protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 205 |
| AccB1I | GGYRCC | 1 cut(s) | 776 |
| AciI | CCGC | 1 cut(s) | 663 |
| AcyI | GRCGYC | 2 cut(s) | 202, 777 |
| AfaI | GTAC | 5 cut(s) | 220, 375, 487, 502, 514 |
| AflIII | ACRYGT | 2 cut(s) | 52, 126 |
| AgsI | TTSAA | 5 cut(s) | 134, 337, 846, 947, 962 |
| AhlI | ACTAGT | 1 cut(s) | 955 |
| AjnI | CCWGG | 1 cut(s) | 556 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 28, 29 |
| AluBI | AGCT | 2 cut(s) | 38, 896 |
| AluI | AGCT | 2 cut(s) | 38, 896 |
| Alw26I | GTCTC | 1 cut(s) | 645 |
| AoxI | GGCC | 2 cut(s) | 745, 802 |
| ApeKI | GCWGC | 1 cut(s) | 302 |
| AspLEI | GCGC | 1 cut(s) | 779 |
| BanI | GGYRCC | 1 cut(s) | 776 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 478, 510 |
| BbvI | GCAGC | 1 cut(s) | 314 |
| BceAI | ACGGC | 1 cut(s) | 776 |
| BciT130I | CCWGG | 1 cut(s) | 558 |
| BcoDI | GTCTC | 1 cut(s) | 645 |
| BcuI | ACTAGT | 1 cut(s) | 955 |
| BfaI | CTAG | 2 cut(s) | 254, 956 |
| BfmI | CTRYAG | 3 cut(s) | 17, 39, 222 |
| BfoI | RGCGCY | 1 cut(s) | 780 |
| BisI | GCNGC | 1 cut(s) | 303 |
| BlsI | GCNGC | 1 cut(s) | 304 |
| BmcAI | AGTACT | 1 cut(s) | 220 |
| Bme1390I | CCNGG | 1 cut(s) | 558 |
| BmiI | GGNNCC | 2 cut(s) | 14, 778 |
| BmrFI | CCNGG | 1 cut(s) | 558 |
| BmsI | GCATC | 4 cut(s) | 100, 289, 642, 879 |
| BpuEI | CTTGAG | 1 cut(s) | 839 |
| BsaHI | GRCGYC | 2 cut(s) | 202, 777 |
| BsaJI | CCNNGG | 2 cut(s) | 528, 965 |
| Bse1I | ACTGG | 1 cut(s) | 522 |
| Bse3DI | GCAATG | 2 cut(s) | 305, 335 |
| BseBI | CCWGG | 1 cut(s) | 558 |
| BseDI | CCNNGG | 2 cut(s) | 528, 965 |
| BseGI | GGATG | 2 cut(s) | 152, 193 |
| BseMI | GCAATG | 2 cut(s) | 305, 335 |
| BseMII | CTCAG | 1 cut(s) | 666 |
| BseNI | ACTGG | 1 cut(s) | 522 |
| BseXI | GCAGC | 1 cut(s) | 314 |
| BsgI | GTGCAG | 1 cut(s) | 631 |
| BshFI | GGCC | 2 cut(s) | 747, 804 |
| BshNI | GGYRCC | 1 cut(s) | 776 |
| BslFI | GGGAC | 1 cut(s) | 966 |
| BsmAI | GTCTC | 1 cut(s) | 645 |
| BsmFI | GGGAC | 1 cut(s) | 966 |
| BsmI | GAATGC | 1 cut(s) | 582 |
| BsnI | GGCC | 2 cut(s) | 747, 804 |
| Bsp1407I | TGTACA | 1 cut(s) | 500 |
| Bsp143I | GATC | 2 cut(s) | 286, 391 |
| Bsp19I | CCATGG | 1 cut(s) | 528 |
| BspACI | CCGC | 1 cut(s) | 663 |
| BspANI | GGCC | 2 cut(s) | 747, 804 |
| BspCNI | CTCAG | 1 cut(s) | 665 |
| BspHI | TCATGA | 1 cut(s) | 388 |
| BspLI | GGNNCC | 2 cut(s) | 14, 778 |
| BspMAI | CTGCAG | 1 cut(s) | 21 |
| BspT107I | GGYRCC | 1 cut(s) | 776 |
