protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 446 |
| AccII | CGCG | 1 cut(s) | 469 |
| AciI | CCGC | 2 cut(s) | 462, 481 |
| AclWI | GGATC | 2 cut(s) | 127, 140 |
| AcoI | YGGCCR | 1 cut(s) | 381 |
| AcyI | GRCGYC | 1 cut(s) | 328 |
| AfaI | GTAC | 1 cut(s) | 85 |
| AgeI | ACCGGT | 1 cut(s) | 182 |
| AgsI | TTSAA | 1 cut(s) | 158 |
| AluBI | AGCT | 3 cut(s) | 89, 143, 542 |
| AluI | AGCT | 3 cut(s) | 89, 143, 542 |
| Alw26I | GTCTC | 1 cut(s) | 260 |
| AlwI | GGATC | 2 cut(s) | 127, 140 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 542 |
| Ama87I | CYCGRG | 1 cut(s) | 295 |
| AoxI | GGCC | 2 cut(s) | 79, 381 |
| ApeKI | GCWGC | 3 cut(s) | 412, 539, 583 |
| AsiGI | ACCGGT | 1 cut(s) | 182 |
| AspLEI | GCGC | 3 cut(s) | 302, 447, 469 |
| AsuC2I | CCSGG | 4 cut(s) | 167, 195, 296, 297 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 34 |
| AvaI | CYCGRG | 1 cut(s) | 295 |
| BalI | TGGCCA | 1 cut(s) | 383 |
| BamHI | GGATCC | 1 cut(s) | 132 |
| BbvI | GCAGC | 3 cut(s) | 424, 551, 570 |
| BccI | CCATC | 2 cut(s) | 89, 526 |
| BceAI | ACGGC | 2 cut(s) | 66, 88 |
| BclI | TGATCA | 1 cut(s) | 544 |
| BcnI | CCSGG | 4 cut(s) | 167, 195, 296, 297 |
| BcoDI | GTCTC | 1 cut(s) | 260 |
| BfaI | CTAG | 2 cut(s) | 144, 284 |
| BfmI | CTRYAG | 1 cut(s) | 102 |
| BfoI | RGCGCY | 1 cut(s) | 303 |
| BisI | GCNGC | 4 cut(s) | 413, 482, 540, 584 |
| BlsI | GCNGC | 4 cut(s) | 414, 483, 541, 585 |
| Bme1390I | CCNGG | 4 cut(s) | 167, 195, 296, 297 |
| BmeT110I | CYCGRG | 1 cut(s) | 295 |
| BmiI | GGNNCC | 1 cut(s) | 134 |
| BmrFI | CCNGG | 4 cut(s) | 167, 195, 296, 297 |
| BmsI | GCATC | 3 cut(s) | 119, 137, 424 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 456, 488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 574 |
| BpuMI | CCSGG | 4 cut(s) | 167, 195, 296, 297 |
| BsaHI | GRCGYC | 1 cut(s) | 328 |
| BsaJI | CCNNGG | 2 cut(s) | 295, 384 |
| BsaWI | WCCGGW | 1 cut(s) | 182 |
| Bse118I | RCCGGY | 1 cut(s) | 182 |
| Bse1I | ACTGG | 2 cut(s) | 134, 209 |
| Bse3DI | GCAATG | 1 cut(s) | 476 |
| BseDI | CCNNGG | 2 cut(s) | 295, 384 |
| BseGI | GGATG | 3 cut(s) | 110, 370, 415 |
| BseMI | GCAATG | 1 cut(s) | 476 |
| BseMII | CTCAG | 1 cut(s) | 588 |
| BseNI | ACTGG | 2 cut(s) | 134, 209 |
| BseXI | GCAGC | 3 cut(s) | 424, 551, 570 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| Bsh1236I | CGCG | 1 cut(s) | 469 |
| BshFI | GGCC | 2 cut(s) | 81, 383 |
| BshTI | ACCGGT | 1 cut(s) | 182 |
