protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 16 - 42 | 2e-07 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 29 - 104 | 3.5e-07 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 142 - 199 | 1.8e-11 | Ankyrin repeats (3 copies) |
| Ank_5 | PF13857 | 146 - 189 | 4.3e-07 | Ankyrin repeats (many copies) |
| Ank | PF00023 | 147 - 167 | 8.9e-06 | Ankyrin repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 554 |
| AciI | CCGC | 4 cut(s) | 219, 253, 461, 552 |
| AclWI | GGATC | 1 cut(s) | 448 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AcsI | RAATTY | 2 cut(s) | 155, 210 |
| AfaI | GTAC | 2 cut(s) | 331, 570 |
| AgsI | TTSAA | 4 cut(s) | 30, 86, 161, 295 |
| AjnI | CCWGG | 1 cut(s) | 269 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 341, 373 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 275, 307 |
| AluBI | AGCT | 3 cut(s) | 369, 434, 449 |
| AluI | AGCT | 3 cut(s) | 369, 434, 449 |
| Alw26I | GTCTC | 1 cut(s) | 143 |
| AlwI | GGATC | 1 cut(s) | 448 |
| Ama87I | CYCGRG | 1 cut(s) | 78 |
| AoxI | GGCC | 2 cut(s) | 99, 267 |
| ApeKI | GCWGC | 1 cut(s) | 431 |
| ApoI | RAATTY | 2 cut(s) | 155, 210 |
| AsuHPI | GGTGA | 1 cut(s) | 413 |
| AvaI | CYCGRG | 1 cut(s) | 78 |
| BbsI | GAAGAC | 1 cut(s) | 182 |
| BbvI | GCAGC | 1 cut(s) | 443 |
| BccI | CCATC | 1 cut(s) | 259 |
| BciT130I | CCWGG | 1 cut(s) | 271 |
| BcoDI | GTCTC | 1 cut(s) | 143 |
| BfaI | CTAG | 1 cut(s) | 435 |
| BfmI | CTRYAG | 2 cut(s) | 429, 444 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BglII | AGATCT | 2 cut(s) | 106, 520 |
| BisI | GCNGC | 2 cut(s) | 432, 462 |
| BlsI | GCNGC | 2 cut(s) | 433, 463 |
| Bme1390I | CCNGG | 1 cut(s) | 271 |
| BmeT110I | CYCGRG | 1 cut(s) | 78 |
| BmrFI | CCNGG | 1 cut(s) | 271 |
| BmrI | ACTGGG | 1 cut(s) | 415 |
| BmuI | ACTGGG | 1 cut(s) | 415 |
| BpiI | GAAGAC | 1 cut(s) | 182 |
| BpmI | CTGGAG | 1 cut(s) | 349 |
| Bpu10I | CCTNAGC | 1 cut(s) | 417 |
| BpuEI | CTTGAG | 1 cut(s) | 498 |
| BsaAI | YACGTR | 1 cut(s) | 302 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bse1I | ACTGG | 1 cut(s) | 410 |
| Bse3DI | GCAATG | 1 cut(s) | 456 |
| BseBI | CCWGG | 1 cut(s) | 271 |
| BseMI | GCAATG | 1 cut(s) | 456 |
| BseNI | ACTGG | 1 cut(s) | 410 |
| BseXI | GCAGC | 1 cut(s) | 443 |
| BshFI | GGCC | 2 cut(s) | 101, 269 |
| BsiHKCI | CYCGRG | 1 cut(s) | 78 |
| BslFI | GGGAC | 1 cut(s) | 235 |
| BsmAI | GTCTC | 1 cut(s) | 143 |
| BsmFI | GGGAC | 1 cut(s) | 235 |
| BsnI | GGCC | 2 cut(s) | 101, 269 |
| BsoBI | CYCGRG | 1 cut(s) | 78 |
| Bsp143I | GATC | 3 cut(s) | 106, 440, 520 |
| BspACI | CCGC | 4 cut(s) | 219, 253, 461, 552 |
| BspANI | GGCC | 2 cut(s) | 101, 269 |
| BspMAI | CTGCAG | 1 cut(s) | 433 |
| BspPI | GGATC | 1 cut(s) | 448 |
| BspQI | GCTCTTC | 2 cut(s) | 456, 561 |
| BsrBI | CCGCTC | 1 cut(s) | 554 |
| BsrDI | GCAATG | 1 cut(s) | 456 |
