protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 428 - 539 | 1.2e-27 | Domain of unknown function |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 699 |
| AarI | CACCTGC | 1 cut(s) | 254 |
| AatII | GACGTC | 1 cut(s) | 666 |
| Acc36I | ACCTGC | 1 cut(s) | 254 |
| AccBSI | CCGCTC | 1 cut(s) | 352 |
| AccII | CGCG | 1 cut(s) | 1234 |
| AciI | CCGC | 7 cut(s) | 174, 350, 375, 763, 1130, 1232, 1581 |
| AclWI | GGATC | 2 cut(s) | 734, 1385 |
| AcoI | YGGCCR | 1 cut(s) | 1578 |
| AcsI | RAATTY | 3 cut(s) | 539, 842, 1488 |
| AcuI | CTGAAG | 2 cut(s) | 483, 1452 |
| AcyI | GRCGYC | 1 cut(s) | 663 |
| AfaI | GTAC | 3 cut(s) | 505, 1312, 1398 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 451, 677, 1129 |
| AgsI | TTSAA | 8 cut(s) | 86, 242, 490, 773, 965, 1202, 1405, 1461 |
| AjiI | CACGTC | 1 cut(s) | 1497 |
| AjnI | CCWGG | 2 cut(s) | 1738, 1770 |
| AluBI | AGCT | 8 cut(s) | 44, 89, 227, 299, 450, 535, 1301, 1604 |
| AluI | AGCT | 8 cut(s) | 44, 89, 227, 299, 450, 535, 1301, 1604 |
| Alw21I | GWGCWC | 1 cut(s) | 1327 |
| Alw26I | GTCTC | 4 cut(s) | 596, 716, 827, 1503 |
| AlwI | GGATC | 2 cut(s) | 734, 1385 |
| AoxI | GGCC | 2 cut(s) | 1578, 1791 |
| ApeKI | GCWGC | 7 cut(s) | 377, 765, 869, 1349, 1352, 1601, 1604 |
| ApoI | RAATTY | 3 cut(s) | 539, 842, 1488 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1518 |
| AsuC2I | CCSGG | 1 cut(s) | 1368 |
| AsuHPI | GGTGA | 3 cut(s) | 1089, 1279, 1400 |
| AxyI | CCTNAGG | 1 cut(s) | 24 |
| BbsI | GAAGAC | 2 cut(s) | 471, 1547 |
| Bbv12I | GWGCWC | 1 cut(s) | 1327 |
| BbvI | GCAGC | 7 cut(s) | 364, 777, 881, 1336, 1364, 1591, 1613 |
| BccI | CCATC | 4 cut(s) | 599, 677, 1078, 1379 |
| BceAI | ACGGC | 3 cut(s) | 73, 106, 325 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 353, 387 |
| BciT130I | CCWGG | 2 cut(s) | 1740, 1772 |
| BciVI | GTATCC | 2 cut(s) | 1130, 1679 |
| BcnI | CCSGG | 1 cut(s) | 1368 |
| BcoDI | GTCTC | 4 cut(s) | 596, 716, 827, 1503 |
| BfaI | CTAG | 2 cut(s) | 582, 1185 |
| BfmI | CTRYAG | 1 cut(s) | 1350 |
| BfuAI | ACCTGC | 1 cut(s) | 254 |
| BfuI | GTATCC | 2 cut(s) | 1130, 1679 |
| BglII | AGATCT | 2 cut(s) | 1195, 1716 |
| Bme1390I | CCNGG | 3 cut(s) | 1368, 1740, 1772 |
| BmgBI | CACGTC | 1 cut(s) | 1497 |
| BmiI | GGNNCC | 1 cut(s) | 956 |
| BmrFI | CCNGG | 3 cut(s) | 1368, 1740, 1772 |
| BmsI | GCATC | 2 cut(s) | 637, 1683 |
| BpiI | GAAGAC | 2 cut(s) | 471, 1547 |
| Bpu10I | CCTNAGC | 1 cut(s) | 721 |
| BpuEI | CTTGAG | 1 cut(s) | 541 |
