protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 162 - 275 | 3.2e-22 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 66, 935 |
| AciI | CCGC | 2 cut(s) | 329, 768 |
| AcoI | YGGCCR | 1 cut(s) | 223 |
| AcsI | RAATTY | 1 cut(s) | 623 |
| AcuI | CTGAAG | 2 cut(s) | 660, 738 |
| AfaI | GTAC | 2 cut(s) | 368, 664 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 401 |
| AgsI | TTSAA | 3 cut(s) | 170, 182, 931 |
| AjnI | CCWGG | 1 cut(s) | 571 |
| AluBI | AGCT | 1 cut(s) | 119 |
| AluI | AGCT | 1 cut(s) | 119 |
| Ama87I | CYCGRG | 2 cut(s) | 400, 473 |
| AoxI | GGCC | 3 cut(s) | 46, 223, 760 |
| ApeKI | GCWGC | 3 cut(s) | 335, 503, 554 |
| ApoI | RAATTY | 1 cut(s) | 623 |
| AsuC2I | CCSGG | 1 cut(s) | 286 |
| AsuHPI | GGTGA | 1 cut(s) | 778 |
| AvaI | CYCGRG | 2 cut(s) | 400, 473 |
| BalI | TGGCCA | 1 cut(s) | 225 |
| BbvI | GCAGC | 3 cut(s) | 347, 515, 541 |
| BccI | CCATC | 5 cut(s) | 38, 419, 473, 790, 791 |
| BceAI | ACGGC | 1 cut(s) | 171 |
| BciT130I | CCWGG | 1 cut(s) | 573 |
| BcnI | CCSGG | 1 cut(s) | 286 |
| BfaI | CTAG | 2 cut(s) | 120, 758 |
| BfmI | CTRYAG | 1 cut(s) | 555 |
| BisI | GCNGC | 3 cut(s) | 336, 504, 555 |
| BlsI | GCNGC | 3 cut(s) | 337, 505, 556 |
| Bme1390I | CCNGG | 2 cut(s) | 286, 573 |
| BmeT110I | CYCGRG | 2 cut(s) | 400, 473 |
| BmiI | GGNNCC | 2 cut(s) | 393, 406 |
| BmrFI | CCNGG | 2 cut(s) | 286, 573 |
| BmsI | GCATC | 3 cut(s) | 637, 705, 891 |
| BpuMI | CCSGG | 1 cut(s) | 286 |
| BsaBI | GATNNNNATC | 1 cut(s) | 782 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 401 |
| Bse1I | ACTGG | 1 cut(s) | 980 |
| Bse3DI | GCAATG | 1 cut(s) | 368 |
| Bse8I | GATNNNNATC | 1 cut(s) | 782 |
| BseBI | CCWGG | 1 cut(s) | 573 |
| BseGI | GGATG | 7 cut(s) | 49, 294, 484, 498, 652, 696, 906 |
| BseJI | GATNNNNATC | 1 cut(s) | 782 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 401 |
| BseMI | GCAATG | 1 cut(s) | 368 |
| BseNI | ACTGG | 1 cut(s) | 980 |
| BseXI | GCAGC | 3 cut(s) | 347, 515, 541 |
| BsgI | GTGCAG | 2 cut(s) | 354, 522 |
| BshFI | GGCC | 3 cut(s) | 48, 225, 762 |
| BsiHKCI | CYCGRG | 2 cut(s) | 400, 473 |
| BsiSI | CCGG | 2 cut(s) | 261, 285 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 401 |
| BsmI | GAATGC | 1 cut(s) | 188 |
| BsnI | GGCC | 3 cut(s) | 48, 225, 762 |
| BsoBI | CYCGRG | 2 cut(s) | 400, 473 |
| Bsp143I | GATC | 2 cut(s) | 319, 777 |
| BspACI | CCGC | 2 cut(s) | 329, 768 |
| BspANI | GGCC | 3 cut(s) | 48, 225, 762 |
| BspLI | GGNNCC | 2 cut(s) | 393, 406 |
| BspMAI | CTGCAG | 1 cut(s) | 559 |
| BsrDI | GCAATG | 1 cut(s) | 368 |
| BsrI | ACTGG | 1 cut(s) | 980 |
| BssMI | GATC | 2 cut(s) | 319, 777 |
| BssNAI | GTATAC | 1 cut(s) | 67 |
| Bst1107I | GTATAC | 1 cut(s) | 67 |
| Bst2UI | CCWGG | 1 cut(s) | 573 |
| Bst4CI | ACNGT | 4 cut(s) | 21, 71, 520, 568 |
| BstDEI | CTNAG | 1 cut(s) | 145 |
