protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 1 - 111 | 8.3e-25 | Domain of unknown function |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 466 |
| AcsI | RAATTY | 1 cut(s) | 113 |
| AcuI | CTGAAG | 1 cut(s) | 168 |
| AfaI | GTAC | 1 cut(s) | 25 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjiI | CACGTC | 1 cut(s) | 213 |
| AluBI | AGCT | 1 cut(s) | 14 |
| AluI | AGCT | 1 cut(s) | 14 |
| Alw21I | GWGCWC | 1 cut(s) | 40 |
| AoxI | GGCC | 2 cut(s) | 129, 321 |
| ApeKI | GCWGC | 3 cut(s) | 62, 65, 296 |
| ApoI | RAATTY | 1 cut(s) | 113 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 234 |
| AspS9I | GGNCC | 2 cut(s) | 129, 322 |
| AsuC2I | CCSGG | 1 cut(s) | 81 |
| BauI | CACGAG | 1 cut(s) | 425 |
| BbsI | GAAGAC | 2 cut(s) | 102, 263 |
| Bbv12I | GWGCWC | 1 cut(s) | 40 |
| BbvI | GCAGC | 3 cut(s) | 49, 77, 283 |
| BccI | CCATC | 1 cut(s) | 95 |
| BcnI | CCSGG | 1 cut(s) | 81 |
| BfaI | CTAG | 1 cut(s) | 200 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| BisI | GCNGC | 3 cut(s) | 63, 66, 297 |
| BlsI | GCNGC | 3 cut(s) | 64, 67, 298 |
| Bme1390I | CCNGG | 1 cut(s) | 81 |
| BmgBI | CACGTC | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 2 cut(s) | 129, 322 |
| BmrFI | CCNGG | 1 cut(s) | 81 |
| BmsI | GCATC | 2 cut(s) | 399, 505 |
| BpiI | GAAGAC | 2 cut(s) | 102, 263 |
| BpuMI | CCSGG | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 3 cut(s) | 291, 318, 493 |
| Bse1I | ACTGG | 1 cut(s) | 385 |
| BseDI | CCNNGG | 3 cut(s) | 291, 318, 493 |
| BseGI | GGATG | 1 cut(s) | 414 |
| BseNI | ACTGG | 1 cut(s) | 385 |
| BseXI | GCAGC | 3 cut(s) | 49, 77, 283 |
| BshFI | GGCC | 2 cut(s) | 131, 323 |
| BsiHKAI | GWGCWC | 1 cut(s) | 40 |
| BsiSI | CCGG | 1 cut(s) | 81 |
| BsmI | GAATGC | 1 cut(s) | 68 |
| BsnI | GGCC | 2 cut(s) | 131, 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 40 |
| Bsp1407I | TGTACA | 1 cut(s) | 23 |
| Bsp143I | GATC | 1 cut(s) | 306 |
| BspACI | CCGC | 1 cut(s) | 466 |
| BspANI | GGCC | 2 cut(s) | 131, 323 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BsrGI | TGTACA | 1 cut(s) | 23 |
| BsrI | ACTGG | 1 cut(s) | 385 |
| BssECI | CCNNGG | 3 cut(s) | 291, 318, 493 |
| BssMI | GATC | 1 cut(s) | 306 |
| BssSI | CACGAG | 1 cut(s) | 425 |
| BssT1I | CCWWGG | 1 cut(s) | 493 |
| Bst2BI | CACGAG | 1 cut(s) | 425 |
| Bst4CI | ACNGT | 2 cut(s) | 28, 76 |
