OTU-like cysteine protease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 163 |
| AfaI | GTAC | 1 cut(s) | 275 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AgsI | TTSAA | 3 cut(s) | 26, 229, 343 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 38 |
| AluBI | AGCT | 1 cut(s) | 307 |
| AluI | AGCT | 1 cut(s) | 307 |
| Alw26I | GTCTC | 3 cut(s) | 39, 55, 146 |
| AlwI | GGATC | 1 cut(s) | 163 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| AoxI | GGCC | 2 cut(s) | 95, 99 |
| ApeKI | GCWGC | 1 cut(s) | 221 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 21 |
| AspLEI | GCGC | 1 cut(s) | 370 |
| AspS9I | GGNCC | 1 cut(s) | 95 |
| AsuC2I | CCSGG | 1 cut(s) | 94 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| BbvI | GCAGC | 1 cut(s) | 233 |
| BccI | CCATC | 2 cut(s) | 323, 343 |
| BcnI | CCSGG | 1 cut(s) | 94 |
| BcoDI | GTCTC | 3 cut(s) | 39, 55, 146 |
| BfaI | CTAG | 1 cut(s) | 302 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 98 |
| BisI | GCNGC | 1 cut(s) | 222 |
| BlsI | GCNGC | 1 cut(s) | 223 |
| Bme1390I | CCNGG | 1 cut(s) | 94 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgT120I | GGNCC | 1 cut(s) | 95 |
| BmiI | GGNNCC | 1 cut(s) | 354 |
| BmrFI | CCNGG | 1 cut(s) | 94 |
| BmsI | GCATC | 2 cut(s) | 79, 151 |
| BpuEI | CTTGAG | 1 cut(s) | 21 |
| BpuMI | CCSGG | 1 cut(s) | 94 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaAI | YACGTR | 2 cut(s) | 106, 217 |
| BsaJI | CCNNGG | 1 cut(s) | 261 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 6, 36 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| Bse118I | RCCGGY | 1 cut(s) | 97 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BseDI | CCNNGG | 1 cut(s) | 261 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseXI | GCAGC | 1 cut(s) | 233 |
| BshFI | GGCC | 2 cut(s) | 97, 101 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BsiSI | CCGG | 2 cut(s) | 93, 98 |
| BslFI | GGGAC | 1 cut(s) | 344 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsmAI | GTCTC | 3 cut(s) | 39, 55, 146 |
| BsmBI | CGTCTC | 1 cut(s) | 39 |
| BsmFI | GGGAC | 1 cut(s) | 344 |
| BsnI | GGCC | 2 cut(s) | 97, 101 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp143I | GATC | 1 cut(s) | 155 |
| BspANI | GGCC | 2 cut(s) | 97, 101 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BspLI | GGNNCC | 1 cut(s) | 354 |
| BspPI | GGATC | 1 cut(s) | 163 |
| BsrFI | RCCGGY | 1 cut(s) | 97 |
| BssAI | RCCGGY | 1 cut(s) | 97 |
| BssECI | CCNNGG | 1 cut(s) | 261 |
| BssMI | GATC | 1 cut(s) | 155 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstBAI | YACGTR | 2 cut(s) | 106, 217 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 309 |
| BstDEI | CTNAG | 1 cut(s) | 145 |
| BstHHI | GCGC | 1 cut(s) | 370 |
| BstKTI | GATC | 1 cut(s) | 158 |
| BstMAI | GTCTC | 3 cut(s) | 39, 55, 146 |
| BstMBI | GATC | 1 cut(s) | 155 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 98, 170, 179 |
| BstSCI | CCNGG | 1 cut(s) | 92 |
| BstV1I | GCAGC | 1 cut(s) | 233 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| BsuRI | GGCC | 2 cut(s) | 97, 101 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 309 |
| CfoI | GCGC | 1 cut(s) | 370 |
| Cfr10I | RCCGGY | 1 cut(s) | 97 |
| Cfr13I | GGNCC | 1 cut(s) | 95 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| Csp6I | GTAC | 1 cut(s) | 274 |
| CviAII | CATG | 1 cut(s) | 113 |