| BsrDI | GCAATG | 2 cut(s) | 305, 335 |
| BsrGI | TGTACA | 1 cut(s) | 500 |
| BsrI | ACTGG | 1 cut(s) | 522 |
| BssECI | CCNNGG | 2 cut(s) | 528, 965 |
| BssMI | GATC | 2 cut(s) | 286, 391 |
| BssNI | GRCGYC | 2 cut(s) | 202, 777 |
| BssT1I | CCWWGG | 1 cut(s) | 528 |
| Bst2UI | CCWGG | 1 cut(s) | 558 |
| Bst4CI | ACNGT | 3 cut(s) | 119, 505, 553 |
| Bst6I | CTCTTC | 1 cut(s) | 599 |
| BstACI | GRCGYC | 2 cut(s) | 202, 777 |
| BstAUI | TGTACA | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 4 cut(s) | 802, 894, 898, 902 |
| BstDEI | CTNAG | 4 cut(s) | 8, 652, 752, 853 |
| BstDSI | CCRYGG | 1 cut(s) | 528 |
| BstEII | GGTNACC | 1 cut(s) | 264 |
| BstF5I | GGATG | 2 cut(s) | 152, 193 |
| BstH2I | RGCGCY | 1 cut(s) | 780 |
| BstHHI | GCGC | 1 cut(s) | 779 |
| BstKTI | GATC | 2 cut(s) | 289, 394 |
| BstMAI | GTCTC | 1 cut(s) | 645 |
| BstMBI | GATC | 2 cut(s) | 286, 391 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 753, 797 |
| BstNI | CCWGG | 1 cut(s) | 558 |
| BstNSI | RCATGY | 2 cut(s) | 56, 130 |
| BstPI | GGTNACC | 1 cut(s) | 264 |
| BstSCI | CCNGG | 1 cut(s) | 556 |
| BstSFI | CTRYAG | 3 cut(s) | 17, 39, 222 |
| BstV1I | GCAGC | 1 cut(s) | 314 |
| BsuRI | GGCC | 2 cut(s) | 747, 804 |
| BtgI | CCRYGG | 1 cut(s) | 528 |
| BtsCI | GGATG | 2 cut(s) | 152, 193 |
| BtsIMutI | CAGTG | 1 cut(s) | 515 |
| Cac8I | GCNNGC | 4 cut(s) | 802, 894, 898, 902 |
| CciI | TCATGA | 1 cut(s) | 388 |
| CfoI | GCGC | 1 cut(s) | 779 |
| Csp6I | GTAC | 5 cut(s) | 219, 374, 486, 501, 513 |
| CviAII | CATG | 6 cut(s) | 53, 127, 389, 529, 630, 637 |
| CviJI | RGCY | 6 cut(s) | 38, 521, 747, 756, 804, 896 |
| CviKI_1 | RGCY | 6 cut(s) | 38, 521, 747, 756, 804, 896 |
| CviQI | GTAC | 5 cut(s) | 219, 374, 486, 501, 513 |
| DdeI | CTNAG | 4 cut(s) | 8, 652, 752, 853 |
| DinI | GGCGCC | 1 cut(s) | 778 |
| DpnI | GATC | 2 cut(s) | 288, 393 |
| DpnII | GATC | 2 cut(s) | 286, 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 599 |
| EarI | CTCTTC | 1 cut(s) | 599 |
| Eco130I | CCWWGG | 1 cut(s) | 528 |
| Eco91I | GGTNACC | 1 cut(s) | 264 |
| EcoO65I | GGTNACC | 1 cut(s) | 264 |
| EcoRII | CCWGG | 1 cut(s) | 556 |
| EcoT14I | CCWWGG | 1 cut(s) | 528 |
| EcoT22I | ATGCAT | 1 cut(s) | 635 |
| EgeI | GGCGCC | 1 cut(s) | 778 |
| EheI | GGCGCC | 1 cut(s) | 778 |
| ErhI | CCWWGG | 1 cut(s) | 528 |
| FaeI | CATG | 6 cut(s) | 56, 130, 392, 532, 633, 640 |
| FaqI | GGGAC | 1 cut(s) | 966 |
| FatI | CATG | 6 cut(s) | 52, 126, 388, 528, 629, 636 |
