protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 164 |
| AclWI | GGATC | 1 cut(s) | 174 |
| AcsI | RAATTY | 1 cut(s) | 82 |
| AfaI | GTAC | 1 cut(s) | 219 |
| AgsI | TTSAA | 3 cut(s) | 87, 119, 341 |
| AjnI | CCWGG | 2 cut(s) | 105, 367 |
| AluBI | AGCT | 4 cut(s) | 34, 67, 253, 313 |
| AluI | AGCT | 4 cut(s) | 34, 67, 253, 313 |
| Alw21I | GWGCWC | 1 cut(s) | 36 |
| AlwI | GGATC | 1 cut(s) | 174 |
| ApeKI | GCWGC | 3 cut(s) | 11, 191, 227 |
| ApoI | RAATTY | 1 cut(s) | 82 |
| AsuHPI | GGTGA | 1 cut(s) | 373 |
| AsuII | TTCGAA | 1 cut(s) | 347 |
| BanII | GRGCYC | 1 cut(s) | 36 |
| Bbv12I | GWGCWC | 1 cut(s) | 36 |
| BbvI | GCAGC | 2 cut(s) | 178, 239 |
| BccI | CCATC | 1 cut(s) | 250 |
| BciT130I | CCWGG | 2 cut(s) | 107, 369 |
| BfmI | CTRYAG | 1 cut(s) | 192 |
| BisI | GCNGC | 3 cut(s) | 12, 192, 228 |
| BlsI | GCNGC | 3 cut(s) | 13, 193, 229 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 369 |
| BmrFI | CCNGG | 2 cut(s) | 107, 369 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| Bpu14I | TTCGAA | 1 cut(s) | 347 |
| BsaJI | CCNNGG | 1 cut(s) | 41 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 302, 332 |
| Bse3DI | GCAATG | 1 cut(s) | 305 |
| BseBI | CCWGG | 2 cut(s) | 107, 369 |
| BseDI | CCNNGG | 1 cut(s) | 41 |
| BseMI | GCAATG | 1 cut(s) | 305 |
| BseMII | CTCAG | 1 cut(s) | 279 |
| BseXI | GCAGC | 2 cut(s) | 178, 239 |
| BsiHKAI | GWGCWC | 1 cut(s) | 36 |
| BslFI | GGGAC | 2 cut(s) | 223, 312 |
| BsmFI | GGGAC | 2 cut(s) | 223, 312 |
| Bsp119I | TTCGAA | 1 cut(s) | 347 |
| Bsp1286I | GDGCHC | 1 cut(s) | 36 |
| Bsp143I | GATC | 2 cut(s) | 166, 256 |
| BspACI | CCGC | 1 cut(s) | 164 |
| BspCNI | CTCAG | 1 cut(s) | 278 |
| BspMAI | CTGCAG | 1 cut(s) | 196 |
| BspPI | GGATC | 1 cut(s) | 174 |
| BspT104I | TTCGAA | 1 cut(s) | 347 |
| BsrDI | GCAATG | 1 cut(s) | 305 |
| BssECI | CCNNGG | 1 cut(s) | 41 |
| BssMI | GATC | 2 cut(s) | 166, 256 |
| BssT1I | CCWWGG | 1 cut(s) | 41 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 369 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 191 |
| BstBI | TTCGAA | 1 cut(s) | 347 |
| BstDEI | CTNAG | 1 cut(s) | 265 |
| BstKTI | GATC | 2 cut(s) | 169, 259 |
| BstMBI | GATC | 2 cut(s) | 166, 256 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 191 |
| BstNI | CCWGG | 2 cut(s) | 107, 369 |
| BstSCI | CCNGG | 2 cut(s) | 105, 367 |
| BstSFI | CTRYAG | 1 cut(s) | 192 |
| BstV1I | GCAGC | 2 cut(s) | 178, 239 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 48 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| Csp6I | GTAC | 1 cut(s) | 218 |
| CviJI | RGCY | 6 cut(s) | 34, 46, 67, 144, 253, 313 |
| CviKI_1 | RGCY | 6 cut(s) | 34, 46, 67, 144, 253, 313 |
| CviQI | GTAC | 1 cut(s) | 218 |
| DdeI | CTNAG | 1 cut(s) | 265 |
| DpnI | GATC | 2 cut(s) | 168, 258 |
| DpnII | GATC | 2 cut(s) | 166, 256 |
| Ecl136II | GAGCTC | 1 cut(s) | 34 |
| Eco130I | CCWWGG | 1 cut(s) | 41 |
| Eco24I | GRGCYC | 1 cut(s) | 36 |
| Eco53kI | GAGCTC | 1 cut(s) | 34 |
| EcoICRI | GAGCTC | 1 cut(s) | 34 |
| EcoRI | GAATTC | 1 cut(s) | 82 |
| EcoRII | CCWGG | 2 cut(s) | 105, 367 |
| EcoT14I | CCWWGG | 1 cut(s) | 41 |
| EcoT38I | GRGCYC | 1 cut(s) | 36 |