| BpuMI | CCSGG | 1 cut(s) | 1368 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1389 |
| BsaHI | GRCGYC | 1 cut(s) | 663 |
| BsaI | GGTCTC | 2 cut(s) | 596, 716 |
| BsaJI | CCNNGG | 3 cut(s) | 1123, 1575, 1771 |
| BsaWI | WCCGGW | 1 cut(s) | 1189 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 451, 677, 1129 |
| Bse21I | CCTNAGG | 1 cut(s) | 24 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1389 |
| BseBI | CCWGG | 2 cut(s) | 1740, 1772 |
| BseDI | CCNNGG | 3 cut(s) | 1123, 1575, 1771 |
| BseGI | GGATG | 1 cut(s) | 1698 |
| BseJI | GATNNNNATC | 1 cut(s) | 1389 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 451, 677, 1129 |
| BseMII | CTCAG | 4 cut(s) | 15, 406, 465, 735 |
| BseRI | GAGGAG | 1 cut(s) | 266 |
| BseXI | GCAGC | 7 cut(s) | 364, 777, 881, 1336, 1364, 1591, 1613 |
| BsgI | GTGCAG | 2 cut(s) | 282, 363 |
| Bsh1236I | CGCG | 1 cut(s) | 1234 |
| BshFI | GGCC | 2 cut(s) | 1580, 1793 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1327 |
| BsiSI | CCGG | 2 cut(s) | 1190, 1368 |
| BslFI | GGGAC | 2 cut(s) | 466, 1101 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 451, 677, 1129 |
| BsmAI | GTCTC | 4 cut(s) | 596, 716, 827, 1503 |
| BsmBI | CGTCTC | 1 cut(s) | 1503 |
| BsmFI | GGGAC | 2 cut(s) | 466, 1101 |
| BsmI | GAATGC | 2 cut(s) | 515, 1355 |
| BsnI | GGCC | 2 cut(s) | 1580, 1793 |
| Bso31I | GGTCTC | 2 cut(s) | 596, 716 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1327 |
| Bsp1407I | TGTACA | 1 cut(s) | 1310 |
| Bsp143I | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| BspACI | CCGC | 7 cut(s) | 174, 350, 375, 763, 1130, 1232, 1581 |
| BspANI | GGCC | 2 cut(s) | 1580, 1793 |
| BspCNI | CTCAG | 4 cut(s) | 16, 405, 466, 734 |
| BspFNI | CGCG | 1 cut(s) | 1234 |
| BspLI | GGNNCC | 1 cut(s) | 956 |
| BspMAI | CTGCAG | 1 cut(s) | 1354 |
| BspMI | ACCTGC | 1 cut(s) | 254 |
| BspPI | GGATC | 2 cut(s) | 734, 1385 |
| BspTNI | GGTCTC | 2 cut(s) | 596, 716 |
| BsrBI | CCGCTC | 1 cut(s) | 352 |
| BsrGI | TGTACA | 1 cut(s) | 1310 |
| BssECI | CCNNGG | 3 cut(s) | 1123, 1575, 1771 |
| BssMI | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| BssNI | GRCGYC | 1 cut(s) | 663 |
| Bst2UI | CCWGG | 2 cut(s) | 1740, 1772 |
| Bst4CI | ACNGT | 4 cut(s) | 67, 566, 1315, 1363 |
| Bst6I | CTCTTC | 1 cut(s) | 804 |
| BstACI | GRCGYC | 1 cut(s) | 663 |
| BstAUI | TGTACA | 1 cut(s) | 1310 |
| BstC8I | GCNNGC | 2 cut(s) | 424, 533 |
| BstDEI | CTNAG | 5 cut(s) | 24, 392, 474, 721, 1248 |