| BsrI | ACTGG | 1 cut(s) | 410 |
| BssMI | GATC | 3 cut(s) | 106, 440, 520 |
| Bst2UI | CCWGG | 1 cut(s) | 271 |
| Bst4CI | ACNGT | 3 cut(s) | 16, 291, 344 |
| Bst6I | CTCTTC | 3 cut(s) | 141, 456, 561 |
| BstBAI | YACGTR | 1 cut(s) | 302 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 253 |
| BstDEI | CTNAG | 1 cut(s) | 417 |
| BstKTI | GATC | 3 cut(s) | 109, 443, 523 |
| BstMAI | GTCTC | 1 cut(s) | 143 |
| BstMBI | GATC | 3 cut(s) | 106, 440, 520 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 257, 266 |
| BstNI | CCWGG | 1 cut(s) | 271 |
| BstNSI | RCATGY | 2 cut(s) | 203, 479 |
| BstSCI | CCNGG | 1 cut(s) | 269 |
| BstSFI | CTRYAG | 2 cut(s) | 429, 444 |
| BstV1I | GCAGC | 1 cut(s) | 443 |
| BstV2I | GAAGAC | 1 cut(s) | 182 |
| BstX2I | RGATCY | 3 cut(s) | 106, 440, 520 |
| BstYI | RGATCY | 3 cut(s) | 106, 440, 520 |
| BsuRI | GGCC | 2 cut(s) | 101, 269 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 253 |
| CseI | GACGC | 1 cut(s) | 596 |
| Csp6I | GTAC | 2 cut(s) | 330, 569 |
| CviAII | CATG | 3 cut(s) | 127, 200, 476 |
| CviJI | RGCY | 9 cut(s) | 101, 116, 170, 251, 260, 269, 369, 434, 449 |
| CviKI_1 | RGCY | 9 cut(s) | 101, 116, 170, 251, 260, 269, 369, 434, 449 |
| CviQI | GTAC | 2 cut(s) | 330, 569 |
| DdeI | CTNAG | 1 cut(s) | 417 |
| DpnI | GATC | 3 cut(s) | 108, 442, 522 |
| DpnII | GATC | 3 cut(s) | 106, 440, 520 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| Eam1104I | CTCTTC | 3 cut(s) | 141, 456, 561 |
| EarI | CTCTTC | 3 cut(s) | 141, 456, 561 |
| Eco88I | CYCGRG | 1 cut(s) | 78 |
| EcoRII | CCWGG | 1 cut(s) | 269 |
| FaeI | CATG | 3 cut(s) | 130, 203, 479 |
| FaiI | YATR | 7 cut(s) | 57, 63, 128, 201, 339, 477, 563 |
| FaqI | GGGAC | 1 cut(s) | 235 |
| FatI | CATG | 3 cut(s) | 126, 199, 475 |
| FauI | CCCGC | 2 cut(s) | 212, 260 |
| Fnu4HI | GCNGC | 2 cut(s) | 432, 462 |
| Fsp4HI | GCNGC | 2 cut(s) | 432, 462 |
| FspBI | CTAG | 1 cut(s) | 435 |
| GluI | GCNGC | 2 cut(s) | 432, 462 |
| GsuI | CTGGAG | 1 cut(s) | 349 |
| HaeIII | GGCC | 2 cut(s) | 101, 269 |
| HgaI | GACGC | 1 cut(s) | 596 |
| Hin1II | CATG | 3 cut(s) | 130, 203, 479 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 4 cut(s) | 223, 362, 386, 511 |
| HphI | GGTGA | 1 cut(s) | 413 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 586 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 515, 524 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 586 |
| HpyAV | CCTTC | 3 cut(s) | 268, 464, 568 |
| HpyCH4III | ACNGT | 3 cut(s) | 16, 291, 344 |
| HpyCH4IV | ACGT | 2 cut(s) | 301, 313 |
| HpyCH4V | TGCA | 2 cut(s) | 203, 431 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 257, 266 |
| HpyF3I | CTNAG | 1 cut(s) | 417 |
| HpySE526I | ACGT | 2 cut(s) | 301, 313 |
| Hsp92II | CATG | 3 cut(s) | 130, 203, 479 |
| Kzo9I | GATC | 3 cut(s) | 106, 440, 520 |
| LguI | GCTCTTC | 2 cut(s) | 456, 561 |
