protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 10 |
| AccB1I | GGYRCC | 1 cut(s) | 187 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 837 |
| AccII | CGCG | 1 cut(s) | 568 |
| AciI | CCGC | 1 cut(s) | 414 |
| AclWI | GGATC | 1 cut(s) | 716 |
| AcuI | CTGAAG | 1 cut(s) | 519 |
| AcyI | GRCGYC | 3 cut(s) | 138, 188, 213 |
| AfaI | GTAC | 1 cut(s) | 376 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 837 |
| AgsI | TTSAA | 2 cut(s) | 203, 528 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 297 |
| AjnI | CCWGG | 2 cut(s) | 430, 808 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 688, 720 |
| AluBI | AGCT | 2 cut(s) | 29, 220 |
| AluI | AGCT | 2 cut(s) | 29, 220 |
| AlwI | GGATC | 1 cut(s) | 716 |
| AoxI | GGCC | 3 cut(s) | 114, 619, 806 |
| ApeKI | GCWGC | 1 cut(s) | 416 |
| AseI | ATTAAT | 1 cut(s) | 329 |
| AspLEI | GCGC | 1 cut(s) | 190 |
| AspS9I | GGNCC | 2 cut(s) | 114, 806 |
| BanI | GGYRCC | 1 cut(s) | 187 |
| BauI | CACGAG | 1 cut(s) | 320 |
| BbsI | GAAGAC | 2 cut(s) | 516, 585 |
| BbvI | GCAGC | 1 cut(s) | 428 |
| BccI | CCATC | 3 cut(s) | 72, 142, 236 |
| BceAI | ACGGC | 1 cut(s) | 378 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 206, 240 |
| BciT130I | CCWGG | 2 cut(s) | 432, 810 |
| BfaI | CTAG | 1 cut(s) | 603 |
| BfoI | RGCGCY | 1 cut(s) | 191 |
| BisI | GCNGC | 2 cut(s) | 414, 417 |
| BlsI | GCNGC | 2 cut(s) | 415, 418 |
| Bme1390I | CCNGG | 2 cut(s) | 432, 810 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 297 |
| BmgT120I | GGNCC | 2 cut(s) | 114, 806 |
| BmiI | GGNNCC | 3 cut(s) | 59, 189, 429 |
| BmrFI | CCNGG | 2 cut(s) | 432, 810 |
| BmsI | GCATC | 1 cut(s) | 465 |
| BpiI | GAAGAC | 2 cut(s) | 516, 585 |
| BpuEI | CTTGAG | 1 cut(s) | 193 |
| BsaBI | GATNNNNATC | 1 cut(s) | 128 |
| BsaHI | GRCGYC | 3 cut(s) | 138, 188, 213 |
| BsaJI | CCNNGG | 1 cut(s) | 836 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 837 |
| Bse1I | ACTGG | 1 cut(s) | 197 |
| Bse3DI | GCAATG | 2 cut(s) | 393, 596 |
| Bse8I | GATNNNNATC | 1 cut(s) | 128 |
| BseBI | CCWGG | 2 cut(s) | 432, 810 |
| BseDI | CCNNGG | 1 cut(s) | 836 |
| BseGI | GGATG | 1 cut(s) | 456 |
| BseJI | GATNNNNATC | 1 cut(s) | 128 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 837 |
| BseMI | GCAATG | 2 cut(s) | 393, 596 |
| BseMII | CTCAG | 2 cut(s) | 23, 710 |
| BseNI | ACTGG | 1 cut(s) | 197 |
| BseXI | GCAGC | 1 cut(s) | 428 |
| Bsh1236I | CGCG | 1 cut(s) | 568 |
| BshFI | GGCC | 3 cut(s) | 116, 621, 808 |
| BshNI | GGYRCC | 1 cut(s) | 187 |
| BslFI | GGGAC | 1 cut(s) | 567 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 837 |
