Domain of unknown function
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 21 - 43 | 2e-07 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 30 - 97 | 7.8e-07 | gag-polypeptide of LTR copia-type |
| Retrotran_gag_2 | PF14223 | 136 - 210 | 5.5e-07 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 258 - 340 | 2.6e-07 | Ankyrin repeats (3 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 79 |
| AccIII | TCCGGA | 1 cut(s) | 166 |
| AciI | CCGC | 5 cut(s) | 508, 593, 775, 947, 1010 |
| AclWI | GGATC | 2 cut(s) | 158, 698 |
| AcoI | YGGCCR | 2 cut(s) | 258, 958 |
| AcsI | RAATTY | 1 cut(s) | 427 |
| AcuI | CTGAAG | 1 cut(s) | 687 |
| AfaI | GTAC | 1 cut(s) | 346 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 152 |
| AgsI | TTSAA | 8 cut(s) | 44, 295, 362, 628, 676, 869, 940, 1016 |
| AhlI | ACTAGT | 1 cut(s) | 334 |
| AjnI | CCWGG | 2 cut(s) | 521, 602 |
| AluBI | AGCT | 5 cut(s) | 8, 365, 396, 491, 863 |
| AluI | AGCT | 5 cut(s) | 8, 365, 396, 491, 863 |
| Alw21I | GWGCWC | 1 cut(s) | 390 |
| Alw26I | GTCTC | 2 cut(s) | 83, 269 |
| AlwI | GGATC | 2 cut(s) | 158, 698 |
| Aor13HI | TCCGGA | 1 cut(s) | 166 |
| AoxI | GGCC | 2 cut(s) | 258, 958 |
| ApeKI | GCWGC | 3 cut(s) | 5, 326, 794 |
| ApoI | RAATTY | 1 cut(s) | 427 |
| AseI | ATTAAT | 1 cut(s) | 810 |
| AsuC2I | CCSGG | 1 cut(s) | 553 |
| AsuHPI | GGTGA | 4 cut(s) | 167, 532, 713, 898 |
| BalI | TGGCCA | 1 cut(s) | 260 |
| BauI | CACGAG | 1 cut(s) | 451 |
| BbsI | GAAGAC | 4 cut(s) | 75, 223, 480, 675 |
| Bbv12I | GWGCWC | 1 cut(s) | 390 |
| BbvCI | CCTCAGC | 1 cut(s) | 105 |
| BbvI | GCAGC | 3 cut(s) | 17, 338, 806 |
| BccI | CCATC | 4 cut(s) | 212, 250, 583, 692 |
| BceAI | ACGGC | 2 cut(s) | 150, 901 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 545, 579 |
| BciT130I | CCWGG | 2 cut(s) | 523, 604 |
| BciVI | GTATCC | 1 cut(s) | 991 |
| BcnI | CCSGG | 1 cut(s) | 553 |
| BcoDI | GTCTC | 2 cut(s) | 83, 269 |
| BcuI | ACTAGT | 1 cut(s) | 334 |
| BfaI | CTAG | 3 cut(s) | 335, 342, 470 |
| BfmI | CTRYAG | 1 cut(s) | 9 |
| BfuI | GTATCC | 1 cut(s) | 991 |
| BisI | GCNGC | 3 cut(s) | 6, 327, 795 |
| BlsI | GCNGC | 3 cut(s) | 7, 328, 796 |
| Bme1390I | CCNGG | 3 cut(s) | 523, 553, 604 |
| BmrFI | CCNGG | 3 cut(s) | 523, 553, 604 |
| BmsI | GCATC | 6 cut(s) | 256, 550, 589, 814, 826, 997 |
| BoxI | GACNNNNGTC | 2 cut(s) | 75, 227 |
| BpiI | GAAGAC | 4 cut(s) | 75, 223, 480, 675 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 3 cut(s) | 94, 412, 636 |
| Bpu10I | CCTNAGC | 1 cut(s) | 105 |
| BpuMI | CCSGG | 1 cut(s) | 553 |
| BsaBI | GATNNNNATC | 1 cut(s) | 702 |
| BsaI | GGTCTC | 1 cut(s) | 83 |
| BsaJI | CCNNGG | 5 cut(s) | 132, 189, 261, 445, 522 |
| BsaWI | WCCGGW | 1 cut(s) | 166 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 152 |
| Bse1I | ACTGG | 3 cut(s) | 21, 77, 395 |
| Bse3DI | GCAATG | 1 cut(s) | 527 |
