Rh2AG558100

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000027
Physical Location & Seq
Reverse (-)
78902930 .. 78936325
33396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG558100.1

Sequence Viewer

Length: 2646 bp
ATGGCAGGTAGAGCTGTCCCCGGTACAAATACTATTCCTGAAGTTCTGAACCTATACAATTATGAAGATTGGAGTATTCGGGTCGAAACCTACTTGATTGCTGAGAGTCTTTGGGACGTTGTCGAAGCCACAGCTGAAACTCCCAATGGTGAAACCAAATATATGTATTGGAGGATGAAGAACGCCAAGGCTCTTCATGCAATTCAAAACTCTTGTAGGACTGATGTATTCCGTTTTATCCGTGACATTAGGATGGCCAAGGATGCGTGGGAGATTTTGGCAAAACGGTTGAAGCCGAAAAGCACAGATATCGAGGGCATGGCAGCCACACTGGTCCCTCGTGTAATGATTAATCTTAAAGCTCTTAACCAAGACACCTATAAGCACTGGAGCTTTTGGGTGAAAACATACTTGCTGGCTGAAGATTTGTGGGATGTAGTCAAAGGCACAAATGAACCTCCAAAACCAGAAGACGGGGAAGGGGAAGCTGAAATCATGGCTTGGCGGAAAAATAATGCCAGAGCCTTGCATGTTATTACCATATTTTGCGGGGAGGATGCTGAATCTTCTATTAGTGACATTGAGAGGGCGAATGATGCCTGGAATACTTTGGCAAAAAAGTTCAAGCCTCCGGAAATTCTAGTAACTCCAGAAGAGAACTCTGAAGTTGAAGTTGACTCGAATGACGACACCGGGTCAAATGATGGTAACGCTGACTTGCAAATAGAAGCGGCTGAAGGATATGAGAAGAGAACCTATGAGCCTCTCTTCGATCAGGTGCGGGCCCGGGATTGGGAAGCTGTAAAGGAATTTATTAAACAATATCCAGAGGCAGTAAGAGCGAAAGATGAGTACCTTGGCATGACAGCTTTTCAACTAGTAGTCTGGTATGAGAACGTGGGAGGTGTAAAACAGTTGCTGCCGTTTGTGAAAAAGAAAGATTTGGAAATACTAGACAATGATGGACAGACTGCTCTCTCTTATGCTATACAAAACACGGATACAGAGGATGCCACCGAAATTGTCAAGTGCATAGTTGAGAAGAACAAGAAACTACTCCTTCGTGTTGTCGATCCTTCCTCCAATACTATTCCACTCCTGAATGCTATGAGTTTGGACAAACCAAAAATGGCTCGATATCTTTATTGTGTTACTCCACTCAAAAAGCTGAAGAGTAGGGACGCCGCTGAGCTAATTTCCACTGGTTTGAGAGTAAAACATTTAGATATTCCATTGGACTTACTACGGCGTTTCCCAAATTTGGTCATTGCTGAAGACCACTCCGGTGAATCCCCTTTAAATGAAATGGCTAGTACGCGTGCTGGATTGTTCTCGAATGCTAGCCAGCTCGGACTATGGAAACGATTGATTTATATCTGTATACACATACCACCTACACCTACACCTATTGGTGACGTTTCCATAGATGTTCCAAACGAAGAAAAAGATCAAGGCAATCGGAAGCATCTCATTCGCAAAGTTACATGTTTCTCTGGACGACTAGTTGCCAATCTACGTCACCTTCCTGGAATCGATGGTATATATCAAATGAAATTGCTCCATGTCCGGACCATCGAAATTCTGGAATGCATCTGTGCAGTGTTAAAGGAGAATAATATCAACTGTATGCAACATAAATTTGTTGTAAAAGCACTCTTCCAAGCAGTAGAACGAGGACACGCTCCATTCATCCGAGGCATACTGCTCCAAAGCATAATGTCGGACAACAGGGATATTCGAAGCTGGCTCCTTGCGATCACTAATGAACATGACAAGACCATATTTCAGTTTGCTGCTGAGCATCGTCAAGAACAAATATTTGACATGATAAATTTTTTTGGTAAAAAAGAAAGAAAAGAAATTGTAGGTAGAAAAGATAAGTTTGGGAATAACTTGCTGCATGTGGTAGGAAAGTTGCCCCCGTTAACAAACATTGATCATATTCGAGGTGCAGCTTTGCAAATGCAGTATGAACTACAATGGTTCAAGAAGGTGGAGCACATGGCAAGTCCCAAAGATCTTAATTGTATAAATTCGGATGGTCGCACACCCCGTGAGGAATTTGCTATGAACCACAGAAATTTGGTAGAGGCAGGAGAAAAGTCAATGAAAGAAACTGCAACTTCTTCTTCGGCACTTGTAGCTGCTCTTATCATTACCATTATGTTCGCTGCAGCAGTGACAGTTCCTGGTGGAACTAATGGGGAGACAGGTATTCCCATATACTCACACACCAAGGCATTTAGGATTTTTATAGTTGCAGATGTTATATCGCTTTGCTCTTCCACAACTTCAGTAATGATATTTTTGGGGATTCTCACGTCACGTTTTGCTGAAGAAGATTTTCTCACATCGTTACCCACAAAATTGATAGTTGGCTTTCTTACCCTTTTTCTATCTATCGGGGCCATGATGATTGCCTTTTCTTCTGCCATTTTCATTATGCTCCCTGAAAAACCATCAATTGTTATTCCATCTATTGTGCTCGCTAGTGTTCCAATTGCTTCATTCCTATGGATGCAATTTCCGTTCCTTCTTGAGATCATTATTTCTACTTATGGATCGAGTGTTCTAGTCTGGTGGGCTCGGAGGATTTACTGGAGGCTTAAATGGTGGGCTTGGAGCATTTACCGGAGACTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

881

Amino Acids

100.11

Weight (kDa)

6.56

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 20 - 42 2e-06 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 29 - 96 1.9e-07 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 135 - 209 2.8e-08 gag-polypeptide of LTR copia-type
PGG PF13962 705 - 814 7.2e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1381
AccII CGCG 1 cut(s) 1318
AccIII TCCGGA 2 cut(s) 631, 1566
AciI CCGC 5 cut(s) 505, 549, 731, 781, 1185
AclWI GGATC 2 cut(s) 1067, 2569
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 9 cut(s) 636, 809, 1258, 1578, 1637, 1831, 2032, 2060, 2080
AcuI CTGAAG 8 cut(s) 60, 441, 684, 756, 1190, 1293, 2277, 2355
AcyI GRCGYC 1 cut(s) 1182
AdeI CACNNNGTG 1 cut(s) 2054
AfaI GTAC 3 cut(s) 25, 854, 1315
AfiI CCNNNNNNNGG 4 cut(s) 473, 792, 793, 1261
AflIII ACRYGT 2 cut(s) 1316, 1484
AgsI TTSAA 6 cut(s) 206, 292, 625, 671, 875, 1987
AhdI GACNNNNNGTC 1 cut(s) 694
AhlI ACTAGT 2 cut(s) 877, 1501
AjiI CACGTC 1 cut(s) 2322
AjnI CCWGG 3 cut(s) 599, 1525, 2188
AleI CACNNNNGTG 1 cut(s) 1284
AloI GAACNNNNNNTCC 2 cut(s) 2553, 2585
Alw21I GWGCWC 2 cut(s) 2001, 2487
Alw26I GTCTC 2 cut(s) 2201, 2629
AlwI GGATC 2 cut(s) 1067, 2569
AlwNI CAGNNNCTG 2 cut(s) 919, 2189
Ama87I CYCGRG 1 cut(s) 786
Aor13HI TCCGGA 2 cut(s) 631, 1566
AoxI GGCC 3 cut(s) 255, 783, 2406
ApaI GGGCCC 1 cut(s) 787
ApeKI GCWGC 8 cut(s) 323, 919, 1793, 1897, 1952, 2144, 2171, 2174
ApoI RAATTY 9 cut(s) 636, 809, 1258, 1578, 1637, 1831, 2032, 2060, 2080
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 2343
AspS9I GGNCC 5 cut(s) 334, 783, 784, 1569, 2406
AsuC2I CCSGG 4 cut(s) 21, 694, 787, 788
AsuHPI GGTGA 5 cut(s) 161, 412, 1298, 1424, 1511
AsuII TTCGAA 1 cut(s) 1738
AsuNHI GCTAGC 1 cut(s) 1340
AvaI CYCGRG 1 cut(s) 786
AvaII GGWCC 2 cut(s) 334, 1569
BaeGI GKGCMC 1 cut(s) 787
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 2 cut(s) 787, 2587
BauI CACGAG 1 cut(s) 339