| Bst6I | CTCTTC | 1 cut(s) | 493 |
| BstAUI | TGTACA | 1 cut(s) | 23 |
| BstDSI | CCRYGG | 1 cut(s) | 291 |
| BstF5I | GGATG | 1 cut(s) | 414 |
| BstKTI | GATC | 1 cut(s) | 309 |
| BstMBI | GATC | 1 cut(s) | 306 |
| BstNSI | RCATGY | 1 cut(s) | 36 |
| BstSCI | CCNGG | 1 cut(s) | 79 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 3 cut(s) | 49, 77, 283 |
| BstV2I | GAAGAC | 2 cut(s) | 102, 263 |
| BsuRI | GGCC | 2 cut(s) | 131, 323 |
| BtgI | CCRYGG | 1 cut(s) | 291 |
| BtrI | CACGTC | 1 cut(s) | 213 |
| BtsCI | GGATG | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 2 cut(s) | 129, 322 |
| CseI | GACGC | 1 cut(s) | 164 |
| Csp6I | GTAC | 1 cut(s) | 24 |
| CviAII | CATG | 4 cut(s) | 33, 52, 301, 351 |
| CviJI | RGCY | 4 cut(s) | 14, 131, 296, 323 |
| CviKI_1 | RGCY | 4 cut(s) | 14, 131, 296, 323 |
| CviQI | GTAC | 1 cut(s) | 24 |
| DpnI | GATC | 1 cut(s) | 308 |
| DpnII | GATC | 1 cut(s) | 306 |
| Eam1104I | CTCTTC | 1 cut(s) | 493 |
| EarI | CTCTTC | 1 cut(s) | 493 |
| Eco130I | CCWWGG | 1 cut(s) | 493 |
| Eco57I | CTGAAG | 1 cut(s) | 168 |
| EcoO109I | RGGNCCY | 1 cut(s) | 129 |
| EcoT14I | CCWWGG | 1 cut(s) | 493 |
| ErhI | CCWWGG | 1 cut(s) | 493 |
| FaeI | CATG | 4 cut(s) | 36, 55, 304, 354 |
| FatI | CATG | 4 cut(s) | 32, 51, 300, 350 |
| Fnu4HI | GCNGC | 3 cut(s) | 63, 66, 297 |
| FokI | GGATG | 1 cut(s) | 421 |
| Fsp4HI | GCNGC | 3 cut(s) | 63, 66, 297 |
| FspBI | CTAG | 1 cut(s) | 200 |
| GluI | GCNGC | 3 cut(s) | 63, 66, 297 |
| HaeIII | GGCC | 2 cut(s) | 131, 323 |
| HapII | CCGG | 1 cut(s) | 81 |
| HgaI | GACGC | 1 cut(s) | 164 |
| Hin1II | CATG | 4 cut(s) | 36, 55, 304, 354 |
| HinfI | GANTC | 1 cut(s) | 347 |
| HpaII | CCGG | 1 cut(s) | 81 |
| Hpy188I | TCNGA | 1 cut(s) | 276 |
| Hpy188III | TCNNGA | 1 cut(s) | 118 |
| HpyCH4III | ACNGT | 2 cut(s) | 28, 76 |
| HpyCH4IV | ACGT | 2 cut(s) | 212, 217 |
| HpyCH4V | TGCA | 5 cut(s) | 32, 65, 152, 224, 412 |
| HpySE526I | ACGT | 2 cut(s) | 212, 217 |
| Hsp92II | CATG | 4 cut(s) | 36, 55, 304, 354 |
| Kzo9I | GATC | 1 cut(s) | 306 |
| LpnPI | CCDG | 3 cut(s) | 94, 338, 366 |
| Lsp1109I | GCAGC | 3 cut(s) | 49, 77, 283 |
| LweI | GCATC | 2 cut(s) | 399, 505 |
| MaeI | CTAG | 1 cut(s) | 200 |
| MaeII | ACGT | 2 cut(s) | 212, 217 |
| MaeIII | GTNAC | 2 cut(s) | 46, 213 |
| MalI | GATC | 1 cut(s) | 308 |
| MboI | GATC | 1 cut(s) | 306 |