| Bse8I | GATNNNNATC | 1 cut(s) | 702 |
| BseAI | TCCGGA | 1 cut(s) | 166 |
| BseBI | CCWGG | 2 cut(s) | 523, 604 |
| BseDI | CCNNGG | 5 cut(s) | 132, 189, 261, 445, 522 |
| BseGI | GGATG | 6 cut(s) | 204, 261, 271, 565, 817, 1012 |
| BseJI | GATNNNNATC | 1 cut(s) | 702 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 152 |
| BseMI | GCAATG | 1 cut(s) | 527 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseNI | ACTGG | 3 cut(s) | 21, 77, 395 |
| BseRI | GAGGAG | 1 cut(s) | 624 |
| BseXI | GCAGC | 3 cut(s) | 17, 338, 806 |
| BshFI | GGCC | 2 cut(s) | 260, 960 |
| BsiHKAI | GWGCWC | 1 cut(s) | 390 |
| BsiSI | CCGG | 2 cut(s) | 167, 552 |
| BslFI | GGGAC | 3 cut(s) | 131, 323, 449 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 152 |
| BsmAI | GTCTC | 2 cut(s) | 83, 269 |
| BsmFI | GGGAC | 3 cut(s) | 131, 323, 449 |
| BsnI | GGCC | 2 cut(s) | 260, 960 |
| Bso31I | GGTCTC | 1 cut(s) | 83 |
| Bsp1286I | GDGCHC | 1 cut(s) | 390 |
| Bsp13I | TCCGGA | 1 cut(s) | 166 |
| Bsp143I | GATC | 4 cut(s) | 163, 355, 703, 841 |
| BspACI | CCGC | 5 cut(s) | 508, 593, 775, 947, 1010 |
| BspANI | GGCC | 2 cut(s) | 260, 960 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| BspEI | TCCGGA | 1 cut(s) | 166 |
| BspPI | GGATC | 2 cut(s) | 158, 698 |
| BspQI | GCTCTTC | 2 cut(s) | 201, 870 |
| BspTNI | GGTCTC | 1 cut(s) | 83 |
| BsrDI | GCAATG | 1 cut(s) | 527 |
| BsrI | ACTGG | 3 cut(s) | 21, 77, 395 |
| BssECI | CCNNGG | 5 cut(s) | 132, 189, 261, 445, 522 |
| BssMI | GATC | 4 cut(s) | 163, 355, 703, 841 |
| BssSI | CACGAG | 1 cut(s) | 451 |
| BssT1I | CCWWGG | 3 cut(s) | 189, 261, 445 |
| Bst2BI | CACGAG | 1 cut(s) | 451 |
| Bst2UI | CCWGG | 2 cut(s) | 523, 604 |
| Bst4CI | ACNGT | 3 cut(s) | 13, 349, 584 |
| Bst6I | CTCTTC | 3 cut(s) | 201, 651, 870 |
| BstC8I | GCNNGC | 1 cut(s) | 420 |
| BstDEI | CTNAG | 1 cut(s) | 105 |
| BstDSI | CCRYGG | 1 cut(s) | 132 |
| BstF5I | GGATG | 6 cut(s) | 204, 261, 271, 565, 817, 1012 |
| BstKTI | GATC | 4 cut(s) | 166, 358, 706, 844 |
| BstMAI | GTCTC | 2 cut(s) | 83, 269 |
| BstMBI | GATC | 4 cut(s) | 163, 355, 703, 841 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 128, 200, 266, 599, 833 |
| BstNI | CCWGG | 2 cut(s) | 523, 604 |
| BstNSI | RCATGY | 1 cut(s) | 536 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 75, 227 |
| BstSCI | CCNGG | 3 cut(s) | 521, 551, 602 |
| BstSFI | CTRYAG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 3 cut(s) | 17, 338, 806 |
| BstV2I | GAAGAC | 4 cut(s) | 75, 223, 480, 675 |
| BsuI | GTATCC | 1 cut(s) | 991 |
| BsuRI | GGCC | 2 cut(s) | 260, 960 |
| BtgI | CCRYGG | 1 cut(s) | 132 |
| BtsCI | GGATG | 6 cut(s) | 204, 261, 271, 565, 817, 1012 |
| BtsI | GCAGTG | 1 cut(s) | 966 |
| BtsIMutI | CAGTG | 5 cut(s) | 28, 354, 388, 589, 966 |
| Cac8I | GCNNGC | 1 cut(s) | 420 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 1 cut(s) | 345 |