BbsI GAAGAC 2 cut(s) 477, 1281
Bbv12I GWGCWC 2 cut(s) 2001, 2487
BbvI GCAGC 8 cut(s) 335, 906, 1780, 1884, 1964, 2131, 2158, 2186
BccI CCATC 8 cut(s) 247, 698, 956, 1529, 1580, 2033, 2467, 2482
BceAI ACGGC 2 cut(s) 907, 1262
BcgI CGANNNNNNTGC 4 cut(s) 292, 326, 1454, 1488
BciT130I CCWGG 3 cut(s) 601, 1527, 2190
BciVI GTATCC 1 cut(s) 994
BclI TGATCA 1 cut(s) 1936
BcnI CCSGG 4 cut(s) 21, 694, 787, 788
BcoDI GTCTC 2 cut(s) 2201, 2629
BcuI ACTAGT 2 cut(s) 877, 1501
BfaI CTAG 8 cut(s) 641, 878, 953, 1311, 1341, 1502, 2490, 2573
BfmI CTRYAG 1 cut(s) 2172
BfuI GTATCC 1 cut(s) 994
BglII AGATCT 1 cut(s) 2017
BlpI GCTNAGC 2 cut(s) 1188, 1797
Bme1390I CCNGG 7 cut(s) 21, 601, 694, 787, 788, 1527, 2190
Bme18I GGWCC 2 cut(s) 334, 1569
BmeRI GACNNNNNGTC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 786
BmgBI CACGTC 1 cut(s) 2322
BmgT120I GGNCC 5 cut(s) 334, 783, 784, 1569, 2406
BmiI GGNNCC 4 cut(s) 336, 785, 1748, 2407
BmrFI CCNGG 7 cut(s) 21, 601, 694, 787, 788, 1527, 2190
BmsI GCATC 8 cut(s) 253, 547, 586, 1000, 1474, 1599, 1810, 2508
BmtI GCTAGC 1 cut(s) 1344
BpiI GAAGAC 2 cut(s) 477, 1281
BpmI CTGGAG 3 cut(s) 409, 633, 2620
Bpu1102I GCTNAGC 2 cut(s) 1188, 1797
Bpu14I TTCGAA 1 cut(s) 1738
BpuEI CTTGAG 1 cut(s) 2558
BpuMI CCSGG 4 cut(s) 21, 694, 787, 788
Bsa29I ATCGAT 1 cut(s) 1533
BsaBI GATNNNNATC 1 cut(s) 1373
BsaHI GRCGYC 1 cut(s) 1182
BsaJI CCNNGG 7 cut(s) 19, 186, 258, 786, 856, 1693, 2235
BsaWI WCCGGW 4 cut(s) 631, 1283, 1566, 2631
Bsc4I CCNNNNNNNGG 4 cut(s) 473, 792, 793, 1261
Bse1I ACTGG 4 cut(s) 336, 392, 1207, 2603
Bse3DI GCAATG 1 cut(s) 1266
Bse8I GATNNNNATC 1 cut(s) 1373
BseAI TCCGGA 2 cut(s) 631, 1566
BseBI CCWGG 3 cut(s) 601, 1527, 2190
BseCI ATCGAT 1 cut(s) 1533
BseDI CCNNGG 7 cut(s) 19, 186, 258, 786, 856, 1693, 2235
BseGI GGATG 9 cut(s) 180, 258, 268, 439, 562, 1015, 1689, 2044, 2523
BseJI GATNNNNATC 1 cut(s) 1373
BseLI CCNNNNNNNGG 4 cut(s) 473, 792, 793, 1261
BseMI GCAATG 1 cut(s) 1266
BseMII CTCAG 3 cut(s) 93, 1179, 1788
BseNI ACTGG 4 cut(s) 336, 392, 1207, 2603
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 8 cut(s) 335, 906, 1780, 1884, 1964, 2131, 2158, 2186
BsgI GTGCAG 2 cut(s) 1617, 1971
Bsh1236I CGCG 1 cut(s) 1318
BshFI GGCC 3 cut(s) 257, 785, 2408
BshVI ATCGAT 1 cut(s) 1533
BsiHKAI GWGCWC 2 cut(s) 2001, 2487
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 7 cut(s) 21, 632, 693, 787, 1284, 1567, 2632
BslFI GGGAC 5 cut(s) 2, 128, 320, 1193, 1995
