protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 868 |
| Acc36I | ACCTGC | 1 cut(s) | 868 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 740 |
| AciI | CCGC | 2 cut(s) | 9, 517 |
| AclWI | GGATC | 2 cut(s) | 1024, 1037 |
| AcsI | RAATTY | 2 cut(s) | 165, 414 |
| AcuI | CTGAAG | 1 cut(s) | 824 |
| AfaI | GTAC | 4 cut(s) | 370, 511, 655, 747 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 148, 317, 593, 740, 817 |
| AflII | CTTAAG | 1 cut(s) | 392 |
| AgsI | TTSAA | 3 cut(s) | 1024, 1078, 1136 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 119, 151 |
| AluBI | AGCT | 9 cut(s) | 31, 97, 219, 397, 785, 845, 983, 1016, 1151 |
| AluI | AGCT | 9 cut(s) | 31, 97, 219, 397, 785, 845, 983, 1016, 1151 |
| Alw21I | GWGCWC | 1 cut(s) | 675 |
| Alw26I | GTCTC | 4 cut(s) | 416, 596, 804, 1060 |
| Alw44I | GTGCAC | 1 cut(s) | 671 |
| AlwI | GGATC | 2 cut(s) | 1024, 1037 |
| AoxI | GGCC | 4 cut(s) | 139, 727, 852, 973 |
| ApaLI | GTGCAC | 1 cut(s) | 671 |
| ApoI | RAATTY | 2 cut(s) | 165, 414 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 131, 285 |
| AspA2I | CCTAGG | 2 cut(s) | 956, 976 |
| AspS9I | GGNCC | 2 cut(s) | 808, 853 |
| AsuC2I | CCSGG | 2 cut(s) | 274, 819 |
| AsuHPI | GGTGA | 7 cut(s) | 224, 359, 647, 851, 934, 1175, 1190 |
| AsuII | TTCGAA | 2 cut(s) | 71, 197 |
| AvaII | GGWCC | 1 cut(s) | 808 |
| AvrII | CCTAGG | 2 cut(s) | 956, 976 |
| AxyI | CCTNAGG | 1 cut(s) | 835 |
| BaeGI | GKGCMC | 1 cut(s) | 675 |
| BamHI | GGATCC | 1 cut(s) | 1029 |
| Bbv12I | GWGCWC | 1 cut(s) | 675 |
| BccI | CCATC | 9 cut(s) | 118, 298, 368, 557, 686, 742, 844, 1087, 1133 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BclI | TGATCA | 1 cut(s) | 349 |
| BcnI | CCSGG | 2 cut(s) | 274, 819 |
| BcoDI | GTCTC | 4 cut(s) | 416, 596, 804, 1060 |
| BfaI | CTAG | 4 cut(s) | 57, 782, 957, 977 |
| BfrI | CTTAAG | 1 cut(s) | 392 |
| BfuAI | ACCTGC | 1 cut(s) | 868 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 305 |
| BisI | GCNGC | 1 cut(s) | 517 |
| BlnI | CCTAGG | 2 cut(s) | 956, 976 |
| BlsI | GCNGC | 1 cut(s) | 518 |
| Bme1390I | CCNGG | 3 cut(s) | 274, 312, 819 |
| Bme18I | GGWCC | 1 cut(s) | 808 |
| BmgT120I | GGNCC | 2 cut(s) | 808, 853 |
| BmiI | GGNNCC | 4 cut(s) | 309, 478, 855, 1031 |
| BmrFI | CCNGG | 3 cut(s) | 274, 312, 819 |
| BmsI | GCATC | 3 cut(s) | 259, 1045, 1127 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 705, 737 |
| BpmI | CTGGAG | 3 cut(s) | 67, 495, 732 |
| Bpu14I | TTCGAA | 2 cut(s) | 71, 197 |
| BpuMI | CCSGG | 2 cut(s) | 274, 819 |
| BsaAI | YACGTR | 1 cut(s) | 243 |
| BsaBI | GATNNNNATC | 1 cut(s) | 528 |
| BsaI | GGTCTC | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 3 cut(s) | 311, 956, 976 |
| BsaWI | WCCGGW | 2 cut(s) | 209, 410 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 148, 317, 593, 740, 817 |
| Bse1I | ACTGG | 2 cut(s) | 738, 1180 |
| Bse21I | CCTNAGG | 1 cut(s) | 835 |
| Bse3DI | GCAATG | 1 cut(s) | 104 |
| Bse8I | GATNNNNATC | 1 cut(s) | 528 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseDI | CCNNGG | 3 cut(s) | 311, 956, 976 |