| CviJI | RGCY | 4 cut(s) | 97, 101, 307, 311 |
| CviKI_1 | RGCY | 4 cut(s) | 97, 101, 307, 311 |
| CviQI | GTAC | 1 cut(s) | 274 |
| DdeI | CTNAG | 1 cut(s) | 145 |
| DpnI | GATC | 1 cut(s) | 157 |
| DpnII | GATC | 1 cut(s) | 155 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| Esp3I | CGTCTC | 1 cut(s) | 39 |
| FaeI | CATG | 1 cut(s) | 116 |
| FaiI | YATR | 7 cut(s) | 114, 193, 279, 295, 321, 374, 376 |
| FaqI | GGGAC | 1 cut(s) | 344 |
| FatI | CATG | 1 cut(s) | 112 |
| Fnu4HI | GCNGC | 1 cut(s) | 222 |
| FseI | GGCCGGCC | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 222 |
| FspBI | CTAG | 1 cut(s) | 302 |
| GlaI | GCGC | 1 cut(s) | 369 |
| GluI | GCNGC | 1 cut(s) | 222 |
| HaeIII | GGCC | 2 cut(s) | 97, 101 |
| HapII | CCGG | 2 cut(s) | 93, 98 |
| HhaI | GCGC | 1 cut(s) | 370 |
| Hin1II | CATG | 1 cut(s) | 116 |
| Hin6I | GCGC | 1 cut(s) | 368 |
| HinP1I | GCGC | 1 cut(s) | 368 |
| HinfI | GANTC | 1 cut(s) | 109 |
| HpaII | CCGG | 2 cut(s) | 93, 98 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 3 cut(s) | 32, 105, 216 |
| HpyCH4V | TGCA | 1 cut(s) | 131 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 98, 170, 179 |
| HpyF3I | CTNAG | 1 cut(s) | 145 |
| HpySE526I | ACGT | 3 cut(s) | 32, 105, 216 |
| Hsp92II | CATG | 1 cut(s) | 116 |
| HspAI | GCGC | 1 cut(s) | 368 |
| KroI | GCCGGC | 1 cut(s) | 97 |
| KroNI | GCCGGC | 1 cut(s) | 99 |
| Kzo9I | GATC | 1 cut(s) | 155 |
| LpnPI | CCDG | 4 cut(s) | 106, 111, 293, 359 |
| Lsp1109I | GCAGC | 1 cut(s) | 233 |
| LweI | GCATC | 2 cut(s) | 79, 151 |
| MaeI | CTAG | 1 cut(s) | 302 |
| MaeII | ACGT | 3 cut(s) | 32, 105, 216 |
| MalI | GATC | 1 cut(s) | 157 |
| MboI | GATC | 1 cut(s) | 155 |
| MboII | GAAGA | 2 cut(s) | 62, 203 |
| MluCI | AATT | 1 cut(s) | 254 |
| MnlI | CCTC | 2 cut(s) | 256, 328 |
| MroNI | GCCGGC | 1 cut(s) | 97 |
| MroXI | GAANNNNTTC | 1 cut(s) | 21 |
| MseI | TTAA | 1 cut(s) | 176 |
| MspI | CCGG | 2 cut(s) | 93, 98 |
| MspR9I | CCNGG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 98, 170, 179 |
| NaeI | GCCGGC | 1 cut(s) | 99 |
| NciI | CCSGG | 1 cut(s) | 94 |
| NdeII | GATC | 1 cut(s) | 155 |
| NgoMIV | GCCGGC | 1 cut(s) | 97 |
| NlaIII | CATG | 1 cut(s) | 116 |
| NlaIV | GGNNCC | 1 cut(s) | 354 |
| PdiI | GCCGGC | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 21 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PkrI | GCNGC | 1 cut(s) | 223 |
| Ppu21I | YACGTR | 2 cut(s) | 106, 217 |
| PspN4I | GGNNCC | 1 cut(s) | 354 |
| PspPI | GGNCC | 1 cut(s) | 95 |
| RigI | GGCCGGCC | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 275 |
| RsaNI | GTAC | 1 cut(s) | 274 |
| SaqAI | TTAA | 1 cut(s) | 176 |
| SatI | GCNGC | 1 cut(s) | 222 |
| Sau3AI | GATC | 1 cut(s) | 155 |
| Sau96I | GGNCC | 1 cut(s) | 95 |
| ScrFI | CCNGG | 1 cut(s) | 94 |
| SetI | ASST | 5 cut(s) | 10, 35, 108, 219, 309 |
| SfaNI | GCATC | 2 cut(s) | 79, 151 |
| SmlI | CTYRAG | 1 cut(s) | 36 |
| SmoI | CTYRAG | 1 cut(s) | 36 |
| Sse9I | AATT | 1 cut(s) | 254 |
| SspMI | CTAG | 1 cut(s) | 302 |
| StyD4I | CCNGG | 1 cut(s) | 92 |
| TaiI | ACGT | 3 cut(s) | 35, 108, 219 |
| TaqI | TCGA | 2 cut(s) | 42, 87 |
| TasI | AATT | 1 cut(s) | 254 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| Tru1I | TTAA | 1 cut(s) | 176 |
| Tru9I | TTAA | 1 cut(s) | 176 |
| TseI | GCWGC | 1 cut(s) | 221 |
| TspDTI | ATGAA | 1 cut(s) | 330 |
| XmnI | GAANNNNTTC | 1 cut(s) | 21 |
| XspI | CTAG | 1 cut(s) | 302 |