| BstDSI | CCRYGG | 2 cut(s) | 1123, 1575 |
| BstF5I | GGATG | 1 cut(s) | 1698 |
| BstFNI | CGCG | 1 cut(s) | 1234 |
| BstKTI | GATC | 4 cut(s) | 729, 1198, 1393, 1719 |
| BstMAI | GTCTC | 4 cut(s) | 596, 716, 827, 1503 |
| BstMBI | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 86, 1601 |
| BstNI | CCWGG | 2 cut(s) | 1740, 1772 |
| BstNSI | RCATGY | 3 cut(s) | 504, 790, 1013 |
| BstSCI | CCNGG | 3 cut(s) | 1366, 1738, 1770 |
| BstSFI | CTRYAG | 1 cut(s) | 1350 |
| BstUI | CGCG | 1 cut(s) | 1234 |
| BstV1I | GCAGC | 7 cut(s) | 364, 777, 881, 1336, 1364, 1591, 1613 |
| BstV2I | GAAGAC | 2 cut(s) | 471, 1547 |
| BstX2I | RGATCY | 2 cut(s) | 1195, 1716 |
| BstYI | RGATCY | 2 cut(s) | 1195, 1716 |
| Bsu36I | CCTNAGG | 1 cut(s) | 24 |
| BsuI | GTATCC | 2 cut(s) | 1130, 1679 |
| BsuRI | GGCC | 2 cut(s) | 1580, 1793 |
| BtgI | CCRYGG | 2 cut(s) | 1123, 1575 |
| BtrI | CACGTC | 1 cut(s) | 1497 |
| BtsCI | GGATG | 1 cut(s) | 1698 |
| BtsI | GCAGTG | 1 cut(s) | 633 |
| BtsIMutI | CAGTG | 1 cut(s) | 633 |
| BveI | ACCTGC | 1 cut(s) | 254 |
| Cac8I | GCNNGC | 2 cut(s) | 424, 533 |
| CseI | GACGC | 1 cut(s) | 1448 |
| Csp6I | GTAC | 3 cut(s) | 504, 1311, 1397 |
| CviAII | CATG | 9 cut(s) | 371, 501, 758, 787, 1010, 1220, 1339, 1585, 1635 |
| CviQI | GTAC | 3 cut(s) | 504, 1311, 1397 |
| DdeI | CTNAG | 5 cut(s) | 24, 392, 474, 721, 1248 |
| DpnI | GATC | 4 cut(s) | 728, 1197, 1392, 1718 |
| DpnII | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| EaeI | YGGCCR | 1 cut(s) | 1578 |
| Eam1104I | CTCTTC | 1 cut(s) | 804 |
| EarI | CTCTTC | 1 cut(s) | 804 |
| Eco147I | AGGCCT | 1 cut(s) | 1793 |
| Eco31I | GGTCTC | 2 cut(s) | 596, 716 |
| Eco57I | CTGAAG | 2 cut(s) | 483, 1452 |
| Eco81I | CCTNAGG | 1 cut(s) | 24 |
| EcoRI | GAATTC | 1 cut(s) | 1488 |
| EcoRII | CCWGG | 2 cut(s) | 1738, 1770 |
| Esp3I | CGTCTC | 1 cut(s) | 1503 |
| FaeI | CATG | 9 cut(s) | 374, 504, 761, 790, 1013, 1223, 1342, 1588, 1638 |
| FaqI | GGGAC | 2 cut(s) | 466, 1101 |
| FatI | CATG | 9 cut(s) | 370, 500, 757, 786, 1009, 1219, 1338, 1584, 1634 |
| FauNDI | CATATG | 2 cut(s) | 744, 1080 |
| FokI | GGATG | 1 cut(s) | 1705 |
| FspBI | CTAG | 2 cut(s) | 582, 1185 |
| HaeIII | GGCC | 2 cut(s) | 1580, 1793 |
| HapII | CCGG | 2 cut(s) | 1190, 1368 |
| HgaI | GACGC | 1 cut(s) | 1448 |
| Hin1I | GRCGYC | 1 cut(s) | 663 |
| Hin1II | CATG | 9 cut(s) | 374, 504, 761, 790, 1013, 1223, 1342, 1588, 1638 |
| HincII | GTYRAC | 2 cut(s) | 1017, 1210 |
| HindII | GTYRAC | 2 cut(s) | 1017, 1210 |
