1 cut(s) | 117 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 70, 120, 266 |
| BsnI | GGCC | 4 cut(s) | 63, 113, 259, 371 |
| Bsp1286I | GDGCHC | 1 cut(s) | 202 |
| Bsp143I | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| BspACI | CCGC | 2 cut(s) | 114, 149 |
| BspANI | GGCC | 4 cut(s) | 63, 113, 259, 371 |
| BspCNI | CTCAG | 1 cut(s) | 62 |
| BspFNI | CGCG | 1 cut(s) | 324 |
| BspLI | GGNNCC | 2 cut(s) | 112, 158 |
| BspMI | ACCTGC | 1 cut(s) | 132 |
| BspPI | GGATC | 5 cut(s) | 81, 151, 164, 298, 343 |
| BsrI | ACTGG | 3 cut(s) | 59, 207, 252 |
| BssMI | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| Bst4CI | ACNGT | 4 cut(s) | 194, 238, 269, 298 |
| BstC8I | GCNNGC | 1 cut(s) | 261 |
| BstDEI | CTNAG | 1 cut(s) | 49 |
| BstFNI | CGCG | 1 cut(s) | 324 |
| BstH2I | RGCGCY | 1 cut(s) | 220 |
| BstHHI | GCGC | 2 cut(s) | 219, 324 |
| BstKTI | GATC | 6 cut(s) | 25, 40, 76, 159, 306, 338 |
| BstMBI | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 328 |
| BstSCI | CCNGG | 1 cut(s) | 116 |
| BstSLI | GKGCMC | 1 cut(s) | 202 |
| BstUI | CGCG | 1 cut(s) | 324 |
| BstV1I | GCAGC | 1 cut(s) | 226 |
| BstX2I | RGATCY | 3 cut(s) | 22, 156, 335 |
| BstYI | RGATCY | 3 cut(s) | 22, 156, 335 |
| BsuRI | GGCC | 4 cut(s) | 63, 113, 259, 371 |
| BtsIMutI | CAGTG | 1 cut(s) | 200 |
| BveI | ACCTGC | 1 cut(s) | 132 |
| Cac8I | GCNNGC | 1 cut(s) | 261 |
| CfoI | GCGC | 2 cut(s) | 219, 324 |
| Cfr13I | GGNCC | 2 cut(s) | 111, 369 |
| CseI | GACGC | 1 cut(s) | 279 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 299, 334 |
| DdeI | CTNAG | 1 cut(s) | 49 |
| DpnI | GATC | 6 cut(s) | 24, 39, 75, 158, 305, 337 |
| DpnII | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| Eco47III | AGCGCT | 1 cut(s) | 218 |
| FblI | GTMKAC | 1 cut(s) | 293 |
| Fnu4HI | GCNGC | 3 cut(s) | 114, 150, 215 |
| Fsp4HI | GCNGC | 3 cut(s) | 114, 150, 215 |
| FspBI | CTAG | 1 cut(s) | 32 |
| GlaI | GCGC | 2 cut(s) | 218, 323 |
| GluI | GCNGC | 3 cut(s) | 114, 150, 215 |
| GsaI | CCCAGC | 2 cut(s) | 156, 177 |
| GsuI | CTGGAG | 1 cut(s) | 269 |
| HaeII | RGCGCY | 1 cut(s) | 220 |
| HaeIII | GGCC | 4 cut(s) | 63, 113, 259, 371 |
| HapII | CCGG | 1 cut(s) | 117 |
| HgaI | GACGC | 1 cut(s) | 279 |
| HhaI | GCGC | 2 cut(s) | 219, 324 |
| Hin6I | GCGC | 2 cut(s) | 217, 322 |
| HinP1I | GCGC | 2 cut(s) | 217, 322 |
| HincII | GTYRAC | 1 cut(s) | 294 |
| HindII | GTYRAC | 1 cut(s) | 294 |
| HinfI | GANTC | 1 cut(s) | 389 |
| HpaII | CCGG | 1 cut(s) | 117 |
| HphI | GGTGA | 2 cut(s) | 47, 239 |