| BstF5I | GGATG | 7 cut(s) | 49, 294, 484, 498, 652, 696, 906 |
| BstKTI | GATC | 2 cut(s) | 322, 780 |
| BstMBI | GATC | 2 cut(s) | 319, 777 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 335, 677 |
| BstNI | CCWGG | 1 cut(s) | 573 |
| BstSCI | CCNGG | 2 cut(s) | 284, 571 |
| BstSFI | CTRYAG | 1 cut(s) | 555 |
| BstV1I | GCAGC | 3 cut(s) | 347, 515, 541 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 796 |
| BstZ17I | GTATAC | 1 cut(s) | 67 |
| BsuRI | GGCC | 3 cut(s) | 48, 225, 762 |
| BtsCI | GGATG | 7 cut(s) | 49, 294, 484, 498, 652, 696, 906 |
| BtsIMutI | CAGTG | 2 cut(s) | 76, 973 |
| Csp6I | GTAC | 2 cut(s) | 367, 663 |
| CviAII | CATG | 3 cut(s) | 547, 793, 826 |
| CviQI | GTAC | 2 cut(s) | 367, 663 |
| DdeI | CTNAG | 1 cut(s) | 145 |
| DpnI | GATC | 2 cut(s) | 321, 779 |
| DpnII | GATC | 2 cut(s) | 319, 777 |
| DraI | TTTAAA | 1 cut(s) | 417 |
| EaeI | YGGCCR | 1 cut(s) | 223 |
| Eco147I | AGGCCT | 1 cut(s) | 762 |
| Eco57I | CTGAAG | 2 cut(s) | 660, 738 |
| Eco88I | CYCGRG | 2 cut(s) | 400, 473 |
| EcoRII | CCWGG | 1 cut(s) | 571 |
| FaeI | CATG | 3 cut(s) | 550, 796, 829 |
| FatI | CATG | 3 cut(s) | 546, 792, 825 |
| FauI | CCCGC | 1 cut(s) | 322 |
| FblI | GTMKAC | 2 cut(s) | 66, 935 |
| Fnu4HI | GCNGC | 3 cut(s) | 336, 504, 555 |
| FokI | GGATG | 7 cut(s) | 56, 301, 491, 505, 659, 683, 913 |
| Fsp4HI | GCNGC | 3 cut(s) | 336, 504, 555 |
| FspBI | CTAG | 2 cut(s) | 120, 758 |
| GluI | GCNGC | 3 cut(s) | 336, 504, 555 |
| HaeIII | GGCC | 3 cut(s) | 48, 225, 762 |
| HapII | CCGG | 2 cut(s) | 261, 285 |
| Hin1II | CATG | 3 cut(s) | 550, 796, 829 |
| HincII | GTYRAC | 1 cut(s) | 24 |
| HindII | GTYRAC | 1 cut(s) | 24 |
| HpaII | CCGG | 2 cut(s) | 261, 285 |
| HphI | GGTGA | 1 cut(s) | 778 |
| Hpy166II | GTNNAC | 5 cut(s) | 24, 67, 202, 936, 947 |
| Hpy188I | TCNGA | 3 cut(s) | 140, 646, 834 |
| Hpy188III | TCNNGA | 3 cut(s) | 191, 402, 775 |
| Hpy8I | GTNNAC | 5 cut(s) | 24, 67, 202, 936, 947 |
| HpyAV | CCTTC | 1 cut(s) | 349 |
| HpyCH4III | ACNGT | 4 cut(s) | 21, 71, 520, 568 |
| HpyCH4IV | ACGT | 1 cut(s) | 709 |
| HpyCH4V | TGCA | 7 cut(s) | 270, 335, 349, 503, 557, 671, 904 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 335, 677 |
| HpyF3I | CTNAG | 1 cut(s) | 145 |
| HpySE526I | ACGT | 1 cut(s) | 709 |
| Hsp92II | CATG | 3 cut(s) | 550, 796, 829 |
| Kzo9I | GATC | 2 cut(s) | 319, 777 |
| LmnI | GCTCC | 1 cut(s) | 404 |
| LpnPI | CCDG | 7 cut(s) | 138, 274, 298, 558, 579, 585, 961 |
| Lsp1109I | GCAGC | 3 cut(s) | 347, 515, 541 |
| LweI | GCATC | 3 cut(s) | 637, 705, 891 |
| MaeI | CTAG | 2 cut(s) | 120, 758 |
| MaeII | ACGT | 1 cut(s) | 709 |
| MaeIII | GTNAC | 3 cut(s) | 5, 589, 883 |
| MalI | GATC | 2 cut(s) | 321, 779 |
| MboI | GATC | 2 cut(s) | 319, 777 |
| MboII | GAAGA | 2 cut(s) | 731, 801 |
