protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 448 - 560 | 5.2e-27 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 752 |
| AarI | CACCTGC | 1 cut(s) | 371 |
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccBSI | CCGCTC | 2 cut(s) | 161, 494 |
| AccII | CGCG | 1 cut(s) | 1294 |
| AccIII | TCCGGA | 1 cut(s) | 1249 |
| AclWI | GGATC | 3 cut(s) | 476, 794, 1263 |
| AcsI | RAATTY | 4 cut(s) | 880, 902, 950, 1551 |
| AcuI | CTGAAG | 2 cut(s) | 600, 1515 |
| AfaI | GTAC | 4 cut(s) | 289, 622, 858, 1372 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 568 |
| AjiI | CACGTC | 1 cut(s) | 1560 |
| AjnI | CCWGG | 2 cut(s) | 1426, 1801 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 968, 1000, 1595, 1627 |
| AluBI | AGCT | 7 cut(s) | 344, 373, 416, 567, 652, 1193, 1361 |
| AluI | AGCT | 7 cut(s) | 344, 373, 416, 567, 652, 1193, 1361 |
| Alw21I | GWGCWC | 1 cut(s) | 1387 |
| AlwI | GGATC | 3 cut(s) | 476, 794, 1263 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1427 |
| Ama87I | CYCGRG | 1 cut(s) | 140 |
| Aor13HI | TCCGGA | 1 cut(s) | 1249 |
| AoxI | GGCC | 1 cut(s) | 1615 |
| ApeKI | GCWGC | 8 cut(s) | 89, 693, 825, 929, 1190, 1409, 1412, 1643 |
| ApoI | RAATTY | 4 cut(s) | 880, 902, 950, 1551 |
| AspA2I | CCTAGG | 2 cut(s) | 781, 1598 |
| AspS9I | GGNCC | 1 cut(s) | 1615 |
| AsuHPI | GGTGA | 3 cut(s) | 290, 1149, 1339 |
| AsuII | TTCGAA | 1 cut(s) | 101 |
| AvaI | CYCGRG | 1 cut(s) | 140 |
| AvrII | CCTAGG | 2 cut(s) | 781, 1598 |
| BbsI | GAAGAC | 1 cut(s) | 588 |
| Bbv12I | GWGCWC | 1 cut(s) | 1387 |
| BbvI | GCAGC | 8 cut(s) | 76, 705, 837, 941, 1202, 1396, 1424, 1630 |
| BccI | CCATC | 2 cut(s) | 23, 29 |
| BceAI | ACGGC | 3 cut(s) | 223, 442, 1491 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 81, 115, 470, 504 |
| BciT130I | CCWGG | 2 cut(s) | 1428, 1803 |
| BciVI | GTATCC | 1 cut(s) | 741 |
| BfaI | CTAG | 3 cut(s) | 782, 1245, 1599 |
| BfmI | CTRYAG | 2 cut(s) | 996, 1410 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BfuI | GTATCC | 1 cut(s) | 741 |
| BglII | AGATCT | 1 cut(s) | 1779 |
| BlnI | CCTAGG | 2 cut(s) | 781, 1598 |
| BmcAI | AGTACT | 1 cut(s) | 858 |
| Bme1390I | CCNGG | 2 cut(s) | 1428, 1803 |
| BmeT110I | CYCGRG | 1 cut(s) | 140 |
| BmgBI | CACGTC | 1 cut(s) | 1560 |
| BmgT120I | GGNCC | 1 cut(s) | 1615 |
| BmiI | GGNNCC | 1 cut(s) | 1016 |
| BmrFI | CCNGG | 2 cut(s) | 1428, 1803 |
| BmsI | GCATC | 2 cut(s) | 193, 1746 |
| BpiI | GAAGAC | 1 cut(s) | 588 |
| Bpu14I | TTCGAA | 1 cut(s) | 101 |
| BpuEI | CTTGAG | 1 cut(s) | 638 |
| BsaAI | YACGTR | 1 cut(s) | 1184 |
| BsaJI | CCNNGG | 4 cut(s) | 141, 781, 1598, 1834 |
| BsaWI | WCCGGW | 1 cut(s) | 1249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 568 |
| Bse3DI | GCAATG | 2 cut(s) | 695, 703 |
| BseAI | TCCGGA | 1 cut(s) | 1249 |
| BseBI | CCWGG | 2 cut(s) | 1428, 1803 |
| BseDI | CCNNGG | 4 cut(s) | 141, 781, 1598, 1834 |