| Hpy166II | GTNNAC | 1 cut(s) | 294 |
| Hpy188I | TCNGA | 4 cut(s) | 17, 52, 78, 161 |
| Hpy8I | GTNNAC | 1 cut(s) | 294 |
| Hpy99I | CGWCG | 3 cut(s) | 17, 295, 298 |
| HpyCH4III | ACNGT | 4 cut(s) | 194, 238, 269, 298 |
| HpyCH4V | TGCA | 2 cut(s) | 141, 355 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 328 |
| HpyF3I | CTNAG | 1 cut(s) | 49 |
| HspAI | GCGC | 2 cut(s) | 217, 322 |
| Kzo9I | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| LmnI | GCTCC | 3 cut(s) | 170, 211, 241 |
| Lsp1109I | GCAGC | 1 cut(s) | 226 |
| MaeI | CTAG | 1 cut(s) | 32 |
| MaeIII | GTNAC | 1 cut(s) | 386 |
| MalI | GATC | 6 cut(s) | 24, 39, 75, 158, 305, 337 |
| MboI | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| MflI | RGATCY | 3 cut(s) | 22, 156, 335 |
| MhlI | GDGCHC | 1 cut(s) | 202 |
| MlyI | GAGTC | 1 cut(s) | 383 |
| MmeI | TCCRAC | 1 cut(s) | 148 |
| MnlI | CCTC | 3 cut(s) | 94, 114, 244 |
| MspI | CCGG | 1 cut(s) | 117 |
| MspR9I | CCNGG | 1 cut(s) | 118 |
| MvnI | CGCG | 1 cut(s) | 324 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 328 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NdeII | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| NlaIV | GGNNCC | 2 cut(s) | 112, 158 |
| NmuCI | GTSAC | 1 cut(s) | 386 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 299 |
| PkrI | GCNGC | 3 cut(s) | 115, 151, 216 |
| PleI | GAGTC | 1 cut(s) | 383 |
| PpsI | GAGTC | 1 cut(s) | 383 |
| PspFI | CCCAGC | 2 cut(s) | 152, 173 |
| PspN4I | GGNNCC | 2 cut(s) | 112, 158 |
| PspPI | GGNCC | 2 cut(s) | 111, 369 |
| PsuI | RGATCY | 3 cut(s) | 22, 156, 335 |
| SalI | GTCGAC | 1 cut(s) | 292 |
| SatI | GCNGC | 3 cut(s) | 114, 150, 215 |
| Sau3AI | GATC | 6 cut(s) | 22, 37, 73, 156, 303, 335 |
| Sau96I | GGNCC | 2 cut(s) | 111, 369 |
| SchI | GAGTC | 1 cut(s) | 383 |
| ScrFI | CCNGG | 1 cut(s) | 118 |
| SduI | GDGCHC | 1 cut(s) | 202 |
| SetI | ASST | 6 cut(s) | 37, 125, 146, 175, 234, 286 |
| SgrDI | CGTCGACG | 1 cut(s) | 292 |
| SsiI | CCGC | 2 cut(s) | 114, 149 |
| SspMI | CTAG | 1 cut(s) | 32 |
| StyD4I | CCNGG | 1 cut(s) | 116 |
| TaaI | ACNGT | 4 cut(s) | 194, 238, 269, 298 |
| TaqI | TCGA | 1 cut(s) | 293 |
| TauI | GCSGC | 2 cut(s) | 116, 152 |
| TscAI | CASTG | 1 cut(s) | 207 |
| TseFI | GTSAC | 1 cut(s) | 386 |
| TseI | GCWGC | 1 cut(s) | 214 |
| Tsp45I | GTSAC | 1 cut(s) | 386 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 296 |
| TspRI | CASTG | 1 cut(s) | 207 |
| XmiI | GTMKAC | 1 cut(s) | 293 |
| XspI | CTAG | 1 cut(s) | 32 |