| ErhI | CCWWGG | 1 cut(s) | 41 |
| FaiI | YATR | 5 cut(s) | 101, 149, 151, 153, 261 |
| FaqI | GGGAC | 2 cut(s) | 223, 312 |
| Fnu4HI | GCNGC | 3 cut(s) | 12, 192, 228 |
| FriOI | GRGCYC | 1 cut(s) | 36 |
| Fsp4HI | GCNGC | 3 cut(s) | 12, 192, 228 |
| GluI | GCNGC | 3 cut(s) | 12, 192, 228 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HincII | GTYRAC | 1 cut(s) | 159 |
| HindII | GTYRAC | 1 cut(s) | 159 |
| HinfI | GANTC | 1 cut(s) | 317 |
| HpaI | GTTAAC | 1 cut(s) | 159 |
| HphI | GGTGA | 1 cut(s) | 373 |
| Hpy166II | GTNNAC | 2 cut(s) | 139, 159 |
| Hpy188I | TCNGA | 1 cut(s) | 31 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 128, 338 |
| Hpy8I | GTNNAC | 2 cut(s) | 139, 159 |
| HpyAV | CCTTC | 1 cut(s) | 400 |
| HpyCH4V | TGCA | 5 cut(s) | 185, 194, 227, 286, 298 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 1 cut(s) | 265 |
| KspAI | GTTAAC | 1 cut(s) | 159 |
| Kzo9I | GATC | 2 cut(s) | 166, 256 |
| LmnI | GCTCC | 2 cut(s) | 272, 310 |
| LpnPI | CCDG | 8 cut(s) | 75, 92, 113, 119, 252, 299, 354, 381 |
| Lsp1109I | GCAGC | 2 cut(s) | 178, 239 |
| MaeIII | GTNAC | 1 cut(s) | 389 |
| MalI | GATC | 2 cut(s) | 168, 258 |
| MboI | GATC | 2 cut(s) | 166, 256 |
| MboII | GAAGA | 1 cut(s) | 373 |
| MhlI | GDGCHC | 1 cut(s) | 36 |
| MluCI | AATT | 3 cut(s) | 82, 293, 398 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MnlI | CCTC | 1 cut(s) | 14 |
| MseI | TTAA | 3 cut(s) | 158, 306, 323 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspR9I | CCNGG | 2 cut(s) | 107, 369 |
| MvaI | CCWGG | 2 cut(s) | 107, 369 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 191 |
| NdeII | GATC | 2 cut(s) | 166, 256 |
| NmuCI | GTSAC | 1 cut(s) | 389 |
| NspV | TTCGAA | 1 cut(s) | 347 |
| PkrI | GCNGC | 3 cut(s) | 13, 193, 229 |
| PleI | GAGTC | 1 cut(s) | 325 |
| PpsI | GAGTC | 1 cut(s) | 325 |
| Psp124BI | GAGCTC | 1 cut(s) | 36 |
| Psp6I | CCWGG | 2 cut(s) | 105, 367 |
| PspGI | CCWGG | 2 cut(s) | 105, 367 |
| PstI | CTGCAG | 1 cut(s) | 196 |
| RsaI | GTAC | 1 cut(s) | 219 |
| RsaNI | GTAC | 1 cut(s) | 218 |
| SacI | GAGCTC | 1 cut(s) | 36 |
| SaqAI | TTAA | 3 cut(s) | 158, 306, 323 |
| SatI | GCNGC | 3 cut(s) | 12, 192, 228 |
| Sau3AI | GATC | 2 cut(s) | 166, 256 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 2 cut(s) | 107, 369 |
| SduI | GDGCHC | 1 cut(s) | 36 |
| SetI | ASST | 7 cut(s) | 36, 69, 111, 255, 271, 315, 370 |
| SfcI | CTRYAG | 1 cut(s) | 192 |
| SfuI | TTCGAA | 1 cut(s) | 347 |
| Sse9I | AATT | 3 cut(s) | 82, 293, 398 |
| SsiI | CCGC | 1 cut(s) | 164 |
| SspI | AATATT | 1 cut(s) | 344 |
| SstI | GAGCTC | 1 cut(s) | 36 |
| StyD4I | CCNGG | 2 cut(s) | 105, 367 |
| StyI | CCWWGG | 1 cut(s) | 41 |
| TaqI | TCGA | 2 cut(s) | 255, 347 |
| TasI | AATT | 3 cut(s) | 82, 293, 398 |
| TatI | WGTACW | 1 cut(s) | 217 |
| Tru1I | TTAA | 3 cut(s) | 158, 306, 323 |
| Tru9I | TTAA | 3 cut(s) | 158, 306, 323 |
| TscAI | CASTG | 1 cut(s) | 237 |
| TseFI | GTSAC | 1 cut(s) | 389 |
| TseI | GCWGC | 3 cut(s) | 11, 191, 227 |
| Tsp45I | GTSAC | 1 cut(s) | 389 |
| TspRI | CASTG | 1 cut(s) | 237 |
| XapI | RAATTY | 1 cut(s) | 82 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 69 |