BslI CCNNNNNNNGG 4 cut(s) 473, 792, 793, 1261
BsmAI GTCTC 2 cut(s) 2201, 2629
BsmFI GGGAC 5 cut(s) 2, 128, 320, 1193, 1995
BsmI GAATGC 3 cut(s) 1108, 1342, 1592
BsnI GGCC 3 cut(s) 257, 785, 2408
BsoBI CYCGRG 1 cut(s) 786
Bsp119I TTCGAA 1 cut(s) 1738
Bsp120I GGGCCC 1 cut(s) 783
Bsp1286I GDGCHC 4 cut(s) 787, 2001, 2487, 2587
Bsp13I TCCGGA 2 cut(s) 631, 1566
Bsp143I GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
Bsp1720I GCTNAGC 2 cut(s) 1188, 1797
BspACI CCGC 5 cut(s) 505, 549, 731, 781, 1185
BspANI GGCC 3 cut(s) 257, 785, 2408
BspCNI CTCAG 3 cut(s) 94, 1180, 1789
BspDI ATCGAT 1 cut(s) 1533
BspEI TCCGGA 2 cut(s) 631, 1566
BspFNI CGCG 1 cut(s) 1318
BspLI GGNNCC 4 cut(s) 336, 785, 1748, 2407
BspMAI CTGCAG 1 cut(s) 2176
BspOI GCTAGC 1 cut(s) 1344
BspPI GGATC 2 cut(s) 1067, 2569
BspQI GCTCTTC 2 cut(s) 198, 2287
BspT104I TTCGAA 1 cut(s) 1738
BsrDI GCAATG 1 cut(s) 1266
BsrI ACTGG 4 cut(s) 336, 392, 1207, 2603
BssECI CCNNGG 7 cut(s) 19, 186, 258, 786, 856, 1693, 2235
BssMI GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
BssNAI GTATAC 1 cut(s) 1382
BssNI GRCGYC 1 cut(s) 1182
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 4 cut(s) 186, 258, 856, 2235
Bst1107I GTATAC 1 cut(s) 1382
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 3 cut(s) 601, 1527, 2190
Bst4CI ACNGT 4 cut(s) 288, 915, 1625, 2185
Bst6I CTCTTC 7 cut(s) 198, 648, 743, 773, 1166, 1661, 2287
BstACI GRCGYC 1 cut(s) 1182
BstBI TTCGAA 1 cut(s) 1738
BstC8I GCNNGC 7 cut(s) 417, 783, 1320, 1342, 1346, 1745, 2487
BstDEI CTNAG 3 cut(s) 102, 1188, 1797
BstF5I GGATG 9 cut(s) 180, 258, 268, 439, 562, 1015, 1689, 2044, 2523
BstFNI CGCG 1 cut(s) 1318
BstKTI GATC 8 cut(s) 775, 1075, 1450, 1758, 1939, 2020, 2544, 2564
BstMAI GTCTC 2 cut(s) 2201, 2629
BstMBI GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
BstMWI GCNNNNNNNGC 6 cut(s) 11, 197, 263, 596, 839, 2141
BstNI CCWGG 3 cut(s) 601, 1527, 2190
BstNSI RCATGY 3 cut(s) 533, 1488, 1904
BstSCI CCNGG 7 cut(s) 19, 599, 692, 785, 786, 1525, 2188
BstSFI CTRYAG 1 cut(s) 2172
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 1 cut(s) 1318
BstV1I GCAGC 8 cut(s) 335, 906, 1780, 1884, 1964, 2131, 2158, 2186
BstV2I GAAGAC 2 cut(s) 477, 1281
BstX2I RGATCY 1 cut(s) 2017
BstYI RGATCY 1 cut(s) 2017
BstZ17I GTATAC 1 cut(s) 1382
Bsu15I ATCGAT 1 cut(s) 1533
BsuI GTATCC 1 cut(s) 994
BsuRI GGCC 3 cut(s) 257, 785, 2408
BsuTUI ATCGAT 1 cut(s) 1533
BtrI CACGTC 1 cut(s) 2322