| BsiHKCI | CYCGRG | 1 cut(s) | 295 |
| BsiSI | CCGG | 4 cut(s) | 167, 183, 195, 296 |
| BslFI | GGGAC | 1 cut(s) | 315 |
| BsmAI | GTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 1 cut(s) | 315 |
| BsnI | GGCC | 2 cut(s) | 81, 383 |
| BsoBI | CYCGRG | 1 cut(s) | 295 |
| Bsp143I | GATC | 3 cut(s) | 132, 533, 544 |
| Bsp19I | CCATGG | 1 cut(s) | 384 |
| BspACI | CCGC | 2 cut(s) | 462, 481 |
| BspANI | GGCC | 2 cut(s) | 81, 383 |
| BspCNI | CTCAG | 1 cut(s) | 587 |
| BspFNI | CGCG | 1 cut(s) | 469 |
| BspLI | GGNNCC | 1 cut(s) | 134 |
| BspPI | GGATC | 2 cut(s) | 127, 140 |
| BsrDI | GCAATG | 1 cut(s) | 476 |
| BsrFI | RCCGGY | 1 cut(s) | 182 |
| BsrI | ACTGG | 2 cut(s) | 134, 209 |
| BssAI | RCCGGY | 1 cut(s) | 182 |
| BssECI | CCNNGG | 2 cut(s) | 295, 384 |
| BssMI | GATC | 3 cut(s) | 132, 533, 544 |
| BssNI | GRCGYC | 1 cut(s) | 328 |
| BssT1I | CCWWGG | 1 cut(s) | 384 |
| BstACI | GRCGYC | 1 cut(s) | 328 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 421 |
| BstDEI | CTNAG | 2 cut(s) | 458, 574 |
| BstDSI | CCRYGG | 1 cut(s) | 384 |
| BstF5I | GGATG | 3 cut(s) | 110, 370, 415 |
| BstFNI | CGCG | 1 cut(s) | 469 |
| BstH2I | RGCGCY | 1 cut(s) | 303 |
| BstHHI | GCGC | 3 cut(s) | 302, 447, 469 |
| BstKTI | GATC | 3 cut(s) | 135, 536, 547 |
| BstMAI | GTCTC | 1 cut(s) | 260 |
| BstMBI | GATC | 3 cut(s) | 132, 533, 544 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 107, 421 |
| BstSCI | CCNGG | 4 cut(s) | 165, 193, 294, 295 |
| BstSFI | CTRYAG | 1 cut(s) | 102 |
| BstUI | CGCG | 1 cut(s) | 469 |
| BstV1I | GCAGC | 3 cut(s) | 424, 551, 570 |
| BstX2I | RGATCY | 1 cut(s) | 132 |
| BstYI | RGATCY | 1 cut(s) | 132 |
| BsuRI | GGCC | 2 cut(s) | 81, 383 |
| BtgI | CCRYGG | 1 cut(s) | 384 |
| BtsCI | GGATG | 3 cut(s) | 110, 370, 415 |
| BtsI | GCAGTG | 1 cut(s) | 454 |
| BtsIMutI | CAGTG | 2 cut(s) | 127, 454 |
| CaiI | CAGNNNCTG | 1 cut(s) | 542 |
| CfoI | GCGC | 3 cut(s) | 302, 447, 469 |
| Cfr10I | RCCGGY | 1 cut(s) | 182 |
| Cfr9I | CCCGGG | 1 cut(s) | 295 |
| CseI | GACGC | 1 cut(s) | 317 |
| Csp6I | GTAC | 1 cut(s) | 84 |
| CspAI | ACCGGT | 1 cut(s) | 182 |
| CviAII | CATG | 4 cut(s) | 151, 316, 351, 385 |
| CviQI | GTAC | 1 cut(s) | 84 |
| DdeI | CTNAG | 2 cut(s) | 458, 574 |
| DpnI | GATC | 3 cut(s) | 134, 535, 546 |
| DpnII | GATC | 3 cut(s) | 132, 533, 544 |
| EaeI | YGGCCR | 1 cut(s) | 381 |
| Eco130I | CCWWGG | 1 cut(s) | 384 |
| Eco88I | CYCGRG | 1 cut(s) | 295 |