| BseGI | GGATG | 4 cut(s) | 256, 734, 1098, 1118 |
| BseJI | GATNNNNATC | 1 cut(s) | 528 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 148, 317, 593, 740, 817 |
| BseMI | GCAATG | 1 cut(s) | 104 |
| BseMII | CTCAG | 1 cut(s) | 185 |
| BseNI | ACTGG | 2 cut(s) | 738, 1180 |
| BseSI | GKGCMC | 1 cut(s) | 675 |
| BseYI | CCCAGC | 2 cut(s) | 93, 1012 |
| BshFI | GGCC | 4 cut(s) | 141, 729, 854, 975 |
| BsiHKAI | GWGCWC | 1 cut(s) | 675 |
| BsiSI | CCGG | 5 cut(s) | 138, 210, 273, 411, 818 |
| BslFI | GGGAC | 2 cut(s) | 130, 995 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 148, 317, 593, 740, 817 |
| BsmAI | GTCTC | 4 cut(s) | 416, 596, 804, 1060 |
| BsmBI | CGTCTC | 1 cut(s) | 1060 |
| BsmFI | GGGAC | 2 cut(s) | 130, 995 |
| BsnI | GGCC | 4 cut(s) | 141, 729, 854, 975 |
| Bso31I | GGTCTC | 1 cut(s) | 416 |
| Bsp119I | TTCGAA | 2 cut(s) | 71, 197 |
| Bsp1286I | GDGCHC | 1 cut(s) | 675 |
| Bsp143I | GATC | 3 cut(s) | 349, 529, 1029 |
| BspACI | CCGC | 2 cut(s) | 9, 517 |
| BspANI | GGCC | 4 cut(s) | 141, 729, 854, 975 |
| BspCNI | CTCAG | 1 cut(s) | 184 |
| BspLI | GGNNCC | 4 cut(s) | 309, 478, 855, 1031 |
| BspMI | ACCTGC | 1 cut(s) | 868 |
| BspPI | GGATC | 2 cut(s) | 1024, 1037 |
| BspT104I | TTCGAA | 2 cut(s) | 71, 197 |
| BspTI | CTTAAG | 1 cut(s) | 392 |
| BspTNI | GGTCTC | 1 cut(s) | 416 |
| BsrDI | GCAATG | 1 cut(s) | 104 |
| BsrI | ACTGG | 2 cut(s) | 738, 1180 |
| BssECI | CCNNGG | 3 cut(s) | 311, 956, 976 |
| BssMI | GATC | 3 cut(s) | 349, 529, 1029 |
| BssT1I | CCWWGG | 2 cut(s) | 956, 976 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 2 cut(s) | 584, 862 |
| Bst6I | CTCTTC | 3 cut(s) | 55, 126, 1039 |
| BstAFI | CTTAAG | 1 cut(s) | 392 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 32 |
| BstBAI | YACGTR | 1 cut(s) | 243 |
| BstBI | TTCGAA | 2 cut(s) | 71, 197 |
| BstC8I | GCNNGC | 2 cut(s) | 33, 399 |
| BstDEI | CTNAG | 2 cut(s) | 171, 835 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 591 |
| BstF5I | GGATG | 4 cut(s) | 256, 734, 1098, 1118 |
| BstKTI | GATC | 3 cut(s) | 352, 532, 1032 |
| BstMAI | GTCTC | 4 cut(s) | 416, 596, 804, 1060 |
| BstMBI | GATC | 3 cut(s) | 349, 529, 1029 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 17, 32, 305, 330, 851 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstSCI | CCNGG | 3 cut(s) | 272, 310, 817 |
| BstSLI | GKGCMC | 1 cut(s) | 675 |
| BstSNI | TACGTA | 1 cut(s) | 243 |
| BstX2I | RGATCY | 1 cut(s) | 1029 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1040 |
| BstYI | RGATCY | 1 cut(s) | 1029 |
| Bsu36I | CCTNAGG | 1 cut(s) | 835 |
| BsuRI | GGCC | 4 cut(s) | 141, 729, 854, 975 |
| BtsCI | GGATG | 4 cut(s) | 256, 734, 1098, 1118 |
| BtsIMutI | CAGTG | 3 cut(s) | 690, 745, 867 |
| BveI | ACCTGC | 1 cut(s) | 868 |
| Cac8I | GCNNGC | 2 cut(s) | 33, 399 |
| Cfr13I | GGNCC | 2 cut(s) | 808, 853 |
| Csp6I | GTAC | 4 cut(s) | 369, 510, 654, 746 |
| CviAII | CATG | 2 cut(s) | 89, 1002 |
