protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 42 - 151 | 2.3e-21 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 272, 337, 431 |
| AciI | CCGC | 3 cut(s) | 69, 270, 272 |
| AcuI | CTGAAG | 2 cut(s) | 288, 366 |
| AfaI | GTAC | 2 cut(s) | 24, 151 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 525 |
| AgsI | TTSAA | 3 cut(s) | 41, 441, 619 |
| AjnI | CCWGG | 1 cut(s) | 205 |
| AluBI | AGCT | 2 cut(s) | 161, 575 |
| AluI | AGCT | 2 cut(s) | 161, 575 |
| Alw26I | GTCTC | 1 cut(s) | 520 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 206 |
| AoxI | GGCC | 1 cut(s) | 388 |
| ApeKI | GCWGC | 1 cut(s) | 161 |
| AspS9I | GGNCC | 1 cut(s) | 612 |
| AsuHPI | GGTGA | 1 cut(s) | 388 |
| AvaII | GGWCC | 1 cut(s) | 612 |
| BbvI | GCAGC | 1 cut(s) | 148 |
| BccI | CCATC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 1 cut(s) | 207 |
| BclI | TGATCA | 1 cut(s) | 588 |
| BcoDI | GTCTC | 1 cut(s) | 520 |
| BfaI | CTAG | 1 cut(s) | 501 |
| BglII | AGATCT | 1 cut(s) | 552 |
| BisI | GCNGC | 2 cut(s) | 162, 270 |
| BlsI | GCNGC | 2 cut(s) | 163, 271 |
| Bme1390I | CCNGG | 1 cut(s) | 207 |
| Bme18I | GGWCC | 1 cut(s) | 612 |
| BmgT120I | GGNCC | 1 cut(s) | 612 |
| BmiI | GGNNCC | 1 cut(s) | 483 |
| BmrFI | CCNGG | 1 cut(s) | 207 |
| BmsI | GCATC | 1 cut(s) | 519 |
| BsaJI | CCNNGG | 2 cut(s) | 270, 608 |
| BsaWI | WCCGGW | 1 cut(s) | 508 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 525 |
| BseBI | CCWGG | 1 cut(s) | 207 |
| BseDI | CCNNGG | 2 cut(s) | 270, 608 |
| BseGI | GGATG | 2 cut(s) | 280, 534 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 525 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseRI | GAGGAG | 1 cut(s) | 397 |
| BseXI | GCAGC | 1 cut(s) | 148 |
| Bsh1236I | CGCG | 3 cut(s) | 272, 337, 431 |
| BshFI | GGCC | 1 cut(s) | 390 |
| BsiSI | CCGG | 1 cut(s) | 509 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 525 |
| BsmAI | GTCTC | 1 cut(s) | 520 |
| BsnI | GGCC | 1 cut(s) | 390 |
| Bsp143I | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| BspACI | CCGC | 3 cut(s) | 69, 270, 272 |
| BspANI | GGCC | 1 cut(s) | 390 |
| BspCNI | CTCAG | 1 cut(s) | 212 |
| BspFNI | CGCG | 3 cut(s) | 272, 337, 431 |
| BspLI | GGNNCC | 1 cut(s) | 483 |
| BssECI | CCNNGG | 2 cut(s) | 270, 608 |
| BssMI | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| BssT1I | CCWWGG | 1 cut(s) | 608 |
| Bst2UI | CCWGG | 1 cut(s) | 207 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| BstC8I | GCNNGC | 1 cut(s) | 223 |
| BstDEI | CTNAG | 2 cut(s) | 199, 319 |
| BstDSI | CCRYGG | 1 cut(s) | 270 |
| BstF5I | GGATG | 2 cut(s) | 280, 534 |
| BstFNI | CGCG | 3 cut(s) | 272, 337, 431 |