| EcoT14I | CCWWGG | 1 cut(s) | 384 |
| EcoT22I | ATGCAT | 1 cut(s) | 152 |
| ErhI | CCWWGG | 1 cut(s) | 384 |
| FaeI | CATG | 4 cut(s) | 154, 319, 354, 388 |
| FaqI | GGGAC | 1 cut(s) | 315 |
| FatI | CATG | 4 cut(s) | 150, 315, 350, 384 |
| FbaI | TGATCA | 1 cut(s) | 544 |
| Fnu4HI | GCNGC | 4 cut(s) | 413, 482, 540, 584 |
| FokI | GGATG | 3 cut(s) | 97, 357, 402 |
| Fsp4HI | GCNGC | 4 cut(s) | 413, 482, 540, 584 |
| FspBI | CTAG | 2 cut(s) | 144, 284 |
| FspI | TGCGCA | 1 cut(s) | 446 |
| GlaI | GCGC | 3 cut(s) | 301, 446, 468 |
| GluI | GCNGC | 4 cut(s) | 413, 482, 540, 584 |
| HaeII | RGCGCY | 1 cut(s) | 303 |
| HaeIII | GGCC | 2 cut(s) | 81, 383 |
| HapII | CCGG | 4 cut(s) | 167, 183, 195, 296 |
| HgaI | GACGC | 1 cut(s) | 317 |
| HhaI | GCGC | 3 cut(s) | 302, 447, 469 |
| Hin1I | GRCGYC | 1 cut(s) | 328 |
| Hin1II | CATG | 4 cut(s) | 154, 319, 354, 388 |
| Hin6I | GCGC | 3 cut(s) | 300, 445, 467 |
| HinP1I | GCGC | 3 cut(s) | 300, 445, 467 |
| HinfI | GANTC | 3 cut(s) | 291, 471, 562 |
| HpaII | CCGG | 4 cut(s) | 167, 183, 195, 296 |
| HphI | GGTGA | 2 cut(s) | 20, 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 407 |
| Hpy188I | TCNGA | 1 cut(s) | 558 |
| Hpy188III | TCNNGA | 1 cut(s) | 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 407 |
| HpyAV | CCTTC | 2 cut(s) | 271, 281 |
| HpyCH4IV | ACGT | 1 cut(s) | 250 |
| HpyCH4V | TGCA | 5 cut(s) | 110, 117, 150, 350, 452 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 107, 421 |
| HpyF3I | CTNAG | 2 cut(s) | 458, 574 |
| HpySE526I | ACGT | 1 cut(s) | 250 |
| Hsp92I | GRCGYC | 1 cut(s) | 328 |
| Hsp92II | CATG | 4 cut(s) | 154, 319, 354, 388 |
| HspAI | GCGC | 3 cut(s) | 300, 445, 467 |
| Ksp22I | TGATCA | 1 cut(s) | 544 |
| Kzo9I | GATC | 3 cut(s) | 132, 533, 544 |
| LmnI | GCTCC | 1 cut(s) | 464 |
| LpnPI | CCDG | 9 cut(s) | 115, 127, 180, 196, 208, 222, 309, 423, 561 |
| Lsp1109I | GCAGC | 3 cut(s) | 424, 551, 570 |
| LweI | GCATC | 3 cut(s) | 119, 137, 424 |
| MaeI | CTAG | 2 cut(s) | 144, 284 |
| MaeII | ACGT | 1 cut(s) | 250 |
| MaeIII | GTNAC | 1 cut(s) | 125 |
| MalI | GATC | 3 cut(s) | 134, 535, 546 |
| MboI | GATC | 3 cut(s) | 132, 533, 544 |
| MboII | GAAGA | 2 cut(s) | 62, 65 |
| MflI | RGATCY | 1 cut(s) | 132 |
| MlsI | TGGCCA | 1 cut(s) | 383 |
| MluCI | AATT | 1 cut(s) | 199 |
| MluNI | TGGCCA | 1 cut(s) | 383 |
| MlyI | GAGTC | 1 cut(s) | 465 |
| MnlI | CCTC | 2 cut(s) | 210, 552 |
| Mox20I | TGGCCA | 1 cut(s) | 383 |