| BseGI | GGATG | 1 cut(s) | 1761 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 568 |
| BseMI | GCAATG | 2 cut(s) | 695, 703 |
| BseMII | CTCAG | 1 cut(s) | 523 |
| BseRI | GAGGAG | 2 cut(s) | 383, 1241 |
| BseXI | GCAGC | 8 cut(s) | 76, 705, 837, 941, 1202, 1396, 1424, 1630 |
| BsgI | GTGCAG | 1 cut(s) | 1209 |
| Bsh1236I | CGCG | 1 cut(s) | 1294 |
| BshFI | GGCC | 1 cut(s) | 1617 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 140 |
| BsiSI | CCGG | 1 cut(s) | 1250 |
| BslFI | GGGAC | 2 cut(s) | 122, 1161 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 568 |
| BsmFI | GGGAC | 2 cut(s) | 122, 1161 |
| BsmI | GAATGC | 2 cut(s) | 632, 1415 |
| BsnI | GGCC | 1 cut(s) | 1617 |
| BsoBI | CYCGRG | 1 cut(s) | 140 |
| Bsp119I | TTCGAA | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1387 |
| Bsp13I | TCCGGA | 1 cut(s) | 1249 |
| Bsp1407I | TGTACA | 3 cut(s) | 287, 620, 1370 |
| Bsp143I | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| BspANI | GGCC | 1 cut(s) | 1617 |
| BspCNI | CTCAG | 1 cut(s) | 522 |
| BspEI | TCCGGA | 1 cut(s) | 1249 |
| BspFNI | CGCG | 1 cut(s) | 1294 |
| BspHI | TCATGA | 1 cut(s) | 1101 |
| BspLI | GGNNCC | 1 cut(s) | 1016 |
| BspMAI | CTGCAG | 1 cut(s) | 1414 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 3 cut(s) | 476, 794, 1263 |
| BspT104I | TTCGAA | 1 cut(s) | 101 |
| BsrBI | CCGCTC | 2 cut(s) | 161, 494 |
| BsrDI | GCAATG | 2 cut(s) | 695, 703 |
| BsrGI | TGTACA | 3 cut(s) | 287, 620, 1370 |
| BssECI | CCNNGG | 4 cut(s) | 141, 781, 1598, 1834 |
| BssMI | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| BssT1I | CCWWGG | 3 cut(s) | 781, 1598, 1834 |
| Bst2UI | CCWGG | 2 cut(s) | 1428, 1803 |
| Bst4CI | ACNGT | 8 cut(s) | 50, 184, 231, 278, 305, 1375, 1423, 1451 |
| Bst6I | CTCTTC | 1 cut(s) | 864 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 203 |
| BstAUI | TGTACA | 3 cut(s) | 287, 620, 1370 |
| BstBAI | YACGTR | 1 cut(s) | 1184 |
| BstBI | TTCGAA | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 2 cut(s) | 541, 650 |
| BstDEI | CTNAG | 2 cut(s) | 509, 1308 |
| BstF5I | GGATG | 1 cut(s) | 1761 |
| BstFNI | CGCG | 1 cut(s) | 1294 |
| BstKTI | GATC | 5 cut(s) | 484, 547, 789, 1258, 1782 |
| BstMBI | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 699, 1664 |
| BstNI | CCWGG | 2 cut(s) | 1428, 1803 |
| BstNSI | RCATGY | 1 cut(s) | 621 |
| BstSCI | CCNGG | 2 cut(s) | 1426, 1801 |
| BstSFI | CTRYAG | 2 cut(s) | 996, 1410 |
| BstUI | CGCG | 1 cut(s) | 1294 |
| BstV1I | GCAGC | 8 cut(s) | 76, 705, 837, 941, 1202, 1396, 1424, 1630 |
| BstV2I | GAAGAC | 1 cut(s) | 588 |
| BstX2I | RGATCY | 2 cut(s) | 1255, 1779 |
| BstYI | RGATCY | 2 cut(s) | 1255, 1779 |
| BsuI | GTATCC | 1 cut(s) | 741 |
| BsuRI | GGCC | 1 cut(s) | 1617 |
| BtrI | CACGTC | 1 cut(s) | 1560 |
| BtsCI | GGATG | 1 cut(s) | 1761 |
| BtsIMutI | CAGTG | 1 cut(s) | 63 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 2 cut(s) | 541, 650 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1427 |
