protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 826 |
| AciI | CCGC | 4 cut(s) | 21, 396, 802, 819 |
| AclWI | GGATC | 2 cut(s) | 484, 497 |
| AcoI | YGGCCR | 1 cut(s) | 747 |
| AcsI | RAATTY | 3 cut(s) | 210, 289, 917 |
| AfaI | GTAC | 2 cut(s) | 10, 442 |
| AgsI | TTSAA | 5 cut(s) | 295, 415, 536, 770, 923 |
| AjnI | CCWGG | 1 cut(s) | 36 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 474, 506 |
| AluBI | AGCT | 5 cut(s) | 17, 158, 446, 500, 956 |
| AluI | AGCT | 5 cut(s) | 17, 158, 446, 500, 956 |
| Alw26I | GTCTC | 2 cut(s) | 617, 916 |
| AlwI | GGATC | 2 cut(s) | 484, 497 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 956 |
| Ama87I | CYCGRG | 1 cut(s) | 893 |
| AoxI | GGCC | 4 cut(s) | 192, 548, 576, 747 |
| ApeKI | GCWGC | 3 cut(s) | 17, 350, 775 |
| ApoI | RAATTY | 3 cut(s) | 210, 289, 917 |
| AseI | ATTAAT | 2 cut(s) | 848, 906 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 290, 531 |
| AspLEI | GCGC | 2 cut(s) | 668, 826 |
| AspS9I | GGNCC | 2 cut(s) | 549, 576 |
| AsuC2I | CCSGG | 3 cut(s) | 245, 524, 552 |
| AsuHPI | GGTGA | 2 cut(s) | 335, 388 |
| AvaI | CYCGRG | 1 cut(s) | 893 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 444, 477 |
| BalI | TGGCCA | 1 cut(s) | 749 |
| BamHI | GGATCC | 1 cut(s) | 489 |
| BbsI | GAAGAC | 1 cut(s) | 182 |
| BbvI | GCAGC | 3 cut(s) | 4, 362, 787 |
| BccI | CCATC | 1 cut(s) | 695 |
| BceAI | ACGGC | 3 cut(s) | 376, 442, 885 |
| BciT130I | CCWGG | 1 cut(s) | 38 |
| BclI | TGATCA | 1 cut(s) | 958 |
| BcnI | CCSGG | 3 cut(s) | 245, 524, 552 |
| BcoDI | GTCTC | 2 cut(s) | 617, 916 |
| BfmI | CTRYAG | 3 cut(s) | 501, 580, 1007 |
| BfoI | RGCGCY | 1 cut(s) | 669 |
| BglII | AGATCT | 1 cut(s) | 106 |
| BisI | GCNGC | 4 cut(s) | 18, 21, 351, 776 |
| BlsI | GCNGC | 4 cut(s) | 19, 22, 352, 777 |
| Bme1390I | CCNGG | 4 cut(s) | 38, 245, 524, 552 |
| BmeT110I | CYCGRG | 1 cut(s) | 893 |
| BmgT120I | GGNCC | 2 cut(s) | 549, 576 |
| BmiI | GGNNCC | 1 cut(s) | 491 |
| BmrFI | CCNGG | 4 cut(s) | 38, 245, 524, 552 |
| BmsI | GCATC | 2 cut(s) | 130, 476 |
| BpiI | GAAGAC | 1 cut(s) | 182 |
| BpmI | CTGGAG | 1 cut(s) | 348 |
| Bpu10I | CCTNAGC | 1 cut(s) | 988 |
| BpuEI | CTTGAG | 1 cut(s) | 654 |
| BpuMI | CCSGG | 3 cut(s) | 245, 524, 552 |
| BsaJI | CCNNGG | 4 cut(s) | 189, 261, 354, 750 |
| Bse1I | ACTGG | 4 cut(s) | 24, 331, 491, 566 |
| BseBI | CCWGG | 1 cut(s) | 38 |
| BseDI | CCNNGG | 4 cut(s) | 189, 261, 354, 750 |
| BseGI | GGATG | 3 cut(s) | 121, 376, 736 |
| BseMII | CTCAG | 4 cut(s) | 216, 635, 927, 1002 |
| BseNI | ACTGG | 4 cut(s) | 24, 331, 491, 566 |
| BseXI | GCAGC | 3 cut(s) | 4, 362, 787 |
| Bsh1236I | CGCG | 1 cut(s) | 826 |
| BshFI | GGCC | 4 cut(s) | 194, 550, 578, 749 |
