protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 207 |
| AccI | GTMKAC | 1 cut(s) | 261 |
| AciI | CCGC | 1 cut(s) | 293 |
| AclI | AACGTT | 1 cut(s) | 141 |
| AcsI | RAATTY | 3 cut(s) | 201, 397, 405 |
| AflIII | ACRYGT | 2 cut(s) | 88, 165 |
| AgsI | TTSAA | 4 cut(s) | 71, 185, 373, 403 |
| AluBI | AGCT | 4 cut(s) | 37, 48, 245, 319 |
| AluI | AGCT | 4 cut(s) | 37, 48, 245, 319 |
| ApeKI | GCWGC | 3 cut(s) | 245, 290, 338 |
| ApoI | RAATTY | 3 cut(s) | 201, 397, 405 |
| BbvI | GCAGC | 3 cut(s) | 232, 302, 350 |
| BceAI | ACGGC | 1 cut(s) | 164 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfmI | CTRYAG | 1 cut(s) | 362 |
| BisI | GCNGC | 3 cut(s) | 246, 291, 339 |
| BlsI | GCNGC | 3 cut(s) | 247, 292, 340 |
| BmsI | GCATC | 1 cut(s) | 339 |
| BsaJI | CCNNGG | 1 cut(s) | 331 |
| Bse3DI | GCAATG | 1 cut(s) | 69 |
| BseDI | CCNNGG | 1 cut(s) | 331 |
| BseMI | GCAATG | 1 cut(s) | 69 |
| BseXI | GCAGC | 3 cut(s) | 232, 302, 350 |
| BsgI | GTGCAG | 1 cut(s) | 357 |
| BsiSI | CCGG | 1 cut(s) | 125 |
| Bsp143I | GATC | 1 cut(s) | 31 |
| BspACI | CCGC | 1 cut(s) | 293 |
| BsrDI | GCAATG | 1 cut(s) | 69 |
| BssECI | CCNNGG | 1 cut(s) | 331 |
| BssMI | GATC | 1 cut(s) | 31 |
| BssT1I | CCWWGG | 1 cut(s) | 331 |
| Bst4CI | ACNGT | 1 cut(s) | 366 |
| Bst6I | CTCTTC | 2 cut(s) | 111, 137 |
| BstC8I | GCNNGC | 1 cut(s) | 281 |
| BstKTI | GATC | 1 cut(s) | 34 |
| BstMBI | GATC | 1 cut(s) | 31 |
| BstNSI | RCATGY | 4 cut(s) | 92, 169, 283, 290 |
| BstSFI | CTRYAG | 1 cut(s) | 362 |
| BstV1I | GCAGC | 3 cut(s) | 232, 302, 350 |
| BtsIMutI | CAGTG | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 1 cut(s) | 281 |
| CviAII | CATG | 5 cut(s) | 8, 89, 166, 280, 287 |
| CviJI | RGCY | 6 cut(s) | 37, 48, 74, 245, 319, 341 |
| CviKI_1 | RGCY | 6 cut(s) | 37, 48, 74, 245, 319, 341 |
| DpnI | GATC | 1 cut(s) | 33 |
| DpnII | GATC | 1 cut(s) | 31 |
| Eam1104I | CTCTTC | 2 cut(s) | 111, 137 |
| EarI | CTCTTC | 2 cut(s) | 111, 137 |
| Eco130I | CCWWGG | 1 cut(s) | 331 |
| EcoT14I | CCWWGG | 1 cut(s) | 331 |
| EcoT22I | ATGCAT | 1 cut(s) | 424 |
| ErhI | CCWWGG | 1 cut(s) | 331 |
| FaeI | CATG | 5 cut(s) | 11, 92, 169, 283, 290 |
| FatI | CATG | 5 cut(s) | 7, 88, 165, 279, 286 |
| FauI | CCCGC | 1 cut(s) | 286 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| FblI | GTMKAC | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 3 cut(s) | 246, 291, 339 |
| Fsp4HI | GCNGC | 3 cut(s) | 246, 291, 339 |
| GluI | GCNGC | 3 cut(s) | 246, 291, 339 |