BtsCI GGATG 9 cut(s) 180, 258, 268, 439, 562, 1015, 1689, 2044, 2523
BtsI GCAGTG 2 cut(s) 1605, 2184
BtsIMutI CAGTG 5 cut(s) 329, 385, 1200, 1605, 2184
Cac8I GCNNGC 7 cut(s) 417, 783, 1320, 1342, 1346, 1745, 2487
CaiI CAGNNNCTG 2 cut(s) 919, 2189
Cfr13I GGNCC 5 cut(s) 334, 783, 784, 1569, 2406
Cfr9I CCCGGG 1 cut(s) 786
ClaI ATCGAT 1 cut(s) 1533
CseI GACGC 1 cut(s) 1190
Csp6I GTAC 3 cut(s) 24, 853, 1314
CspCI CAANNNNNGTGG 2 cut(s) 1003, 1038
CviQI GTAC 3 cut(s) 24, 853, 1314
DdeI CTNAG 3 cut(s) 102, 1188, 1797
DpnI GATC 8 cut(s) 774, 1074, 1449, 1757, 1938, 2019, 2543, 2563
DpnII GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
DraI TTTAAA 1 cut(s) 1299
DraIII CACNNNGTG 1 cut(s) 2054
DriI GACNNNNNGTC 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 7 cut(s) 198, 648, 743, 773, 1166, 1661, 2287
Eam1105I GACNNNNNGTC 1 cut(s) 694
EarI CTCTTC 7 cut(s) 198, 648, 743, 773, 1166, 1661, 2287
EciI GGCGGA 1 cut(s) 520
Eco130I CCWWGG 4 cut(s) 186, 258, 856, 2235
Eco24I GRGCYC 2 cut(s) 787, 2587
Eco32I GATATC 2 cut(s) 310, 1139
Eco47I GGWCC 2 cut(s) 334, 1569
Eco57I CTGAAG 8 cut(s) 60, 441, 684, 756, 1190, 1293, 2277, 2355
Eco88I CYCGRG 1 cut(s) 786
EcoRII CCWGG 3 cut(s) 599, 1525, 2188
EcoRV GATATC 2 cut(s) 310, 1139
EcoT14I CCWWGG 4 cut(s) 186, 258, 856, 2235
EcoT22I ATGCAT 1 cut(s) 1592
EcoT38I GRGCYC 2 cut(s) 787, 2587
ErhI CCWWGG 4 cut(s) 186, 258, 856, 2235
FaqI GGGAC 5 cut(s) 2, 128, 320, 1193, 1995
FauI CCCGC 2 cut(s) 542, 774
FbaI TGATCA 1 cut(s) 1936
FblI GTMKAC 1 cut(s) 1381
FokI GGATG 9 cut(s) 187, 265, 275, 446, 569, 1022, 1676, 2051, 2530
FriOI GRGCYC 2 cut(s) 787, 2587
FspBI CTAG 8 cut(s) 641, 878, 953, 1311, 1341, 1502, 2490, 2573
GsuI CTGGAG 3 cut(s) 409, 633, 2620
HaeIII GGCC 3 cut(s) 257, 785, 2408
HapII CCGG 7 cut(s) 21, 632, 693, 787, 1284, 1567, 2632
HgaI GACGC 1 cut(s) 1190
Hin1I GRCGYC 1 cut(s) 1182
HincII GTYRAC 2 cut(s) 676, 1926
HindII GTYRAC 2 cut(s) 676, 1926
HinfI GANTC 6 cut(s) 106, 563, 677, 1289, 1530, 2314
HpaI GTTAAC 1 cut(s) 1926
HpaII CCGG 7 cut(s) 21, 632, 693, 787, 1284, 1567, 2632
HphI GGTGA 5 cut(s) 161, 412, 1298, 1424, 1511
Hpy166II GTNNAC 3 cut(s) 676, 1382, 1926
Hpy188I TCNGA 8 cut(s) 48, 664, 1352, 1461, 1694, 1723, 2038, 2589
Hpy8I GTNNAC 3 cut(s) 676, 1382, 1926
HpyAV CCTTC 7 cut(s) 473, 731, 1070, 1086, 1532, 1984, 2543
HpyCH4III ACNGT 4 cut(s) 288, 915, 1625, 2185
HpyCH4IV ACGT 6 cut(s) 117, 897, 1416, 1516, 2321, 2326