| LmnI | GCTCC | 1 cut(s) | 339 |
| LpnPI | CCDG | 7 cut(s) | 150, 256, 283, 379, 391, 441, 509 |
| Lsp1109I | GCAGC | 1 cut(s) | 443 |
| MaeI | CTAG | 1 cut(s) | 435 |
| MaeII | ACGT | 2 cut(s) | 301, 313 |
| MaeIII | GTNAC | 1 cut(s) | 401 |
| MalI | GATC | 3 cut(s) | 108, 442, 522 |
| MbiI | CCGCTC | 1 cut(s) | 554 |
| MboI | GATC | 3 cut(s) | 106, 440, 520 |
| MboII | GAAGA | 6 cut(s) | 116, 158, 187, 443, 530, 548 |
| MfeI | CAATTG | 1 cut(s) | 30 |
| MflI | RGATCY | 3 cut(s) | 106, 440, 520 |
| MluCI | AATT | 5 cut(s) | 25, 30, 155, 204, 210 |
| MlyI | GAGTC | 3 cut(s) | 217, 356, 505 |
| MmeI | TCCRAC | 1 cut(s) | 372 |
| MnlI | CCTC | 3 cut(s) | 31, 431, 459 |
| MseI | TTAA | 3 cut(s) | 48, 207, 601 |
| MspR9I | CCNGG | 1 cut(s) | 271 |
| MunI | CAATTG | 1 cut(s) | 30 |
| MvaI | CCWGG | 1 cut(s) | 271 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 257, 266 |
| NdeII | GATC | 3 cut(s) | 106, 440, 520 |
| NlaIII | CATG | 3 cut(s) | 130, 203, 479 |
| NmuCI | GTSAC | 1 cut(s) | 401 |
| NspI | RCATGY | 2 cut(s) | 203, 479 |
| PciSI | GCTCTTC | 2 cut(s) | 456, 561 |
| PfeI | GAWTC | 1 cut(s) | 386 |
| PflFI | GACNNNGTC | 1 cut(s) | 590 |
| PkrI | GCNGC | 2 cut(s) | 433, 463 |
| PleI | GAGTC | 3 cut(s) | 217, 356, 505 |
| PpsI | GAGTC | 3 cut(s) | 217, 356, 505 |
| Ppu21I | YACGTR | 1 cut(s) | 302 |
| Psp6I | CCWGG | 1 cut(s) | 269 |
| PspGI | CCWGG | 1 cut(s) | 269 |
| PstI | CTGCAG | 1 cut(s) | 433 |
| PsuI | RGATCY | 3 cut(s) | 106, 440, 520 |
| PsyI | GACNNNGTC | 1 cut(s) | 590 |
| RsaI | GTAC | 2 cut(s) | 331, 570 |
| RsaNI | GTAC | 2 cut(s) | 330, 569 |
| SapI | GCTCTTC | 2 cut(s) | 456, 561 |
| SaqAI | TTAA | 3 cut(s) | 48, 207, 601 |
| SatI | GCNGC | 2 cut(s) | 432, 462 |
| Sau3AI | GATC | 3 cut(s) | 106, 440, 520 |
| SchI | GAGTC | 3 cut(s) | 217, 356, 505 |
| ScrFI | CCNGG | 1 cut(s) | 271 |
| SetI | ASST | 8 cut(s) | 279, 304, 316, 331, 371, 379, 436, 451 |
| SfcI | CTRYAG | 2 cut(s) | 429, 444 |
| SmlI | CTYRAG | 1 cut(s) | 513 |
| SmoI | CTYRAG | 1 cut(s) | 513 |
| Sse9I | AATT | 5 cut(s) | 25, 30, 155, 204, 210 |
| SsiI | CCGC | 4 cut(s) | 219, 253, 461, 552 |
| SspMI | CTAG | 1 cut(s) | 435 |
| StyD4I | CCNGG | 1 cut(s) | 269 |
| TaaI | ACNGT | 3 cut(s) | 16, 291, 344 |
| TaiI | ACGT | 2 cut(s) | 304, 316 |
| TaqI | TCGA | 1 cut(s) | 360 |
| TasI | AATT | 5 cut(s) | 25, 30, 155, 204, 210 |
| TatI | WGTACW | 1 cut(s) | 568 |
| TauI | GCSGC | 1 cut(s) | 464 |
| TfiI | GAWTC | 1 cut(s) | 386 |
| Tru1I | TTAA | 3 cut(s) | 48, 207, 601 |
| Tru9I | TTAA | 3 cut(s) | 48, 207, 601 |
| TseFI | GTSAC | 1 cut(s) | 401 |
| TseI | GCWGC | 1 cut(s) | 431 |
| Tsp45I | GTSAC | 1 cut(s) | 401 |
| TspDTI | ATGAA | 2 cut(s) | 143, 261 |
| Tth111I | GACNNNGTC | 1 cut(s) | 590 |
| XapI | RAATTY | 2 cut(s) | 155, 210 |
| XceI | RCATGY | 2 cut(s) | 203, 479 |
| XspI | CTAG | 1 cut(s) | 435 |