| HapII | CCGG | 1 cut(s) | 125 |
| Hin1II | CATG | 5 cut(s) | 11, 92, 169, 283, 290 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HinfI | GANTC | 2 cut(s) | 230, 381 |
| HpaII | CCGG | 1 cut(s) | 125 |
| Hpy166II | GTNNAC | 1 cut(s) | 262 |
| Hpy188I | TCNGA | 1 cut(s) | 380 |
| Hpy188III | TCNNGA | 2 cut(s) | 146, 194 |
| Hpy8I | GTNNAC | 1 cut(s) | 262 |
| HpyAV | CCTTC | 1 cut(s) | 291 |
| HpyCH4III | ACNGT | 1 cut(s) | 366 |
| HpyCH4IV | ACGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 7 cut(s) | 55, 290, 314, 338, 352, 422, 435 |
| HpySE526I | ACGT | 1 cut(s) | 141 |
| Hsp92II | CATG | 5 cut(s) | 11, 92, 169, 283, 290 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 1 cut(s) | 31 |
| LpnPI | CCDG | 2 cut(s) | 138, 219 |
| Lsp1109I | GCAGC | 3 cut(s) | 232, 302, 350 |
| LweI | GCATC | 1 cut(s) | 339 |
| MaeII | ACGT | 1 cut(s) | 141 |
| MaeIII | GTNAC | 1 cut(s) | 10 |
| MalI | GATC | 1 cut(s) | 33 |
| MboI | GATC | 1 cut(s) | 31 |
| MboII | GAAGA | 3 cut(s) | 98, 124, 209 |
| MluCI | AATT | 4 cut(s) | 201, 397, 405, 427 |
| MnlI | CCTC | 1 cut(s) | 77 |
| Mph1103I | ATGCAT | 1 cut(s) | 424 |
| MspA1I | CMGCKG | 1 cut(s) | 293 |
| MspI | CCGG | 1 cut(s) | 125 |
| NdeII | GATC | 1 cut(s) | 31 |
| NlaIII | CATG | 5 cut(s) | 11, 92, 169, 283, 290 |
| NsiI | ATGCAT | 1 cut(s) | 424 |
| NspI | RCATGY | 4 cut(s) | 92, 169, 283, 290 |
| PaeI | GCATGC | 1 cut(s) | 283 |
| PciI | ACATGT | 2 cut(s) | 88, 165 |
| PfeI | GAWTC | 2 cut(s) | 230, 381 |
| PkrI | GCNGC | 3 cut(s) | 247, 292, 340 |
| PscI | ACATGT | 2 cut(s) | 88, 165 |
| PsiI | TTATAA | 1 cut(s) | 207 |
| Psp1406I | AACGTT | 1 cut(s) | 141 |
| SatI | GCNGC | 3 cut(s) | 246, 291, 339 |
| Sau3AI | GATC | 1 cut(s) | 31 |
| SetI | ASST | 8 cut(s) | 39, 50, 144, 213, 247, 321, 337, 378 |
| SfaNI | GCATC | 1 cut(s) | 339 |
| SfcI | CTRYAG | 1 cut(s) | 362 |
| SphI | GCATGC | 1 cut(s) | 283 |
| Sse9I | AATT | 4 cut(s) | 201, 397, 405, 427 |
| SsiI | CCGC | 1 cut(s) | 293 |
| StyI | CCWWGG | 1 cut(s) | 331 |
| TaaI | ACNGT | 1 cut(s) | 366 |
| TaiI | ACGT | 1 cut(s) | 144 |
| TasI | AATT | 4 cut(s) | 201, 397, 405, 427 |
| TfiI | GAWTC | 2 cut(s) | 230, 381 |
| TscAI | CASTG | 1 cut(s) | 371 |
| TseI | GCWGC | 3 cut(s) | 245, 290, 338 |
| TspRI | CASTG | 1 cut(s) | 371 |
| XapI | RAATTY | 3 cut(s) | 201, 397, 405 |
| XceI | RCATGY | 4 cut(s) | 92, 169, 283, 290 |
| XmiI | GTMKAC | 1 cut(s) | 261 |
| Zsp2I | ATGCAT | 1 cut(s) | 424 |