| HindIII | AAGCTT | 2 cut(s) | 297, 448 |
| HinfI | GANTC | 3 cut(s) | 898, 1252, 1631 |
| HpaI | GTTAAC | 1 cut(s) | 1210 |
| HpaII | CCGG | 2 cut(s) | 1190, 1368 |
| HphI | GGTGA | 3 cut(s) | 1089, 1279, 1400 |
| Hpy166II | GTNNAC | 2 cut(s) | 1017, 1210 |
| Hpy188I | TCNGA | 2 cut(s) | 475, 1560 |
| Hpy188III | TCNNGA | 5 cut(s) | 520, 595, 824, 1166, 1199 |
| Hpy8I | GTNNAC | 2 cut(s) | 1017, 1210 |
| Hpy99I | CGWCG | 3 cut(s) | 59, 668, 830 |
| HpyAV | CCTTC | 4 cut(s) | 241, 519, 1264, 1404 |
| HpyCH4III | ACNGT | 4 cut(s) | 67, 566, 1315, 1363 |
| HpyCH4IV | ACGT | 3 cut(s) | 492, 663, 1496 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 86, 1601 |
| HpyF3I | CTNAG | 5 cut(s) | 24, 392, 474, 721, 1248 |
| HpySE526I | ACGT | 3 cut(s) | 492, 663, 1496 |
| Hsp92I | GRCGYC | 1 cut(s) | 663 |
| Hsp92II | CATG | 9 cut(s) | 374, 504, 761, 790, 1013, 1223, 1342, 1588, 1638 |
| KspAI | GTTAAC | 1 cut(s) | 1210 |
| Kzo9I | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| Lsp1109I | GCAGC | 7 cut(s) | 364, 777, 881, 1336, 1364, 1591, 1613 |
| LweI | GCATC | 2 cut(s) | 637, 1683 |
| MaeI | CTAG | 2 cut(s) | 582, 1185 |
| MaeII | ACGT | 3 cut(s) | 492, 663, 1496 |
| MaeIII | GTNAC | 3 cut(s) | 343, 1333, 1660 |
| MalI | GATC | 4 cut(s) | 728, 1197, 1392, 1718 |
| MbiI | CCGCTC | 1 cut(s) | 352 |
| MboI | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| MboII | GAAGA | 7 cut(s) | 476, 821, 1205, 1391, 1523, 1526, 1547 |
| MfeI | CAATTG | 1 cut(s) | 1674 |
| MflI | RGATCY | 2 cut(s) | 1195, 1716 |
| MhlI | GDGCHC | 1 cut(s) | 1327 |
| MlyI | GAGTC | 2 cut(s) | 892, 1625 |
| MmeI | TCCRAC | 3 cut(s) | 71, 695, 1152 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1518 |
| MseI | TTAA | 8 cut(s) | 257, 306, 431, 915, 999, 1209, 1766, 1788 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1687 |
| MspA1I | CMGCKG | 2 cut(s) | 377, 1604 |
| MspI | CCGG | 2 cut(s) | 1190, 1368 |
| MspR9I | CCNGG | 3 cut(s) | 1368, 1740, 1772 |
| MunI | CAATTG | 1 cut(s) | 1674 |
| Mva1269I | GAATGC | 2 cut(s) | 515, 1355 |
| MvaI | CCWGG | 2 cut(s) | 1740, 1772 |
| MvnI | CGCG | 1 cut(s) | 1234 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 86, 1601 |
| NciI | CCSGG | 1 cut(s) | 1368 |
| NdeI | CATATG | 2 cut(s) | 744, 1080 |
| NdeII | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| NlaIII | CATG | 9 cut(s) | 374, 504, 761, 790, 1013, 1223, 1342, 1588, 1638 |
| NlaIV | GGNNCC | 1 cut(s) | 956 |