| CciI | TCATGA | 1 cut(s) | 1101 |
| Cfr13I | GGNCC | 1 cut(s) | 1615 |
| CseI | GACGC | 1 cut(s) | 1511 |
| Csp6I | GTAC | 4 cut(s) | 288, 621, 857, 1371 |
| CviQI | GTAC | 4 cut(s) | 288, 621, 857, 1371 |
| DdeI | CTNAG | 2 cut(s) | 509, 1308 |
| DpnI | GATC | 5 cut(s) | 483, 546, 788, 1257, 1781 |
| DpnII | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| Eam1104I | CTCTTC | 1 cut(s) | 864 |
| EarI | CTCTTC | 1 cut(s) | 864 |
| Eco130I | CCWWGG | 3 cut(s) | 781, 1598, 1834 |
| Eco57I | CTGAAG | 2 cut(s) | 600, 1515 |
| Eco88I | CYCGRG | 1 cut(s) | 140 |
| EcoRI | GAATTC | 2 cut(s) | 950, 1551 |
| EcoRII | CCWGG | 2 cut(s) | 1426, 1801 |
| EcoT14I | CCWWGG | 3 cut(s) | 781, 1598, 1834 |
| ErhI | CCWWGG | 3 cut(s) | 781, 1598, 1834 |
| FaqI | GGGAC | 2 cut(s) | 122, 1161 |
| FauI | CCCGC | 2 cut(s) | 204, 1138 |
| FokI | GGATG | 1 cut(s) | 1768 |
| FspBI | CTAG | 3 cut(s) | 782, 1245, 1599 |
| HaeIII | GGCC | 1 cut(s) | 1617 |
| HapII | CCGG | 1 cut(s) | 1250 |
| HgaI | GACGC | 1 cut(s) | 1511 |
| HincII | GTYRAC | 1 cut(s) | 1270 |
| HindII | GTYRAC | 1 cut(s) | 1270 |
| HindIII | AAGCTT | 2 cut(s) | 414, 565 |
| HinfI | GANTC | 3 cut(s) | 976, 1312, 1694 |
| HpaI | GTTAAC | 1 cut(s) | 1270 |
| HpaII | CCGG | 1 cut(s) | 1250 |
| HphI | GGTGA | 3 cut(s) | 290, 1149, 1339 |
| Hpy166II | GTNNAC | 2 cut(s) | 623, 1270 |
| Hpy188I | TCNGA | 3 cut(s) | 592, 1623, 1859 |
| Hpy188III | TCNNGA | 6 cut(s) | 680, 725, 1102, 1250, 1259, 1465 |
| Hpy8I | GTNNAC | 2 cut(s) | 623, 1270 |
| Hpy99I | CGWCG | 1 cut(s) | 176 |
| HpyAV | CCTTC | 3 cut(s) | 636, 1324, 1628 |
| HpyCH4III | ACNGT | 8 cut(s) | 50, 184, 231, 278, 305, 1375, 1423, 1451 |
| HpyCH4IV | ACGT | 4 cut(s) | 111, 1183, 1559, 1564 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 699, 1664 |
| HpyF3I | CTNAG | 2 cut(s) | 509, 1308 |
| HpySE526I | ACGT | 4 cut(s) | 111, 1183, 1559, 1564 |
| Kpn2I | TCCGGA | 1 cut(s) | 1249 |
| KspAI | GTTAAC | 1 cut(s) | 1270 |
| Kzo9I | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| LmnI | GCTCC | 2 cut(s) | 166, 370 |
| Lsp1109I | GCAGC | 8 cut(s) | 76, 705, 837, 941, 1202, 1396, 1424, 1630 |
| LweI | GCATC | 2 cut(s) | 193, 1746 |
| MaeI | CTAG | 3 cut(s) | 782, 1245, 1599 |
| MaeII | ACGT | 4 cut(s) | 111, 1183, 1559, 1564 |
| MaeIII | GTNAC | 5 cut(s) | 148, 460, 1393, 1560, 1723 |
| MalI | GATC | 5 cut(s) | 483, 546, 788, 1257, 1781 |
| MbiI | CCGCTC | 2 cut(s) | 161, 494 |
| MboI | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| MboII | GAAGA | 4 cut(s) | 593, 881, 1586, 1589 |
| MfeI | CAATTG | 1 cut(s) | 1737 |
| MflI | RGATCY | 2 cut(s) | 1255, 1779 |
| MhlI | GDGCHC | 1 cut(s) | 1387 |
| MlyI | GAGTC | 1 cut(s) | 1688 |
| MmeI | TCCRAC | 2 cut(s) | 188, 1212 |
| MroI | TCCGGA | 1 cut(s) | 1249 |
| MseI | TTAA | 7 cut(s) | 129, 423, 876, 884, 1059, 1269, 1829 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1750 |