| FauNDI | CATATG | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 1 cut(s) | 303 |
| FokI | GGATG | 2 cut(s) | 159, 200 |
| Fsp4HI | GCNGC | 1 cut(s) | 303 |
| FspBI | CTAG | 2 cut(s) | 254, 956 |
| GlaI | GCGC | 1 cut(s) | 778 |
| GluI | GCNGC | 1 cut(s) | 303 |
| HaeII | RGCGCY | 1 cut(s) | 780 |
| HaeIII | GGCC | 2 cut(s) | 747, 804 |
| HhaI | GCGC | 1 cut(s) | 779 |
| Hin1I | GRCGYC | 2 cut(s) | 202, 777 |
| Hin1II | CATG | 6 cut(s) | 56, 130, 392, 532, 633, 640 |
| Hin6I | GCGC | 1 cut(s) | 777 |
| HinP1I | GCGC | 1 cut(s) | 777 |
| HinfI | GANTC | 1 cut(s) | 835 |
| Hpy166II | GTNNAC | 2 cut(s) | 515, 549 |
| Hpy188I | TCNGA | 1 cut(s) | 35 |
| Hpy188III | TCNNGA | 4 cut(s) | 89, 389, 572, 654 |
| Hpy8I | GTNNAC | 2 cut(s) | 515, 549 |
| Hpy99I | CGWCG | 2 cut(s) | 204, 207 |
| HpyAV | CCTTC | 6 cut(s) | 185, 255, 331, 658, 758, 852 |
| HpyCH4III | ACNGT | 3 cut(s) | 119, 505, 553 |
| HpyCH4IV | ACGT | 2 cut(s) | 202, 694 |
| HpyCH4V | TGCA | 9 cut(s) | 19, 302, 310, 316, 328, 491, 612, 633, 892 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 753, 797 |
| HpyF3I | CTNAG | 4 cut(s) | 8, 652, 752, 853 |
| HpySE526I | ACGT | 2 cut(s) | 202, 694 |
| Hsp92I | GRCGYC | 2 cut(s) | 202, 777 |
| Hsp92II | CATG | 6 cut(s) | 56, 130, 392, 532, 633, 640 |
| HspAI | GCGC | 1 cut(s) | 777 |
| KasI | GGCGCC | 1 cut(s) | 776 |
| Kzo9I | GATC | 2 cut(s) | 286, 391 |
| LmnI | GCTCC | 1 cut(s) | 932 |
| Lsp1109I | GCAGC | 1 cut(s) | 314 |
| LweI | GCATC | 4 cut(s) | 100, 289, 642, 879 |
| MaeI | CTAG | 2 cut(s) | 254, 956 |
| MaeII | ACGT | 2 cut(s) | 202, 694 |
| MaeIII | GTNAC | 3 cut(s) | 264, 523, 695 |
| MalI | GATC | 2 cut(s) | 288, 393 |
| MboI | GATC | 2 cut(s) | 286, 391 |
| MboII | GAAGA | 4 cut(s) | 112, 451, 586, 830 |
| MfeI | CAATTG | 2 cut(s) | 540, 846 |
| MluCI | AATT | 6 cut(s) | 27, 134, 238, 540, 827, 846 |
| Mly113I | GGCGCC | 1 cut(s) | 777 |
| MmeI | TCCRAC | 1 cut(s) | 165 |
| MnlI | CCTC | 9 cut(s) | 41, 279, 352, 387, 457, 767, 814, 825, 975 |
| Mph1103I | ATGCAT | 1 cut(s) | 635 |
| MseI | TTAA | 5 cut(s) | 233, 294, 455, 717, 973 |
| MslI | CAYNNNNRTG | 1 cut(s) | 734 |
| MspR9I | CCNGG | 1 cut(s) | 558 |
| MunI | CAATTG | 2 cut(s) | 540, 846 |
| Mva1269I | GAATGC | 1 cut(s) | 582 |
| MvaI | CCWGG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 753, 797 |
| NarI | GGCGCC | 1 cut(s) | 777 |
| NcoI | CCATGG | 1 cut(s) | 528 |
| NdeI | CATATG | 1 cut(s) | 72 |