| NmuCI | GTSAC | 1 cut(s) | 343 |
| NspI | RCATGY | 3 cut(s) | 504, 790, 1013 |
| PaqCI | CACCTGC | 1 cut(s) | 254 |
| PceI | AGGCCT | 1 cut(s) | 1793 |
| PctI | GAATGC | 2 cut(s) | 515, 1355 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1518 |
| PfeI | GAWTC | 1 cut(s) | 1252 |
| PleI | GAGTC | 2 cut(s) | 892, 1625 |
| PpsI | GAGTC | 2 cut(s) | 892, 1625 |
| PsiI | TTATAA | 1 cut(s) | 699 |
| Psp6I | CCWGG | 2 cut(s) | 1738, 1770 |
| PspGI | CCWGG | 2 cut(s) | 1738, 1770 |
| PspN4I | GGNNCC | 1 cut(s) | 956 |
| PstI | CTGCAG | 1 cut(s) | 1354 |
| PsuI | RGATCY | 2 cut(s) | 1195, 1716 |
| PvuII | CAGCTG | 1 cut(s) | 1604 |
| RsaI | GTAC | 3 cut(s) | 505, 1312, 1398 |
| RsaNI | GTAC | 3 cut(s) | 504, 1311, 1397 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1687 |
| SaqAI | TTAA | 8 cut(s) | 257, 306, 431, 915, 999, 1209, 1766, 1788 |
| Sau3AI | GATC | 4 cut(s) | 726, 1195, 1390, 1716 |
| SchI | GAGTC | 2 cut(s) | 892, 1625 |
| ScrFI | CCNGG | 3 cut(s) | 1368, 1740, 1772 |
| SduI | GDGCHC | 1 cut(s) | 1327 |
| SfaNI | GCATC | 2 cut(s) | 637, 1683 |
| SfcI | CTRYAG | 1 cut(s) | 1350 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1687 |
| SmlI | CTYRAG | 1 cut(s) | 520 |
| SmoI | CTYRAG | 1 cut(s) | 520 |
| SseBI | AGGCCT | 1 cut(s) | 1793 |
| SsiI | CCGC | 7 cut(s) | 174, 350, 375, 763, 1130, 1232, 1581 |
| SspI | AATATT | 1 cut(s) | 1746 |
| SspMI | CTAG | 2 cut(s) | 582, 1185 |
| StuI | AGGCCT | 1 cut(s) | 1793 |
| StyD4I | CCNGG | 3 cut(s) | 1366, 1738, 1770 |
| TaaI | ACNGT | 4 cut(s) | 67, 566, 1315, 1363 |
| TaiI | ACGT | 3 cut(s) | 495, 666, 1499 |
| TaqI | TCGA | 8 cut(s) | 12, 219, 273, 294, 825, 975, 1286, 1537 |
| TatI | WGTACW | 2 cut(s) | 1310, 1396 |
| TauI | GCSGC | 3 cut(s) | 377, 1133, 1583 |
| TfiI | GAWTC | 1 cut(s) | 1252 |
| Tru1I | TTAA | 8 cut(s) | 257, 306, 431, 915, 999, 1209, 1766, 1788 |
| Tru9I | TTAA | 8 cut(s) | 257, 306, 431, 915, 999, 1209, 1766, 1788 |
| TscAI | CASTG | 1 cut(s) | 640 |
| TseFI | GTSAC | 1 cut(s) | 343 |
| TseI | GCWGC | 7 cut(s) | 377, 765, 869, 1349, 1352, 1601, 1604 |
| Tsp45I | GTSAC | 1 cut(s) | 343 |
| TspDTI | ATGAA | 8 cut(s) | 17, 177, 225, 761, 830, 1241, 1304, 1392 |
| TspGWI | ACGGA | 2 cut(s) | 1112, 1564 |
| TspRI | CASTG | 1 cut(s) | 640 |
| XapI | RAATTY | 3 cut(s) | 539, 842, 1488 |
| XceI | RCATGY | 3 cut(s) | 504, 790, 1013 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1518 |
| XspI | CTAG | 2 cut(s) | 582, 1185 |
| ZraI | GACGTC | 1 cut(s) | 664 |