| Mph1103I | ATGCAT | 1 cut(s) | 152 |
| MscI | TGGCCA | 1 cut(s) | 383 |
| MseI | TTAA | 2 cut(s) | 177, 491 |
| Msp20I | TGGCCA | 1 cut(s) | 383 |
| MspA1I | CMGCKG | 1 cut(s) | 542 |
| MspI | CCGG | 4 cut(s) | 167, 183, 195, 296 |
| MspR9I | CCNGG | 4 cut(s) | 167, 195, 296, 297 |
| MvnI | CGCG | 1 cut(s) | 469 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 107, 421 |
| NciI | CCSGG | 4 cut(s) | 167, 195, 296, 297 |
| NcoI | CCATGG | 1 cut(s) | 384 |
| NdeII | GATC | 3 cut(s) | 132, 533, 544 |
| NlaIII | CATG | 4 cut(s) | 154, 319, 354, 388 |
| NlaIV | GGNNCC | 1 cut(s) | 134 |
| NmuCI | GTSAC | 1 cut(s) | 125 |
| NsbI | TGCGCA | 1 cut(s) | 446 |
| NsiI | ATGCAT | 1 cut(s) | 152 |
| PfeI | GAWTC | 2 cut(s) | 291, 562 |
| PinAI | ACCGGT | 1 cut(s) | 182 |
| PkrI | GCNGC | 4 cut(s) | 414, 483, 541, 585 |
| PleI | GAGTC | 1 cut(s) | 465 |
| PpsI | GAGTC | 1 cut(s) | 465 |
| PspN4I | GGNNCC | 1 cut(s) | 134 |
| PstNI | CAGNNNCTG | 1 cut(s) | 542 |
| PsuI | RGATCY | 1 cut(s) | 132 |
| PvuII | CAGCTG | 1 cut(s) | 542 |
| RsaI | GTAC | 1 cut(s) | 85 |
| RsaNI | GTAC | 1 cut(s) | 84 |
| SaqAI | TTAA | 2 cut(s) | 177, 491 |
| SatI | GCNGC | 4 cut(s) | 413, 482, 540, 584 |
| Sau3AI | GATC | 3 cut(s) | 132, 533, 544 |
| SchI | GAGTC | 1 cut(s) | 465 |
| ScrFI | CCNGG | 4 cut(s) | 167, 195, 296, 297 |
| SetI | ASST | 9 cut(s) | 10, 24, 91, 127, 145, 253, 544, 553, 580 |
| SfaNI | GCATC | 3 cut(s) | 119, 137, 424 |
| SfcI | CTRYAG | 1 cut(s) | 102 |
| SmaI | CCCGGG | 1 cut(s) | 297 |
| Sse9I | AATT | 1 cut(s) | 199 |
| SsiI | CCGC | 2 cut(s) | 462, 481 |
| SspI | AATATT | 1 cut(s) | 432 |
| SspMI | CTAG | 2 cut(s) | 144, 284 |
| StyD4I | CCNGG | 4 cut(s) | 165, 193, 294, 295 |
| StyI | CCWWGG | 1 cut(s) | 384 |
| TaiI | ACGT | 1 cut(s) | 253 |
| TaqI | TCGA | 2 cut(s) | 229, 506 |
| TasI | AATT | 1 cut(s) | 199 |
| TauI | GCSGC | 1 cut(s) | 484 |
| TfiI | GAWTC | 2 cut(s) | 291, 562 |
| Tru1I | TTAA | 2 cut(s) | 177, 491 |
| Tru9I | TTAA | 2 cut(s) | 177, 491 |
| TscAI | CASTG | 2 cut(s) | 134, 454 |
| TseFI | GTSAC | 1 cut(s) | 125 |
| TseI | GCWGC | 3 cut(s) | 412, 539, 583 |
| Tsp45I | GTSAC | 1 cut(s) | 125 |
| TspDTI | ATGAA | 2 cut(s) | 17, 528 |
| TspGWI | ACGGA | 1 cut(s) | 411 |
| TspMI | CCCGGG | 1 cut(s) | 295 |
| TspRI | CASTG | 2 cut(s) | 134, 454 |
| XbaI | TCTAGA | 1 cut(s) | 283 |
| XmaI | CCCGGG | 1 cut(s) | 295 |
| XspI | CTAG | 2 cut(s) | 144, 284 |
| Zsp2I | ATGCAT | 1 cut(s) | 152 |