| BstKTI | GATC | 5 cut(s) | 125, 429, 489, 555, 591 |
| BstMAI | GTCTC | 1 cut(s) | 520 |
| BstMBI | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| BstNI | CCWGG | 1 cut(s) | 207 |
| BstSCI | CCNGG | 1 cut(s) | 205 |
| BstUI | CGCG | 3 cut(s) | 272, 337, 431 |
| BstV1I | GCAGC | 1 cut(s) | 148 |
| BstX2I | RGATCY | 1 cut(s) | 552 |
| BstYI | RGATCY | 1 cut(s) | 552 |
| BsuRI | GGCC | 1 cut(s) | 390 |
| BtgI | CCRYGG | 1 cut(s) | 270 |
| BtsCI | GGATG | 2 cut(s) | 280, 534 |
| BtsI | GCAGTG | 2 cut(s) | 198, 365 |
| BtsIMutI | CAGTG | 2 cut(s) | 198, 365 |
| Cac8I | GCNNGC | 1 cut(s) | 223 |
| CaiI | CAGNNNCTG | 1 cut(s) | 206 |
| Cfr13I | GGNCC | 1 cut(s) | 612 |
| Cfr42I | CCGCGG | 1 cut(s) | 273 |
| Csp6I | GTAC | 2 cut(s) | 23, 150 |
| CviAII | CATG | 2 cut(s) | 64, 421 |
| CviJI | RGCY | 6 cut(s) | 161, 225, 269, 390, 482, 575 |
| CviKI_1 | RGCY | 6 cut(s) | 161, 225, 269, 390, 482, 575 |
| CviQI | GTAC | 2 cut(s) | 23, 150 |
| DdeI | CTNAG | 2 cut(s) | 199, 319 |
| DpnI | GATC | 5 cut(s) | 124, 428, 488, 554, 590 |
| DpnII | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| DraI | TTTAAA | 1 cut(s) | 240 |
| Eco130I | CCWWGG | 1 cut(s) | 608 |
| Eco147I | AGGCCT | 1 cut(s) | 390 |
| Eco47I | GGWCC | 1 cut(s) | 612 |
| Eco57I | CTGAAG | 2 cut(s) | 288, 366 |
| EcoRII | CCWGG | 1 cut(s) | 205 |
| EcoT14I | CCWWGG | 1 cut(s) | 608 |
| ErhI | CCWWGG | 1 cut(s) | 608 |
| FaeI | CATG | 2 cut(s) | 67, 424 |
| FaiI | YATR | 9 cut(s) | 54, 65, 182, 257, 266, 342, 422, 455, 526 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 209, 241 |
| FatI | CATG | 2 cut(s) | 63, 420 |
| FbaI | TGATCA | 1 cut(s) | 588 |
| Fnu4HI | GCNGC | 2 cut(s) | 162, 270 |
| FokI | GGATG | 2 cut(s) | 287, 541 |
| Fsp4HI | GCNGC | 2 cut(s) | 162, 270 |
| FspBI | CTAG | 1 cut(s) | 501 |
| GluI | GCNGC | 2 cut(s) | 162, 270 |
| HaeIII | GGCC | 1 cut(s) | 390 |
| HapII | CCGG | 1 cut(s) | 509 |
| Hin1II | CATG | 2 cut(s) | 67, 424 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HinfI | GANTC | 2 cut(s) | 213, 324 |
| HpaI | GTTAAC | 1 cut(s) | 49 |
| HpaII | CCGG | 1 cut(s) | 509 |
| HphI | GGTGA | 1 cut(s) | 388 |
| Hpy166II | GTNNAC | 1 cut(s) | 49 |
| Hpy188I | TCNGA | 1 cut(s) | 486 |
| Hpy188III | TCNNGA | 2 cut(s) | 38, 358 |
| Hpy8I | GTNNAC | 1 cut(s) | 49 |
| HpyAV | CCTTC | 4 cut(s) | 36, 529, 551, 625 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 140, 191, 532 |
| HpyF3I | CTNAG | 2 cut(s) | 199, 319 |
| Hsp92II | CATG | 2 cut(s) | 67, 424 |
| Ksp22I | TGATCA | 1 cut(s) | 588 |
| KspAI | GTTAAC | 1 cut(s) | 49 |
| KspI | CCGCGG | 1 cut(s) | 273 |
| Kzo9I | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| LmnI | GCTCC | 2 cut(s) | 487, 572 |