| BsmFI | GGGAC | 1 cut(s) | 567 |
| BsnI | GGCC | 3 cut(s) | 116, 621, 808 |
| Bsp1407I | TGTACA | 1 cut(s) | 374 |
| Bsp143I | GATC | 4 cut(s) | 35, 123, 657, 708 |
| BspACI | CCGC | 1 cut(s) | 414 |
| BspANI | GGCC | 3 cut(s) | 116, 621, 808 |
| BspCNI | CTCAG | 2 cut(s) | 24, 711 |
| BspFNI | CGCG | 1 cut(s) | 568 |
| BspLI | GGNNCC | 3 cut(s) | 59, 189, 429 |
| BspPI | GGATC | 1 cut(s) | 716 |
| BspT107I | GGYRCC | 1 cut(s) | 187 |
| BsrDI | GCAATG | 2 cut(s) | 393, 596 |
| BsrGI | TGTACA | 1 cut(s) | 374 |
| BsrI | ACTGG | 1 cut(s) | 197 |
| BssECI | CCNNGG | 1 cut(s) | 836 |
| BssMI | GATC | 4 cut(s) | 35, 123, 657, 708 |
| BssNI | GRCGYC | 3 cut(s) | 138, 188, 213 |
| BssSI | CACGAG | 1 cut(s) | 320 |
| BssT1I | CCWWGG | 1 cut(s) | 836 |
| Bst2BI | CACGAG | 1 cut(s) | 320 |
| Bst2UI | CCWGG | 2 cut(s) | 432, 810 |
| Bst4CI | ACNGT | 2 cut(s) | 379, 427 |
| BstACI | GRCGYC | 3 cut(s) | 138, 188, 213 |
| BstAUI | TGTACA | 1 cut(s) | 374 |
| BstDEI | CTNAG | 3 cut(s) | 32, 719, 782 |
| BstF5I | GGATG | 1 cut(s) | 456 |
| BstFNI | CGCG | 1 cut(s) | 568 |
| BstH2I | RGCGCY | 1 cut(s) | 191 |
| BstHHI | GCGC | 1 cut(s) | 190 |
| BstKTI | GATC | 4 cut(s) | 38, 126, 660, 711 |
| BstMBI | GATC | 4 cut(s) | 35, 123, 657, 708 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 57, 755 |
| BstNI | CCWGG | 2 cut(s) | 432, 810 |
| BstSCI | CCNGG | 2 cut(s) | 430, 808 |
| BstUI | CGCG | 1 cut(s) | 568 |
| BstV1I | GCAGC | 1 cut(s) | 428 |
| BstV2I | GAAGAC | 2 cut(s) | 516, 585 |
| BsuRI | GGCC | 3 cut(s) | 116, 621, 808 |
| BtgZI | GCGATG | 1 cut(s) | 549 |
| BtsCI | GGATG | 1 cut(s) | 456 |
| BtsI | GCAGTG | 1 cut(s) | 213 |
| BtsIMutI | CAGTG | 2 cut(s) | 213, 543 |
| CfoI | GCGC | 1 cut(s) | 190 |
| Cfr13I | GGNCC | 2 cut(s) | 114, 806 |
| CseI | GACGC | 2 cut(s) | 127, 202 |
| Csp6I | GTAC | 1 cut(s) | 375 |
| CviAII | CATG | 5 cut(s) | 39, 403, 463, 652, 692 |
| CviJI | RGCY | 7 cut(s) | 29, 60, 116, 220, 296, 621, 808 |
| CviKI_1 | RGCY | 7 cut(s) | 29, 60, 116, 220, 296, 621, 808 |
| CviQI | GTAC | 1 cut(s) | 375 |
| DdeI | CTNAG | 3 cut(s) | 32, 719, 782 |
| DinI | GGCGCC | 1 cut(s) | 189 |
| DpnI | GATC | 4 cut(s) | 37, 125, 659, 710 |
| DpnII | GATC | 4 cut(s) | 35, 123, 657, 708 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 10 |
| DriI | GACNNNNNGTC | 1 cut(s) | 297 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 10 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 1 cut(s) | 836 |
| Eco57I | CTGAAG | 1 cut(s) | 519 |
| EcoRII | CCWGG | 2 cut(s) | 430, 808 |