| MboII | GAAGA | 6 cut(s) | 107, 239, 242, 263, 435, 510 |
| MfeI | CAATTG | 1 cut(s) | 390 |
| MhlI | GDGCHC | 1 cut(s) | 40 |
| MluCI | AATT | 4 cut(s) | 113, 390, 413, 485 |
| MlyI | GAGTC | 1 cut(s) | 341 |
| MnlI | CCTC | 4 cut(s) | 28, 261, 328, 406 |
| MroXI | GAANNNNTTC | 1 cut(s) | 234 |
| MseI | TTAA | 1 cut(s) | 488 |
| MslI | CAYNNNNRTG | 1 cut(s) | 403 |
| MspI | CCGG | 1 cut(s) | 81 |
| MspR9I | CCNGG | 1 cut(s) | 81 |
| MunI | CAATTG | 1 cut(s) | 390 |
| Mva1269I | GAATGC | 1 cut(s) | 68 |
| NciI | CCSGG | 1 cut(s) | 81 |
| NdeII | GATC | 1 cut(s) | 306 |
| NlaIII | CATG | 4 cut(s) | 36, 55, 304, 354 |
| NmeAIII | GCCGAG | 1 cut(s) | 299 |
| NmuCI | GTSAC | 1 cut(s) | 213 |
| NspI | RCATGY | 1 cut(s) | 36 |
| PctI | GAATGC | 1 cut(s) | 68 |
| PdmI | GAANNNNTTC | 1 cut(s) | 234 |
| PkrI | GCNGC | 3 cut(s) | 64, 67, 298 |
| PleI | GAGTC | 1 cut(s) | 341 |
| PpsI | GAGTC | 1 cut(s) | 341 |
| PspPI | GGNCC | 2 cut(s) | 129, 322 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| RsaI | GTAC | 1 cut(s) | 25 |
| RsaNI | GTAC | 1 cut(s) | 24 |
| RseI | CAYNNNNRTG | 1 cut(s) | 403 |
| SaqAI | TTAA | 1 cut(s) | 488 |
| SatI | GCNGC | 3 cut(s) | 63, 66, 297 |
| Sau3AI | GATC | 1 cut(s) | 306 |
| Sau96I | GGNCC | 2 cut(s) | 129, 322 |
| SchI | GAGTC | 1 cut(s) | 341 |
| ScrFI | CCNGG | 1 cut(s) | 81 |
| SduI | GDGCHC | 1 cut(s) | 40 |
| SetI | ASST | 6 cut(s) | 16, 20, 215, 220, 320, 495 |
| SfaNI | GCATC | 2 cut(s) | 399, 505 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 403 |
| Sse9I | AATT | 4 cut(s) | 113, 390, 413, 485 |
| SsiI | CCGC | 1 cut(s) | 466 |
| SspMI | CTAG | 1 cut(s) | 200 |
| StyD4I | CCNGG | 1 cut(s) | 79 |
| StyI | CCWWGG | 1 cut(s) | 493 |
| TaaI | ACNGT | 2 cut(s) | 28, 76 |
| TaiI | ACGT | 2 cut(s) | 215, 220 |
| TaqI | TCGA | 1 cut(s) | 253 |
| TasI | AATT | 4 cut(s) | 113, 390, 413, 485 |
| TatI | WGTACW | 1 cut(s) | 23 |
| Tru1I | TTAA | 1 cut(s) | 488 |
| Tru9I | TTAA | 1 cut(s) | 488 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseFI | GTSAC | 1 cut(s) | 213 |
| TseI | GCWGC | 3 cut(s) | 62, 65, 296 |
| Tsp45I | GTSAC | 1 cut(s) | 213 |
| TspDTI | ATGAA | 2 cut(s) | 17, 108 |
| TspGWI | ACGGA | 1 cut(s) | 280 |
| TspRI | CASTG | 1 cut(s) | 385 |
| XapI | RAATTY | 1 cut(s) | 113 |
| XceI | RCATGY | 1 cut(s) | 36 |
| XmnI | GAANNNNTTC | 1 cut(s) | 234 |
| XspI | CTAG | 1 cut(s) | 200 |