| BsiHKCI | CYCGRG | 1 cut(s) | 893 |
| BsiSI | CCGG | 3 cut(s) | 244, 523, 552 |
| BslFI | GGGAC | 3 cut(s) | 235, 317, 734 |
| BsmAI | GTCTC | 2 cut(s) | 617, 916 |
| BsmFI | GGGAC | 3 cut(s) | 235, 317, 734 |
| BsmI | GAATGC | 1 cut(s) | 190 |
| BsnI | GGCC | 4 cut(s) | 194, 550, 578, 749 |
| BsoBI | CYCGRG | 1 cut(s) | 893 |
| Bsp143I | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| Bsp19I | CCATGG | 2 cut(s) | 354, 750 |
| BspACI | CCGC | 4 cut(s) | 21, 396, 802, 819 |
| BspANI | GGCC | 4 cut(s) | 194, 550, 578, 749 |
| BspCNI | CTCAG | 4 cut(s) | 217, 636, 926, 1001 |
| BspFNI | CGCG | 1 cut(s) | 826 |
| BspLI | GGNNCC | 1 cut(s) | 491 |
| BspPI | GGATC | 2 cut(s) | 484, 497 |
| BsrI | ACTGG | 4 cut(s) | 24, 331, 491, 566 |
| BssECI | CCNNGG | 4 cut(s) | 189, 261, 354, 750 |
| BssMI | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| BssT1I | CCWWGG | 4 cut(s) | 189, 261, 354, 750 |
| Bst2UI | CCWGG | 1 cut(s) | 38 |
| Bst4CI | ACNGT | 2 cut(s) | 384, 457 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 473, 781 |
| BstC8I | GCNNGC | 2 cut(s) | 201, 796 |
| BstDEI | CTNAG | 4 cut(s) | 225, 644, 913, 988 |
| BstDSI | CCRYGG | 2 cut(s) | 354, 750 |
| BstF5I | GGATG | 3 cut(s) | 121, 376, 736 |
| BstFNI | CGCG | 1 cut(s) | 826 |
| BstH2I | RGCGCY | 1 cut(s) | 669 |
| BstHHI | GCGC | 2 cut(s) | 668, 826 |
| BstKTI | GATC | 5 cut(s) | 79, 109, 340, 492, 961 |
| BstMAI | GTCTC | 2 cut(s) | 617, 916 |
| BstMBI | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 26, 200, 266, 275, 473, 781 |
| BstNI | CCWGG | 1 cut(s) | 38 |
| BstNSI | RCATGY | 1 cut(s) | 203 |
| BstSCI | CCNGG | 4 cut(s) | 36, 243, 522, 550 |
| BstSFI | CTRYAG | 3 cut(s) | 501, 580, 1007 |
| BstUI | CGCG | 1 cut(s) | 826 |
| BstV1I | GCAGC | 3 cut(s) | 4, 362, 787 |
| BstV2I | GAAGAC | 1 cut(s) | 182 |
| BstX2I | RGATCY | 2 cut(s) | 106, 489 |
| BstYI | RGATCY | 2 cut(s) | 106, 489 |
| BsuRI | GGCC | 4 cut(s) | 194, 550, 578, 749 |
| BtgI | CCRYGG | 2 cut(s) | 354, 750 |
| BtsCI | GGATG | 3 cut(s) | 121, 376, 736 |
| BtsIMutI | CAGTG | 3 cut(s) | 31, 324, 484 |
| Cac8I | GCNNGC | 2 cut(s) | 201, 796 |
| CaiI | CAGNNNCTG | 1 cut(s) | 956 |
| CfoI | GCGC | 2 cut(s) | 668, 826 |
| Cfr13I | GGNCC | 2 cut(s) | 549, 576 |
| Csp6I | GTAC | 2 cut(s) | 9, 441 |
| CviAII | CATG | 6 cut(s) | 200, 270, 355, 508, 717, 751 |
| CviQI | GTAC | 2 cut(s) | 9, 441 |
| DdeI | CTNAG | 4 cut(s) | 225, 644, 913, 988 |
| DpnI | GATC | 5 cut(s) | 78, 108, 339, 491, 960 |
| DpnII | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| DraI | TTTAAA | 1 cut(s) | 814 |
| EaeI | YGGCCR | 1 cut(s) | 747 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| EciI | GGCGGA | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 4 cut(s) | 189, 261, 354, 750 |