| EcoT14I | CCWWGG | 1 cut(s) | 836 |
| EgeI | GGCGCC | 1 cut(s) | 189 |
| EheI | GGCGCC | 1 cut(s) | 189 |
| ErhI | CCWWGG | 1 cut(s) | 836 |
| FaeI | CATG | 5 cut(s) | 42, 406, 466, 655, 695 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 688, 720 |
| FaqI | GGGAC | 1 cut(s) | 567 |
| FatI | CATG | 5 cut(s) | 38, 402, 462, 651, 691 |
| Fnu4HI | GCNGC | 2 cut(s) | 414, 417 |
| FokI | GGATG | 1 cut(s) | 443 |
| Fsp4HI | GCNGC | 2 cut(s) | 414, 417 |
| FspBI | CTAG | 1 cut(s) | 603 |
| GlaI | GCGC | 1 cut(s) | 189 |
| GluI | GCNGC | 2 cut(s) | 414, 417 |
| HaeII | RGCGCY | 1 cut(s) | 191 |
| HaeIII | GGCC | 3 cut(s) | 116, 621, 808 |
| HgaI | GACGC | 2 cut(s) | 127, 202 |
| HhaI | GCGC | 1 cut(s) | 190 |
| Hin1I | GRCGYC | 3 cut(s) | 138, 188, 213 |
| Hin1II | CATG | 5 cut(s) | 42, 406, 466, 655, 695 |
| Hin6I | GCGC | 1 cut(s) | 188 |
| HinP1I | GCGC | 1 cut(s) | 188 |
| HincII | GTYRAC | 4 cut(s) | 15, 76, 291, 302 |
| HindII | GTYRAC | 4 cut(s) | 15, 76, 291, 302 |
| HinfI | GANTC | 6 cut(s) | 11, 129, 164, 193, 316, 555 |
| Hpy166II | GTNNAC | 5 cut(s) | 15, 76, 291, 302, 423 |
| Hpy188I | TCNGA | 8 cut(s) | 10, 33, 57, 102, 128, 134, 505, 720 |
| Hpy188III | TCNNGA | 3 cut(s) | 172, 257, 320 |
| Hpy8I | GTNNAC | 5 cut(s) | 15, 76, 291, 302, 423 |
| Hpy99I | CGWCG | 3 cut(s) | 143, 218, 236 |
| HpyAV | CCTTC | 2 cut(s) | 328, 788 |
| HpyCH4III | ACNGT | 2 cut(s) | 379, 427 |
| HpyCH4IV | ACGT | 1 cut(s) | 265 |
| HpyCH4V | TGCA | 3 cut(s) | 575, 734, 766 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 57, 755 |
| HpyF3I | CTNAG | 3 cut(s) | 32, 719, 782 |
| HpySE526I | ACGT | 1 cut(s) | 265 |
| Hsp92I | GRCGYC | 3 cut(s) | 138, 188, 213 |
| Hsp92II | CATG | 5 cut(s) | 42, 406, 466, 655, 695 |
| HspAI | GCGC | 1 cut(s) | 188 |
| KasI | GGCGCC | 1 cut(s) | 187 |
| Kzo9I | GATC | 4 cut(s) | 35, 123, 657, 708 |
| LmnI | GCTCC | 1 cut(s) | 57 |
| LpnPI | CCDG | 9 cut(s) | 92, 210, 270, 417, 438, 444, 458, 795, 822 |
| Lsp1109I | GCAGC | 1 cut(s) | 428 |
| LweI | GCATC | 1 cut(s) | 465 |
| MaeI | CTAG | 1 cut(s) | 603 |
| MaeII | ACGT | 1 cut(s) | 265 |
| MaeIII | GTNAC | 3 cut(s) | 266, 317, 625 |
| MalI | GATC | 4 cut(s) | 37, 125, 659, 710 |
| MboI | GATC | 4 cut(s) | 35, 123, 657, 708 |
| MboII | GAAGA | 4 cut(s) | 516, 590, 660, 708 |
| MluCI | AATT | 5 cut(s) | 82, 103, 326, 479, 767 |
| Mly113I | GGCGCC | 1 cut(s) | 188 |
| MlyI | GAGTC | 4 cut(s) | 20, 202, 325, 549 |
| MnlI | CCTC | 7 cut(s) | 71, 81, 128, 264, 331, 760, 785 |
| MseI | TTAA | 2 cut(s) | 329, 844 |
| MslI | CAYNNNNRTG | 3 cut(s) | 461, 653, 757 |