| CviAII | CATG | 5 cut(s) | 200, 322, 499, 533, 1044 |
| CviQI | GTAC | 1 cut(s) | 345 |
| DdeI | CTNAG | 1 cut(s) | 105 |
| DpnI | GATC | 4 cut(s) | 165, 357, 705, 843 |
| DpnII | GATC | 4 cut(s) | 163, 355, 703, 841 |
| DraI | TTTAAA | 1 cut(s) | 645 |
| EaeI | YGGCCR | 2 cut(s) | 258, 958 |
| Eam1104I | CTCTTC | 3 cut(s) | 201, 651, 870 |
| EarI | CTCTTC | 3 cut(s) | 201, 651, 870 |
| EciI | GGCGGA | 2 cut(s) | 523, 608 |
| Eco130I | CCWWGG | 3 cut(s) | 189, 261, 445 |
| Eco31I | GGTCTC | 1 cut(s) | 83 |
| Eco32I | GATATC | 1 cut(s) | 313 |
| Eco57I | CTGAAG | 1 cut(s) | 687 |
| EcoRII | CCWGG | 2 cut(s) | 521, 602 |
| EcoRV | GATATC | 1 cut(s) | 313 |
| EcoT14I | CCWWGG | 3 cut(s) | 189, 261, 445 |
| ErhI | CCWWGG | 3 cut(s) | 189, 261, 445 |
| FaeI | CATG | 5 cut(s) | 203, 325, 502, 536, 1047 |
| FaqI | GGGAC | 3 cut(s) | 131, 323, 449 |
| FatI | CATG | 5 cut(s) | 199, 321, 498, 532, 1043 |
| FblI | GTMKAC | 1 cut(s) | 79 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 327, 795 |
| FokI | GGATG | 6 cut(s) | 191, 268, 278, 572, 804, 1019 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 327, 795 |
| FspBI | CTAG | 3 cut(s) | 335, 342, 470 |
| GluI | GCNGC | 3 cut(s) | 6, 327, 795 |
| GsuI | CTGGAG | 3 cut(s) | 94, 412, 636 |
| HaeIII | GGCC | 2 cut(s) | 260, 960 |
| HapII | CCGG | 2 cut(s) | 167, 552 |
| HgaI | GACGC | 1 cut(s) | 128 |
| Hin1II | CATG | 5 cut(s) | 203, 325, 502, 536, 1047 |
| HinfI | GANTC | 4 cut(s) | 76, 286, 662, 689 |
| HpaII | CCGG | 2 cut(s) | 167, 552 |
| HphI | GGTGA | 4 cut(s) | 167, 532, 713, 898 |
| Hpy166II | GTNNAC | 3 cut(s) | 80, 458, 895 |
| Hpy188I | TCNGA | 3 cut(s) | 51, 667, 997 |
| Hpy188III | TCNNGA | 8 cut(s) | 41, 167, 359, 368, 653, 707, 766, 821 |
| Hpy8I | GTNNAC | 3 cut(s) | 80, 458, 895 |
| HpyAV | CCTTC | 1 cut(s) | 476 |
| HpyCH4III | ACNGT | 3 cut(s) | 13, 349, 584 |
| HpyCH4IV | ACGT | 1 cut(s) | 438 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 532, 827, 1029 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 128, 200, 266, 599, 833 |
| HpyF3I | CTNAG | 1 cut(s) | 105 |
| HpySE526I | ACGT | 1 cut(s) | 438 |
| Hsp92II | CATG | 5 cut(s) | 203, 325, 502, 536, 1047 |
| Kpn2I | TCCGGA | 1 cut(s) | 166 |
| Kzo9I | GATC | 4 cut(s) | 163, 355, 703, 841 |
| LguI | GCTCTTC | 2 cut(s) | 201, 870 |
| LmnI | GCTCC | 1 cut(s) | 393 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 338, 806 |
| LweI | GCATC | 6 cut(s) | 256, 550, 589, 814, 826, 997 |
| MaeI | CTAG | 3 cut(s) | 335, 342, 470 |
| MaeII | ACGT | 1 cut(s) | 438 |
| MaeIII | GTNAC | 4 cut(s) | 16, 245, 578, 909 |
| MalI | GATC | 4 cut(s) | 165, 357, 705, 843 |
| MboI | GATC | 4 cut(s) | 163, 355, 703, 841 |
| MhlI | GDGCHC | 1 cut(s) | 390 |
| MlsI | TGGCCA | 1 cut(s) | 260 |
| MluCI | AATT | 4 cut(s) | 99, 427, 757, 869 |
| MluNI | TGGCCA | 1 cut(s) | 260 |
| MlyI | GAGTC | 2 cut(s) | 85, 683 |