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 197, 263, 596, 839, 2141
HpyF3I CTNAG 3 cut(s) 102, 1188, 1797
HpySE526I ACGT 6 cut(s) 117, 897, 1416, 1516, 2321, 2326
Hsp92I GRCGYC 1 cut(s) 1182
Kpn2I TCCGGA 2 cut(s) 631, 1566
Ksp22I TGATCA 1 cut(s) 1936
KspAI GTTAAC 1 cut(s) 1926
Kzo9I GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
LguI GCTCTTC 2 cut(s) 198, 2287
LmnI GCTCC 8 cut(s) 390, 1563, 1687, 1710, 1752, 1996, 2451, 2622
Lsp1109I GCAGC 8 cut(s) 335, 906, 1780, 1884, 1964, 2131, 2158, 2186
LweI GCATC 8 cut(s) 253, 547, 586, 1000, 1474, 1599, 1810, 2508
MaeI CTAG 8 cut(s) 641, 878, 953, 1311, 1341, 1502, 2490, 2573
MaeII ACGT 6 cut(s) 117, 897, 1416, 1516, 2321, 2326
MalI GATC 8 cut(s) 774, 1074, 1449, 1757, 1938, 2019, 2543, 2563
MboI GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
MfeI CAATTG 2 cut(s) 2463, 2499
MflI RGATCY 1 cut(s) 2017
MhlI GDGCHC 4 cut(s) 787, 2001, 2487, 2587
MlsI TGGCCA 1 cut(s) 257
MluI ACGCGT 1 cut(s) 1316
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 2 cut(s) 115, 671
MmeI TCCRAC 1 cut(s) 1701
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 1592
MroI TCCGGA 2 cut(s) 631, 1566
MroXI GAANNNNTTC 1 cut(s) 2343
MscI TGGCCA 1 cut(s) 257
MseI TTAA 9 cut(s) 351, 357, 366, 816, 1298, 1604, 1925, 2022, 2607
MslI CAYNNNNRTG 3 cut(s) 251, 1284, 2512
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 2 cut(s) 134, 1187
MspI CCGG 7 cut(s) 21, 632, 693, 787, 1284, 1567, 2632
MspR9I CCNGG 7 cut(s) 21, 601, 694, 787, 788, 1527, 2190
MunI CAATTG 2 cut(s) 2463, 2499
Mva1269I GAATGC 3 cut(s) 1108, 1342, 1592
MvaI CCWGG 3 cut(s) 601, 1527, 2190
MvnI CGCG 1 cut(s) 1318
MwoI GCNNNNNNNGC 6 cut(s) 11, 197, 263, 596, 839, 2141
NciI CCSGG 4 cut(s) 21, 694, 787, 788
NdeII GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
NheI GCTAGC 1 cut(s) 1340
NlaIV GGNNCC 4 cut(s) 336, 785, 1748, 2407
NmuCI GTSAC 6 cut(s) 242, 575, 1412, 1517, 2179, 2322
NsiI ATGCAT 1 cut(s) 1592
NspI RCATGY 3 cut(s) 533, 1488, 1904
NspV TTCGAA 1 cut(s) 1738
OliI CACNNNNGTG 1 cut(s) 1284
PciI ACATGT 1 cut(s) 1484
PciSI GCTCTTC 2 cut(s) 198, 2287
PcsI WCGNNNNNNNCGW 1 cut(s) 2050
PctI GAATGC 3 cut(s) 1108, 1342, 1592
PdmI GAANNNNTTC 1 cut(s) 2343
PfeI GAWTC 4 cut(s) 563, 1289, 1530, 2314
PflFI GACNNNGTC 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 1525
PleI GAGTC 2 cut(s) 114, 671
PpsI GAGTC 2 cut(s) 114, 671
PscI ACATGT 1 cut(s) 1484
PshBI ATTAAT 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 599, 1525, 2188