| Eco147I | AGGCCT | 1 cut(s) | 194 |
| Eco88I | CYCGRG | 1 cut(s) | 893 |
| EcoO109I | RGGNCCY | 1 cut(s) | 576 |
| EcoRII | CCWGG | 1 cut(s) | 36 |
| EcoT14I | CCWWGG | 4 cut(s) | 189, 261, 354, 750 |
| ErhI | CCWWGG | 4 cut(s) | 189, 261, 354, 750 |
| FaeI | CATG | 6 cut(s) | 203, 273, 358, 511, 720, 754 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 77, 109 |
| FaqI | GGGAC | 3 cut(s) | 235, 317, 734 |
| FatI | CATG | 6 cut(s) | 199, 269, 354, 507, 716, 750 |
| FbaI | TGATCA | 1 cut(s) | 958 |
| Fnu4HI | GCNGC | 4 cut(s) | 18, 21, 351, 776 |
| FokI | GGATG | 3 cut(s) | 128, 383, 723 |
| Fsp4HI | GCNGC | 4 cut(s) | 18, 21, 351, 776 |
| GlaI | GCGC | 2 cut(s) | 667, 825 |
| GluI | GCNGC | 4 cut(s) | 18, 21, 351, 776 |
| GsuI | CTGGAG | 1 cut(s) | 348 |
| HaeII | RGCGCY | 1 cut(s) | 669 |
| HaeIII | GGCC | 4 cut(s) | 194, 550, 578, 749 |
| HapII | CCGG | 3 cut(s) | 244, 523, 552 |
| HhaI | GCGC | 2 cut(s) | 668, 826 |
| Hin1II | CATG | 6 cut(s) | 203, 273, 358, 511, 720, 754 |
| Hin6I | GCGC | 2 cut(s) | 666, 824 |
| HinP1I | GCGC | 2 cut(s) | 666, 824 |
| HinfI | GANTC | 1 cut(s) | 976 |
| HpaII | CCGG | 3 cut(s) | 244, 523, 552 |
| HphI | GGTGA | 2 cut(s) | 335, 388 |
| Hpy188I | TCNGA | 3 cut(s) | 916, 952, 972 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 740, 893 |
| Hpy99I | CGWCG | 2 cut(s) | 125, 764 |
| HpyAV | CCTTC | 2 cut(s) | 353, 942 |
| HpyCH4III | ACNGT | 2 cut(s) | 384, 457 |
| HpyCH4IV | ACGT | 3 cut(s) | 366, 607, 964 |
| HpyCH4V | TGCA | 7 cut(s) | 29, 143, 199, 203, 467, 476, 716 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 26, 200, 266, 275, 473, 781 |
| HpyF3I | CTNAG | 4 cut(s) | 225, 644, 913, 988 |
| HpySE526I | ACGT | 3 cut(s) | 366, 607, 964 |
| Hsp92II | CATG | 6 cut(s) | 203, 273, 358, 511, 720, 754 |
| HspAI | GCGC | 2 cut(s) | 666, 824 |
| Ksp22I | TGATCA | 1 cut(s) | 958 |
| Kzo9I | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| LmnI | GCTCC | 1 cut(s) | 821 |
| Lsp1109I | GCAGC | 3 cut(s) | 4, 362, 787 |
| LweI | GCATC | 2 cut(s) | 130, 476 |
| MaeII | ACGT | 3 cut(s) | 366, 607, 964 |
| MalI | GATC | 5 cut(s) | 78, 108, 339, 491, 960 |
| MboI | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| MboII | GAAGA | 4 cut(s) | 137, 187, 332, 935 |
| MfeI | CAATTG | 1 cut(s) | 30 |
| MflI | RGATCY | 2 cut(s) | 106, 489 |
| MlsI | TGGCCA | 1 cut(s) | 749 |
| MluCI | AATT | 7 cut(s) | 30, 204, 210, 289, 296, 845, 917 |
| MluNI | TGGCCA | 1 cut(s) | 749 |
| MnlI | CCTC | 6 cut(s) | 144, 268, 367, 567, 628, 966 |
| Mox20I | TGGCCA | 1 cut(s) | 749 |
| MroXI | GAANNNNTTC | 2 cut(s) | 290, 531 |
| MscI | TGGCCA | 1 cut(s) | 749 |
| MseI | TTAA | 8 cut(s) | 48, 84, 207, 299, 725, 813, 848, 906 |