| LpnPI | CCDG | 7 cut(s) | 192, 207, 219, 371, 443, 522, 561 |
| Lsp1109I | GCAGC | 1 cut(s) | 148 |
| LweI | GCATC | 1 cut(s) | 519 |
| MaeI | CTAG | 1 cut(s) | 501 |
| MaeIII | GTNAC | 4 cut(s) | 74, 172, 310, 415 |
| MalI | GATC | 5 cut(s) | 124, 428, 488, 554, 590 |
| MboI | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| MboII | GAAGA | 4 cut(s) | 285, 359, 429, 547 |
| MflI | RGATCY | 1 cut(s) | 552 |
| MluCI | AATT | 5 cut(s) | 18, 101, 177, 533, 619 |
| MnlI | CCTC | 2 cut(s) | 338, 418 |
| MseI | TTAA | 3 cut(s) | 48, 239, 628 |
| MspA1I | CMGCKG | 1 cut(s) | 272 |
| MspI | CCGG | 1 cut(s) | 509 |
| MspR9I | CCNGG | 1 cut(s) | 207 |
| MvaI | CCWGG | 1 cut(s) | 207 |
| MvnI | CGCG | 3 cut(s) | 272, 337, 431 |
| NdeII | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| NlaIII | CATG | 2 cut(s) | 67, 424 |
| NlaIV | GGNNCC | 1 cut(s) | 483 |
| NmuCI | GTSAC | 2 cut(s) | 74, 310 |
| PceI | AGGCCT | 1 cut(s) | 390 |
| PfeI | GAWTC | 2 cut(s) | 213, 324 |
| PkrI | GCNGC | 2 cut(s) | 163, 271 |
| Psp6I | CCWGG | 1 cut(s) | 205 |
| PspGI | CCWGG | 1 cut(s) | 205 |
| PspN4I | GGNNCC | 1 cut(s) | 483 |
| PspPI | GGNCC | 1 cut(s) | 612 |
| PstNI | CAGNNNCTG | 1 cut(s) | 206 |
| PsuI | RGATCY | 1 cut(s) | 552 |
| RsaI | GTAC | 2 cut(s) | 24, 151 |
| RsaNI | GTAC | 2 cut(s) | 23, 150 |
| SacII | CCGCGG | 1 cut(s) | 273 |
| SaqAI | TTAA | 3 cut(s) | 48, 239, 628 |
| SatI | GCNGC | 2 cut(s) | 162, 270 |
| Sau3AI | GATC | 5 cut(s) | 122, 426, 486, 552, 588 |
| Sau96I | GGNCC | 1 cut(s) | 612 |
| ScrFI | CCNGG | 1 cut(s) | 207 |
| SetI | ASST | 6 cut(s) | 12, 28, 81, 163, 577, 610 |
| SfaNI | GCATC | 1 cut(s) | 519 |
| Sfr303I | CCGCGG | 1 cut(s) | 273 |
| SgrBI | CCGCGG | 1 cut(s) | 273 |
| SinI | GGWCC | 1 cut(s) | 612 |
| Sse9I | AATT | 5 cut(s) | 18, 101, 177, 533, 619 |
| SseBI | AGGCCT | 1 cut(s) | 390 |
| SsiI | CCGC | 3 cut(s) | 69, 270, 272 |
| SspI | AATATT | 1 cut(s) | 582 |
| SspMI | CTAG | 1 cut(s) | 501 |
| StuI | AGGCCT | 1 cut(s) | 390 |
| StyD4I | CCNGG | 1 cut(s) | 205 |
| StyI | CCWWGG | 1 cut(s) | 608 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TasI | AATT | 5 cut(s) | 18, 101, 177, 533, 619 |
| TauI | GCSGC | 1 cut(s) | 272 |
| TfiI | GAWTC | 2 cut(s) | 213, 324 |
| Tru1I | TTAA | 3 cut(s) | 48, 239, 628 |
| Tru9I | TTAA | 3 cut(s) | 48, 239, 628 |
| TscAI | CASTG | 2 cut(s) | 198, 372 |
| TseFI | GTSAC | 2 cut(s) | 74, 310 |
| TseI | GCWGC | 1 cut(s) | 161 |
| Tsp45I | GTSAC | 2 cut(s) | 74, 310 |
| TspDTI | ATGAA | 4 cut(s) | 143, 253, 547, 612 |
| TspGWI | ACGGA | 1 cut(s) | 585 |
| TspRI | CASTG | 2 cut(s) | 198, 372 |
| VpaK11BI | GGWCC | 1 cut(s) | 612 |
| XspI | CTAG | 1 cut(s) | 501 |