| NdeII | GATC | 2 cut(s) | 286, 391 |
| NlaIII | CATG | 6 cut(s) | 56, 130, 392, 532, 633, 640 |
| NlaIV | GGNNCC | 2 cut(s) | 14, 778 |
| NmeAIII | GCCGAG | 1 cut(s) | 946 |
| NsiI | ATGCAT | 1 cut(s) | 635 |
| NspI | RCATGY | 2 cut(s) | 56, 130 |
| PagI | TCATGA | 1 cut(s) | 388 |
| PciI | ACATGT | 2 cut(s) | 52, 126 |
| PctI | GAATGC | 1 cut(s) | 582 |
| PfeI | GAWTC | 1 cut(s) | 835 |
| PflFI | GACNNNGTC | 1 cut(s) | 204 |
| PkrI | GCNGC | 1 cut(s) | 304 |
| PluTI | GGCGCC | 1 cut(s) | 780 |
| PscI | ACATGT | 2 cut(s) | 52, 126 |
| Psp6I | CCWGG | 1 cut(s) | 556 |
| PspEI | GGTNACC | 1 cut(s) | 264 |
| PspGI | CCWGG | 1 cut(s) | 556 |
| PspN4I | GGNNCC | 2 cut(s) | 14, 778 |
| PstI | CTGCAG | 1 cut(s) | 21 |
| PsyI | GACNNNGTC | 1 cut(s) | 204 |
| RsaI | GTAC | 5 cut(s) | 220, 375, 487, 502, 514 |
| RsaNI | GTAC | 5 cut(s) | 219, 374, 486, 501, 513 |
| RseI | CAYNNNNRTG | 1 cut(s) | 734 |
| SaqAI | TTAA | 5 cut(s) | 233, 294, 455, 717, 973 |
| SatI | GCNGC | 1 cut(s) | 303 |
| Sau3AI | GATC | 2 cut(s) | 286, 391 |
| ScaI | AGTACT | 1 cut(s) | 220 |
| ScrFI | CCNGG | 1 cut(s) | 558 |
| SfaNI | GCATC | 4 cut(s) | 100, 289, 642, 879 |
| SfcI | CTRYAG | 3 cut(s) | 17, 39, 222 |
| SfoI | GGCGCC | 1 cut(s) | 778 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 734 |
| SmlI | CTYRAG | 1 cut(s) | 818 |
| SmoI | CTYRAG | 1 cut(s) | 818 |
| SpeI | ACTAGT | 1 cut(s) | 955 |
| Sse9I | AATT | 6 cut(s) | 27, 134, 238, 540, 827, 846 |
| SsiI | CCGC | 1 cut(s) | 663 |
| SspDI | GGCGCC | 1 cut(s) | 776 |
| SspI | AATATT | 1 cut(s) | 942 |
| SspMI | CTAG | 2 cut(s) | 254, 956 |
| StyD4I | CCNGG | 1 cut(s) | 556 |
| StyI | CCWWGG | 1 cut(s) | 528 |
| TaaI | ACNGT | 3 cut(s) | 119, 505, 553 |
| TaiI | ACGT | 2 cut(s) | 205, 697 |
| TaqI | TCGA | 1 cut(s) | 597 |
| TasI | AATT | 6 cut(s) | 27, 134, 238, 540, 827, 846 |
| TatI | WGTACW | 3 cut(s) | 218, 500, 512 |
| TfiI | GAWTC | 1 cut(s) | 835 |
| Tru1I | TTAA | 5 cut(s) | 233, 294, 455, 717, 973 |
| Tru9I | TTAA | 5 cut(s) | 233, 294, 455, 717, 973 |
| TscAI | CASTG | 1 cut(s) | 522 |
| TseI | GCWGC | 1 cut(s) | 302 |
| TspDTI | ATGAA | 4 cut(s) | 137, 204, 413, 618 |
| TspGWI | ACGGA | 1 cut(s) | 945 |
| TspRI | CASTG | 1 cut(s) | 522 |
| Tth111I | GACNNNGTC | 1 cut(s) | 204 |
| XceI | RCATGY | 2 cut(s) | 56, 130 |
| XspI | CTAG | 2 cut(s) | 254, 956 |
| ZraI | GACGTC | 1 cut(s) | 203 |
| ZrmI | AGTACT | 1 cut(s) | 220 |
| Zsp2I | ATGCAT | 1 cut(s) | 635 |