| CviQI | GTAC | 4 cut(s) | 369, 510, 654, 746 |
| DdeI | CTNAG | 2 cut(s) | 171, 835 |
| DpnI | GATC | 3 cut(s) | 351, 531, 1031 |
| DpnII | GATC | 3 cut(s) | 349, 529, 1029 |
| Eam1104I | CTCTTC | 3 cut(s) | 55, 126, 1039 |
| EarI | CTCTTC | 3 cut(s) | 55, 126, 1039 |
| Eco105I | TACGTA | 1 cut(s) | 243 |
| Eco130I | CCWWGG | 2 cut(s) | 956, 976 |
| Eco147I | AGGCCT | 1 cut(s) | 975 |
| Eco31I | GGTCTC | 1 cut(s) | 416 |
| Eco47I | GGWCC | 1 cut(s) | 808 |
| Eco57I | CTGAAG | 1 cut(s) | 824 |
| Eco81I | CCTNAGG | 1 cut(s) | 835 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 591 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 2 cut(s) | 956, 976 |
| ErhI | CCWWGG | 2 cut(s) | 956, 976 |
| Esp3I | CGTCTC | 1 cut(s) | 1060 |
| FaeI | CATG | 2 cut(s) | 92, 1005 |
| FaqI | GGGAC | 2 cut(s) | 130, 995 |
| FatI | CATG | 2 cut(s) | 88, 1001 |
| FbaI | TGATCA | 1 cut(s) | 349 |
| Fnu4HI | GCNGC | 1 cut(s) | 517 |
| FokI | GGATG | 4 cut(s) | 263, 721, 1105, 1105 |
| Fsp4HI | GCNGC | 1 cut(s) | 517 |
| FspBI | CTAG | 4 cut(s) | 57, 782, 957, 977 |
| GluI | GCNGC | 1 cut(s) | 517 |
| GsaI | CCCAGC | 2 cut(s) | 97, 1016 |
| GsuI | CTGGAG | 3 cut(s) | 67, 495, 732 |
| HaeIII | GGCC | 4 cut(s) | 141, 729, 854, 975 |
| HapII | CCGG | 5 cut(s) | 138, 210, 273, 411, 818 |
| Hin1II | CATG | 2 cut(s) | 92, 1005 |
| HindIII | AAGCTT | 2 cut(s) | 395, 843 |
| HinfI | GANTC | 4 cut(s) | 118, 206, 680, 998 |
| HpaII | CCGG | 5 cut(s) | 138, 210, 273, 411, 818 |
| HphI | GGTGA | 7 cut(s) | 224, 359, 647, 851, 934, 1175, 1190 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 673 |
| Hpy188I | TCNGA | 5 cut(s) | 126, 174, 280, 580, 804 |
| Hpy188III | TCNNGA | 2 cut(s) | 57, 474 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 673 |
| Hpy99I | CGWCG | 1 cut(s) | 294 |
| HpyAV | CCTTC | 4 cut(s) | 768, 799, 904, 1175 |
| HpyCH4III | ACNGT | 2 cut(s) | 584, 862 |
| HpyCH4IV | ACGT | 1 cut(s) | 242 |
| HpyCH4V | TGCA | 4 cut(s) | 401, 629, 673, 1158 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 17, 32, 305, 330, 851 |
| HpyF3I | CTNAG | 2 cut(s) | 171, 835 |
| HpySE526I | ACGT | 1 cut(s) | 242 |
| Hsp92II | CATG | 2 cut(s) | 92, 1005 |
| Ksp22I | TGATCA | 1 cut(s) | 349 |
| Kzo9I | GATC | 3 cut(s) | 349, 529, 1029 |
| LmnI | GCTCC | 4 cut(s) | 313, 476, 980, 1148 |
| LweI | GCATC | 3 cut(s) | 259, 1045, 1127 |
| MaeI | CTAG | 4 cut(s) | 57, 782, 957, 977 |
| MaeII | ACGT | 1 cut(s) | 242 |
| MaeIII | GTNAC | 3 cut(s) | 466, 829, 1171 |
| MalI | GATC | 3 cut(s) | 351, 531, 1031 |
| MboI | GATC | 3 cut(s) | 349, 529, 1029 |
| MboII | GAAGA | 7 cut(s) | 42, 45, 113, 211, 1056, 1064, 1148 |
| MflI | RGATCY | 1 cut(s) | 1029 |
| MhlI | GDGCHC | 1 cut(s) | 675 |
| MluCI | AATT | 6 cut(s) | 165, 294, 414, 555, 666, 891 |
| MlyI | GAGTC | 2 cut(s) | 112, 200 |
| MmeI | TCCRAC | 1 cut(s) | 258 |
| MroXI | GAANNNNTTC | 2 cut(s) | 131, 285 |
| MseI | TTAA | 2 cut(s) | 393, 873 |
| MslI | CAYNNNNRTG | 1 cut(s) | 753 |
| MspCI | CTTAAG | 1 cut(s) | 392 |
| MspI | CCGG | 5 cut(s) | 138, 210, 273, 411, 818 |