| MspR9I | CCNGG | 2 cut(s) | 432, 810 |
| MvaI | CCWGG | 2 cut(s) | 432, 810 |
| MvnI | CGCG | 1 cut(s) | 568 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 57, 755 |
| NarI | GGCGCC | 1 cut(s) | 188 |
| NdeII | GATC | 4 cut(s) | 35, 123, 657, 708 |
| NlaIII | CATG | 5 cut(s) | 42, 406, 466, 655, 695 |
| NlaIV | GGNNCC | 3 cut(s) | 59, 189, 429 |
| NmeAIII | GCCGAG | 1 cut(s) | 216 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PfeI | GAWTC | 2 cut(s) | 129, 164 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 837 |
| PkrI | GCNGC | 2 cut(s) | 415, 418 |
| PleI | GAGTC | 4 cut(s) | 19, 201, 324, 549 |
| PluTI | GGCGCC | 1 cut(s) | 191 |
| PpsI | GAGTC | 4 cut(s) | 19, 201, 324, 549 |
| PshBI | ATTAAT | 1 cut(s) | 329 |
| Psp6I | CCWGG | 2 cut(s) | 430, 808 |
| PspGI | CCWGG | 2 cut(s) | 430, 808 |
| PspN4I | GGNNCC | 3 cut(s) | 59, 189, 429 |
| PspPI | GGNCC | 2 cut(s) | 114, 806 |
| RsaI | GTAC | 1 cut(s) | 376 |
| RsaNI | GTAC | 1 cut(s) | 375 |
| RseI | CAYNNNNRTG | 3 cut(s) | 461, 653, 757 |
| SaqAI | TTAA | 2 cut(s) | 329, 844 |
| SatI | GCNGC | 2 cut(s) | 414, 417 |
| Sau3AI | GATC | 4 cut(s) | 35, 123, 657, 708 |
| Sau96I | GGNCC | 2 cut(s) | 114, 806 |
| SchI | GAGTC | 4 cut(s) | 20, 202, 325, 549 |
| ScrFI | CCNGG | 2 cut(s) | 432, 810 |
| SetI | ASST | 6 cut(s) | 31, 222, 256, 268, 388, 838 |
| SfaNI | GCATC | 1 cut(s) | 465 |
| SfoI | GGCGCC | 1 cut(s) | 189 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 461, 653, 757 |
| SmlI | CTYRAG | 1 cut(s) | 172 |
| SmoI | CTYRAG | 1 cut(s) | 172 |
| Sse9I | AATT | 5 cut(s) | 82, 103, 326, 479, 767 |
| SsiI | CCGC | 1 cut(s) | 414 |
| SspDI | GGCGCC | 1 cut(s) | 187 |
| SspI | AATATT | 1 cut(s) | 816 |
| SspMI | CTAG | 1 cut(s) | 603 |
| StyD4I | CCNGG | 2 cut(s) | 430, 808 |
| StyI | CCWWGG | 1 cut(s) | 836 |
| TaaI | ACNGT | 2 cut(s) | 379, 427 |
| TaiI | ACGT | 1 cut(s) | 268 |
| TaqI | TCGA | 4 cut(s) | 122, 156, 216, 234 |
| TasI | AATT | 5 cut(s) | 82, 103, 326, 479, 767 |
| TatI | WGTACW | 1 cut(s) | 374 |
| TauI | GCSGC | 1 cut(s) | 416 |
| TfiI | GAWTC | 2 cut(s) | 129, 164 |
| Tru1I | TTAA | 2 cut(s) | 329, 844 |
| Tru9I | TTAA | 2 cut(s) | 329, 844 |
| TscAI | CASTG | 2 cut(s) | 213, 543 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 416 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 6 cut(s) | 347, 368, 457, 625, 680, 781 |
| TspRI | CASTG | 2 cut(s) | 213, 543 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 837 |
| VspI | ATTAAT | 1 cut(s) | 329 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 235 |
| XspI | CTAG | 1 cut(s) | 603 |