| MmeI | TCCRAC | 1 cut(s) | 1015 |
| MnlI | CCTC | 7 cut(s) | 100, 471, 642, 645, 652, 784, 882 |
| Mox20I | TGGCCA | 1 cut(s) | 260 |
| MroI | TCCGGA | 1 cut(s) | 166 |
| MscI | TGGCCA | 1 cut(s) | 260 |
| MseI | TTAA | 4 cut(s) | 98, 644, 756, 810 |
| MslI | CAYNNNNRTG | 2 cut(s) | 254, 822 |
| Msp20I | TGGCCA | 1 cut(s) | 260 |
| MspI | CCGG | 2 cut(s) | 167, 552 |
| MspR9I | CCNGG | 3 cut(s) | 523, 553, 604 |
| MvaI | CCWGG | 2 cut(s) | 523, 604 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 128, 200, 266, 599, 833 |
| NciI | CCSGG | 1 cut(s) | 553 |
| NdeII | GATC | 4 cut(s) | 163, 355, 703, 841 |
| NlaIII | CATG | 5 cut(s) | 203, 325, 502, 536, 1047 |
| NmuCI | GTSAC | 2 cut(s) | 245, 578 |
| NspI | RCATGY | 1 cut(s) | 536 |
| PciSI | GCTCTTC | 2 cut(s) | 201, 870 |
| PfeI | GAWTC | 2 cut(s) | 286, 662 |
| PflFI | GACNNNGTC | 2 cut(s) | 122, 440 |
| PkrI | GCNGC | 3 cut(s) | 7, 328, 796 |
| PleI | GAGTC | 2 cut(s) | 84, 683 |
| PpsI | GAGTC | 2 cut(s) | 84, 683 |
| PshAI | GACNNNNGTC | 2 cut(s) | 75, 227 |
| PshBI | ATTAAT | 1 cut(s) | 810 |
| Psp6I | CCWGG | 2 cut(s) | 521, 602 |
| PspGI | CCWGG | 2 cut(s) | 521, 602 |
| PsyI | GACNNNGTC | 2 cut(s) | 122, 440 |
| RsaI | GTAC | 1 cut(s) | 346 |
| RsaNI | GTAC | 1 cut(s) | 345 |
| RseI | CAYNNNNRTG | 2 cut(s) | 254, 822 |
| SapI | GCTCTTC | 2 cut(s) | 201, 870 |
| SaqAI | TTAA | 4 cut(s) | 98, 644, 756, 810 |
| SatI | GCNGC | 3 cut(s) | 6, 327, 795 |
| Sau3AI | GATC | 4 cut(s) | 163, 355, 703, 841 |
| SchI | GAGTC | 2 cut(s) | 85, 683 |
| ScrFI | CCNGG | 3 cut(s) | 523, 553, 604 |
| SduI | GDGCHC | 1 cut(s) | 390 |
| SfaNI | GCATC | 6 cut(s) | 256, 550, 589, 814, 826, 997 |
| SfcI | CTRYAG | 1 cut(s) | 9 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 254, 822 |
| SpeI | ACTAGT | 1 cut(s) | 334 |
| Sse9I | AATT | 4 cut(s) | 99, 427, 757, 869 |
| SsiI | CCGC | 5 cut(s) | 508, 593, 775, 947, 1010 |
| SspMI | CTAG | 3 cut(s) | 335, 342, 470 |
| StyD4I | CCNGG | 3 cut(s) | 521, 551, 602 |
| StyI | CCWWGG | 3 cut(s) | 189, 261, 445 |
| TaaI | ACNGT | 3 cut(s) | 13, 349, 584 |
| TaiI | ACGT | 1 cut(s) | 441 |
| TaqI | TCGA | 3 cut(s) | 687, 727, 765 |
| TasI | AATT | 4 cut(s) | 99, 427, 757, 869 |
| TatI | WGTACW | 1 cut(s) | 344 |
| TfiI | GAWTC | 2 cut(s) | 286, 662 |
| Tru1I | TTAA | 4 cut(s) | 98, 644, 756, 810 |
| Tru9I | TTAA | 4 cut(s) | 98, 644, 756, 810 |
| TscAI | CASTG | 5 cut(s) | 28, 354, 395, 589, 973 |
| TseFI | GTSAC | 2 cut(s) | 245, 578 |
| TseI | GCWGC | 3 cut(s) | 5, 326, 794 |
| Tsp45I | GTSAC | 2 cut(s) | 245, 578 |
| TspDTI | ATGAA | 4 cut(s) | 81, 188, 194, 938 |
| TspRI | CASTG | 5 cut(s) | 28, 354, 395, 589, 973 |
| Tth111I | GACNNNGTC | 2 cut(s) | 122, 440 |
| VspI | ATTAAT | 1 cut(s) | 810 |
| XapI | RAATTY | 1 cut(s) | 427 |
| XceI | RCATGY | 1 cut(s) | 536 |
| XmiI | GTMKAC | 1 cut(s) | 79 |
| XspI | CTAG | 3 cut(s) | 335, 342, 470 |