| MspR9I | CCNGG | 3 cut(s) | 274, 312, 819 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 17, 32, 305, 330, 851 |
| NciI | CCSGG | 2 cut(s) | 274, 819 |
| NdeII | GATC | 3 cut(s) | 349, 529, 1029 |
| NlaIII | CATG | 2 cut(s) | 92, 1005 |
| NlaIV | GGNNCC | 4 cut(s) | 309, 478, 855, 1031 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| NspV | TTCGAA | 2 cut(s) | 71, 197 |
| PaqCI | CACCTGC | 1 cut(s) | 868 |
| PceI | AGGCCT | 1 cut(s) | 975 |
| PdmI | GAANNNNTTC | 2 cut(s) | 131, 285 |
| PfeI | GAWTC | 2 cut(s) | 680, 998 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 740 |
| PkrI | GCNGC | 1 cut(s) | 518 |
| PleI | GAGTC | 2 cut(s) | 112, 200 |
| PpsI | GAGTC | 2 cut(s) | 112, 200 |
| Ppu21I | YACGTR | 1 cut(s) | 243 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspFI | CCCAGC | 2 cut(s) | 93, 1012 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 4 cut(s) | 309, 478, 855, 1031 |
| PspPI | GGNCC | 2 cut(s) | 808, 853 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 762, 794 |
| PsuI | RGATCY | 1 cut(s) | 1029 |
| RsaI | GTAC | 4 cut(s) | 370, 511, 655, 747 |
| RsaNI | GTAC | 4 cut(s) | 369, 510, 654, 746 |
| RseI | CAYNNNNRTG | 1 cut(s) | 753 |
| SaqAI | TTAA | 2 cut(s) | 393, 873 |
| SatI | GCNGC | 1 cut(s) | 517 |
| Sau3AI | GATC | 3 cut(s) | 349, 529, 1029 |
| Sau96I | GGNCC | 2 cut(s) | 808, 853 |
| SchI | GAGTC | 2 cut(s) | 112, 200 |
| ScrFI | CCNGG | 3 cut(s) | 274, 312, 819 |
| SduI | GDGCHC | 1 cut(s) | 675 |
| SfaNI | GCATC | 3 cut(s) | 259, 1045, 1127 |
| SfuI | TTCGAA | 2 cut(s) | 71, 197 |
| SinI | GGWCC | 1 cut(s) | 808 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 753 |
| SmlI | CTYRAG | 1 cut(s) | 392 |
| SmoI | CTYRAG | 1 cut(s) | 392 |
| SnaBI | TACGTA | 1 cut(s) | 243 |
| Sse9I | AATT | 6 cut(s) | 165, 294, 414, 555, 666, 891 |
| SseBI | AGGCCT | 1 cut(s) | 975 |
| SsiI | CCGC | 2 cut(s) | 9, 517 |
| SspMI | CTAG | 4 cut(s) | 57, 782, 957, 977 |
| StuI | AGGCCT | 1 cut(s) | 975 |
| StyD4I | CCNGG | 3 cut(s) | 272, 310, 817 |
| StyI | CCWWGG | 2 cut(s) | 956, 976 |
| TaaI | ACNGT | 2 cut(s) | 584, 862 |
| TaiI | ACGT | 1 cut(s) | 245 |
| TaqI | TCGA | 4 cut(s) | 71, 197, 289, 561 |
| TasI | AATT | 6 cut(s) | 165, 294, 414, 555, 666, 891 |
| TauI | GCSGC | 1 cut(s) | 519 |
| TfiI | GAWTC | 2 cut(s) | 680, 998 |
| Tru1I | TTAA | 2 cut(s) | 393, 873 |
| Tru9I | TTAA | 2 cut(s) | 393, 873 |
| TscAI | CASTG | 3 cut(s) | 690, 745, 867 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspDTI | ATGAA | 3 cut(s) | 144, 484, 990 |
| TspRI | CASTG | 3 cut(s) | 690, 745, 867 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 740 |
| Vha464I | CTTAAG | 1 cut(s) | 392 |
| VneI | GTGCAC | 1 cut(s) | 671 |
| VpaK11BI | GGWCC | 1 cut(s) | 808 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 591 |
| XapI | RAATTY | 2 cut(s) | 165, 414 |
| XbaI | TCTAGA | 1 cut(s) | 56 |
| XmaJI | CCTAGG | 2 cut(s) | 956, 976 |
| XmnI | GAANNNNTTC | 2 cut(s) | 131, 285 |
| XspI | CTAG | 4 cut(s) | 57, 782, 957, 977 |