| MspI | CCGG | 1 cut(s) | 1250 |
| MspR9I | CCNGG | 2 cut(s) | 1428, 1803 |
| MunI | CAATTG | 1 cut(s) | 1737 |
| Mva1269I | GAATGC | 2 cut(s) | 632, 1415 |
| MvaI | CCWGG | 2 cut(s) | 1428, 1803 |
| MvnI | CGCG | 1 cut(s) | 1294 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 699, 1664 |
| NdeII | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| NlaIV | GGNNCC | 1 cut(s) | 1016 |
| NmuCI | GTSAC | 2 cut(s) | 460, 1560 |
| NspI | RCATGY | 1 cut(s) | 621 |
| NspV | TTCGAA | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 1101 |
| PaqCI | CACCTGC | 1 cut(s) | 371 |
| PctI | GAATGC | 2 cut(s) | 632, 1415 |
| PfeI | GAWTC | 2 cut(s) | 976, 1312 |
| PleI | GAGTC | 1 cut(s) | 1688 |
| PpsI | GAGTC | 1 cut(s) | 1688 |
| Ppu21I | YACGTR | 1 cut(s) | 1184 |
| PsiI | TTATAA | 1 cut(s) | 752 |
| Psp6I | CCWGG | 2 cut(s) | 1426, 1801 |
| PspGI | CCWGG | 2 cut(s) | 1426, 1801 |
| PspN4I | GGNNCC | 1 cut(s) | 1016 |
| PspPI | GGNCC | 1 cut(s) | 1615 |
| PstI | CTGCAG | 1 cut(s) | 1414 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1427 |
| PsuI | RGATCY | 2 cut(s) | 1255, 1779 |
| RsaI | GTAC | 4 cut(s) | 289, 622, 858, 1372 |
| RsaNI | GTAC | 4 cut(s) | 288, 621, 857, 1371 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1750 |
| SaqAI | TTAA | 7 cut(s) | 129, 423, 876, 884, 1059, 1269, 1829 |
| Sau3AI | GATC | 5 cut(s) | 481, 544, 786, 1255, 1779 |
| Sau96I | GGNCC | 1 cut(s) | 1615 |
| ScaI | AGTACT | 1 cut(s) | 858 |
| SchI | GAGTC | 1 cut(s) | 1688 |
| ScrFI | CCNGG | 2 cut(s) | 1428, 1803 |
| SduI | GDGCHC | 1 cut(s) | 1387 |
| SfaNI | GCATC | 2 cut(s) | 193, 1746 |
| SfcI | CTRYAG | 2 cut(s) | 996, 1410 |
| SfuI | TTCGAA | 1 cut(s) | 101 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1750 |
| SmlI | CTYRAG | 1 cut(s) | 653 |
| SmoI | CTYRAG | 1 cut(s) | 653 |
| SspMI | CTAG | 3 cut(s) | 782, 1245, 1599 |
| StyD4I | CCNGG | 2 cut(s) | 1426, 1801 |
| StyI | CCWWGG | 3 cut(s) | 781, 1598, 1834 |
| TaaI | ACNGT | 8 cut(s) | 50, 184, 231, 278, 305, 1375, 1423, 1451 |
| TaiI | ACGT | 4 cut(s) | 114, 1186, 1562, 1567 |
| TaqI | TCGA | 7 cut(s) | 101, 201, 336, 390, 411, 1035, 1346 |
| TatI | WGTACW | 4 cut(s) | 287, 620, 856, 1370 |
| TauI | GCSGC | 2 cut(s) | 494, 1667 |
| TfiI | GAWTC | 2 cut(s) | 976, 1312 |
| Tru1I | TTAA | 7 cut(s) | 129, 423, 876, 884, 1059, 1269, 1829 |
| Tru9I | TTAA | 7 cut(s) | 129, 423, 876, 884, 1059, 1269, 1829 |
| TscAI | CASTG | 1 cut(s) | 70 |
| TseFI | GTSAC | 2 cut(s) | 460, 1560 |
| TseI | GCWGC | 8 cut(s) | 89, 693, 825, 929, 1190, 1409, 1412, 1643 |
| Tsp45I | GTSAC | 2 cut(s) | 460, 1560 |
| TspDTI | ATGAA | 7 cut(s) | 74, 342, 624, 821, 943, 1301, 1364 |
| TspGWI | ACGGA | 1 cut(s) | 380 |
| TspRI | CASTG | 1 cut(s) | 70 |
| XapI | RAATTY | 4 cut(s) | 880, 902, 950, 1551 |
| XceI | RCATGY | 1 cut(s) | 621 |
| XmaJI | CCTAGG | 2 cut(s) | 781, 1598 |
| XspI | CTAG | 3 cut(s) | 782, 1245, 1599 |
| ZrmI | AGTACT | 1 cut(s) | 858 |