| MlsI | TGGCCA | 1 cut(s) | 225 |
| MluCI | AATT | 6 cut(s) | 128, 256, 443, 467, 623, 839 |
| MluNI | TGGCCA | 1 cut(s) | 225 |
| Mox20I | TGGCCA | 1 cut(s) | 225 |
| MscI | TGGCCA | 1 cut(s) | 225 |
| MseI | TTAA | 5 cut(s) | 102, 416, 431, 611, 921 |
| MslI | CAYNNNNRTG | 3 cut(s) | 749, 791, 794 |
| Msp20I | TGGCCA | 1 cut(s) | 225 |
| MspI | CCGG | 2 cut(s) | 261, 285 |
| MspR9I | CCNGG | 2 cut(s) | 286, 573 |
| Mva1269I | GAATGC | 1 cut(s) | 188 |
| MvaI | CCWGG | 1 cut(s) | 573 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 335, 677 |
| NciI | CCSGG | 1 cut(s) | 286 |
| NdeII | GATC | 2 cut(s) | 319, 777 |
| NlaIII | CATG | 3 cut(s) | 550, 796, 829 |
| NlaIV | GGNNCC | 2 cut(s) | 393, 406 |
| NmuCI | GTSAC | 3 cut(s) | 5, 589, 883 |
| PaeR7I | CTCGAG | 1 cut(s) | 473 |
| PceI | AGGCCT | 1 cut(s) | 762 |
| PctI | GAATGC | 1 cut(s) | 188 |
| PkrI | GCNGC | 3 cut(s) | 337, 505, 556 |
| Psp6I | CCWGG | 1 cut(s) | 571 |
| PspGI | CCWGG | 1 cut(s) | 571 |
| PspN4I | GGNNCC | 2 cut(s) | 393, 406 |
| PspXI | VCTCGAGB | 1 cut(s) | 473 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 552, 584 |
| PstI | CTGCAG | 1 cut(s) | 559 |
| RsaI | GTAC | 2 cut(s) | 368, 664 |
| RsaNI | GTAC | 2 cut(s) | 367, 663 |
| RseI | CAYNNNNRTG | 3 cut(s) | 749, 791, 794 |
| SaqAI | TTAA | 5 cut(s) | 102, 416, 431, 611, 921 |
| SatI | GCNGC | 3 cut(s) | 336, 504, 555 |
| Sau3AI | GATC | 2 cut(s) | 319, 777 |
| ScrFI | CCNGG | 2 cut(s) | 286, 573 |
| SetI | ASST | 5 cut(s) | 99, 121, 378, 643, 712 |
| SfaNI | GCATC | 3 cut(s) | 637, 705, 891 |
| SfcI | CTRYAG | 1 cut(s) | 555 |
| Sfr274I | CTCGAG | 1 cut(s) | 473 |
| SlaI | CTCGAG | 1 cut(s) | 473 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 749, 791, 794 |
| SmlI | CTYRAG | 1 cut(s) | 473 |
| SmoI | CTYRAG | 1 cut(s) | 473 |
| Sse9I | AATT | 6 cut(s) | 128, 256, 443, 467, 623, 839 |
| SseBI | AGGCCT | 1 cut(s) | 762 |
| SsiI | CCGC | 2 cut(s) | 329, 768 |
| SspMI | CTAG | 2 cut(s) | 120, 758 |
| StuI | AGGCCT | 1 cut(s) | 762 |
| StyD4I | CCNGG | 2 cut(s) | 284, 571 |
| TaaI | ACNGT | 4 cut(s) | 21, 71, 520, 568 |
| TaiI | ACGT | 1 cut(s) | 712 |
| TaqI | TCGA | 2 cut(s) | 474, 957 |
| TasI | AATT | 6 cut(s) | 128, 256, 443, 467, 623, 839 |
| TatI | WGTACW | 1 cut(s) | 662 |
| Tru1I | TTAA | 5 cut(s) | 102, 416, 431, 611, 921 |
| Tru9I | TTAA | 5 cut(s) | 102, 416, 431, 611, 921 |
| TscAI | CASTG | 2 cut(s) | 76, 980 |
| TseFI | GTSAC | 3 cut(s) | 5, 589, 883 |
| TseI | GCWGC | 3 cut(s) | 335, 503, 554 |
| Tsp45I | GTSAC | 3 cut(s) | 5, 589, 883 |
| TspDTI | ATGAA | 4 cut(s) | 45, 72, 811, 850 |
| TspGWI | ACGGA | 2 cut(s) | 168, 630 |
| TspRI | CASTG | 2 cut(s) | 76, 980 |
| XapI | RAATTY | 1 cut(s) | 623 |
| XhoI | CTCGAG | 1 cut(s) | 473 |
| XmiI | GTMKAC | 2 cut(s) | 66, 935 |
| XspI | CTAG | 2 cut(s) | 120, 758 |