PspGI CCWGG 3 cut(s) 599, 1525, 2188
PspN4I GGNNCC 4 cut(s) 336, 785, 1748, 2407
PspOMI GGGCCC 1 cut(s) 783
PspPI GGNCC 5 cut(s) 334, 783, 784, 1569, 2406
PstI CTGCAG 1 cut(s) 2176
PstNI CAGNNNCTG 2 cut(s) 919, 2189
PsuI RGATCY 1 cut(s) 2017
PsyI GACNNNGTC 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 3 cut(s) 25, 854, 1315
RsaNI GTAC 3 cut(s) 24, 853, 1314
RseI CAYNNNNRTG 3 cut(s) 251, 1284, 2512
SapI GCTCTTC 2 cut(s) 198, 2287
SaqAI TTAA 9 cut(s) 351, 357, 366, 816, 1298, 1604, 1925, 2022, 2607
Sau3AI GATC 8 cut(s) 772, 1072, 1447, 1755, 1936, 2017, 2541, 2561
Sau96I GGNCC 5 cut(s) 334, 783, 784, 1569, 2406
SchI GAGTC 2 cut(s) 115, 671
ScrFI CCNGG 7 cut(s) 21, 601, 694, 787, 788, 1527, 2190
SduI GDGCHC 4 cut(s) 787, 2001, 2487, 2587
SfaNI GCATC 8 cut(s) 253, 547, 586, 1000, 1474, 1599, 1810, 2508
SfcI CTRYAG 1 cut(s) 2172
SfuI TTCGAA 1 cut(s) 1738
SinI GGWCC 2 cut(s) 334, 1569
SmaI CCCGGG 1 cut(s) 788
SmiMI CAYNNNNRTG 3 cut(s) 251, 1284, 2512
SmlI CTYRAG 1 cut(s) 2537
SmoI CTYRAG 1 cut(s) 2537
SpeI ACTAGT 2 cut(s) 877, 1501
SsiI CCGC 5 cut(s) 505, 549, 731, 781, 1185
SspI AATATT 1 cut(s) 1818
SspMI CTAG 8 cut(s) 641, 878, 953, 1311, 1341, 1502, 2490, 2573
StyD4I CCNGG 7 cut(s) 19, 599, 692, 785, 786, 1525, 2188
StyI CCWWGG 4 cut(s) 186, 258, 856, 2235
TaaI ACNGT 4 cut(s) 288, 915, 1625, 2185
TaiI ACGT 6 cut(s) 120, 900, 1419, 1519, 2324, 2329
TauI GCSGC 2 cut(s) 734, 1187
TfiI GAWTC 4 cut(s) 563, 1289, 1530, 2314
Tru1I TTAA 9 cut(s) 351, 357, 366, 816, 1298, 1604, 1925, 2022, 2607
Tru9I TTAA 9 cut(s) 351, 357, 366, 816, 1298, 1604, 1925, 2022, 2607
TscAI CASTG 5 cut(s) 336, 392, 1207, 1605, 2184
TseFI GTSAC 6 cut(s) 242, 575, 1412, 1517, 2179, 2322
TseI GCWGC 8 cut(s) 323, 919, 1793, 1897, 1952, 2144, 2171, 2174
Tsp45I GTSAC 6 cut(s) 242, 575, 1412, 1517, 2179, 2322
TspGWI ACGGA 4 cut(s) 221, 230, 1013, 2517
TspMI CCCGGG 1 cut(s) 786
TspRI CASTG 5 cut(s) 336, 392, 1207, 1605, 2184
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 334, 1569
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 9 cut(s) 636, 809, 1258, 1578, 1637, 1831, 2032, 2060, 2080
XceI RCATGY 3 cut(s) 533, 1488, 1904
XcmI CCANNNNNNNNNTGG 1 cut(s) 1579
XmaI CCCGGG 1 cut(s) 786
XmiI GTMKAC 1 cut(s) 1381
XmnI GAANNNNTTC 1 cut(s) 2343
XspI CTAG 8 cut(s) 641, 878, 953, 1311, 1341, 1502, 2490, 2573
Zsp2I ATGCAT 1 cut(s) 1592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.