| Msp20I | TGGCCA | 1 cut(s) | 749 |
| MspI | CCGG | 3 cut(s) | 244, 523, 552 |
| MspR9I | CCNGG | 4 cut(s) | 38, 245, 524, 552 |
| MunI | CAATTG | 1 cut(s) | 30 |
| Mva1269I | GAATGC | 1 cut(s) | 190 |
| MvaI | CCWGG | 1 cut(s) | 38 |
| MvnI | CGCG | 1 cut(s) | 826 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 26, 200, 266, 275, 473, 781 |
| NciI | CCSGG | 3 cut(s) | 245, 524, 552 |
| NcoI | CCATGG | 2 cut(s) | 354, 750 |
| NdeII | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| NlaIII | CATG | 6 cut(s) | 203, 273, 358, 511, 720, 754 |
| NlaIV | GGNNCC | 1 cut(s) | 491 |
| NspI | RCATGY | 1 cut(s) | 203 |
| PaeI | GCATGC | 1 cut(s) | 203 |
| PceI | AGGCCT | 1 cut(s) | 194 |
| PctI | GAATGC | 1 cut(s) | 190 |
| PdmI | GAANNNNTTC | 2 cut(s) | 290, 531 |
| PfeI | GAWTC | 1 cut(s) | 976 |
| PfoI | TCCNGGA | 2 cut(s) | 36, 243 |
| PkrI | GCNGC | 4 cut(s) | 19, 22, 352, 777 |
| PshBI | ATTAAT | 2 cut(s) | 848, 906 |
| Psp6I | CCWGG | 1 cut(s) | 36 |
| PspGI | CCWGG | 1 cut(s) | 36 |
| PspN4I | GGNNCC | 1 cut(s) | 491 |
| PspPI | GGNCC | 2 cut(s) | 549, 576 |
| PstNI | CAGNNNCTG | 1 cut(s) | 956 |
| PsuI | RGATCY | 2 cut(s) | 106, 489 |
| RsaI | GTAC | 2 cut(s) | 10, 442 |
| RsaNI | GTAC | 2 cut(s) | 9, 441 |
| SaqAI | TTAA | 8 cut(s) | 48, 84, 207, 299, 725, 813, 848, 906 |
| SatI | GCNGC | 4 cut(s) | 18, 21, 351, 776 |
| Sau3AI | GATC | 5 cut(s) | 76, 106, 337, 489, 958 |
| Sau96I | GGNCC | 2 cut(s) | 549, 576 |
| ScrFI | CCNGG | 4 cut(s) | 38, 245, 524, 552 |
| SfaNI | GCATC | 2 cut(s) | 130, 476 |
| SfcI | CTRYAG | 3 cut(s) | 501, 580, 1007 |
| SmlI | CTYRAG | 1 cut(s) | 669 |
| SmoI | CTYRAG | 1 cut(s) | 669 |
| SphI | GCATGC | 1 cut(s) | 203 |
| Sse9I | AATT | 7 cut(s) | 30, 204, 210, 289, 296, 845, 917 |
| SseBI | AGGCCT | 1 cut(s) | 194 |
| SsiI | CCGC | 4 cut(s) | 21, 396, 802, 819 |
| StuI | AGGCCT | 1 cut(s) | 194 |
| StyD4I | CCNGG | 4 cut(s) | 36, 243, 522, 550 |
| StyI | CCWWGG | 4 cut(s) | 189, 261, 354, 750 |
| TaaI | ACNGT | 2 cut(s) | 384, 457 |
| TaiI | ACGT | 3 cut(s) | 369, 610, 967 |
| TaqI | TCGA | 3 cut(s) | 123, 336, 586 |
| TasI | AATT | 7 cut(s) | 30, 204, 210, 289, 296, 845, 917 |
| TauI | GCSGC | 1 cut(s) | 23 |
| TfiI | GAWTC | 1 cut(s) | 976 |
| Tru1I | TTAA | 8 cut(s) | 48, 84, 207, 299, 725, 813, 848, 906 |
| Tru9I | TTAA | 8 cut(s) | 48, 84, 207, 299, 725, 813, 848, 906 |
| TscAI | CASTG | 3 cut(s) | 31, 331, 491 |
| TseI | GCWGC | 3 cut(s) | 17, 350, 775 |
| TspDTI | ATGAA | 1 cut(s) | 942 |
| TspGWI | ACGGA | 2 cut(s) | 530, 777 |
| TspRI | CASTG | 3 cut(s) | 31, 331, 491 |
| VspI | ATTAAT | 2 cut(s) | 848, 906 |
| XapI | RAATTY | 3 cut(s) | 210, 289, 917 |
| XceI | RCATGY | 1 cut(s) | 203 |
| XmnI | GAANNNNTTC | 2 cut(s) | 290, 531 |