Rw1G010470

Domain of unknown function

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
23431105 .. 23439151
8047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010470.1

Sequence Viewer

Length: 2085 bp
ATGGCAGAGACAGTGAGCGCAAGTGCAATAGTTCTTCAAGTCCTGGGCAGAGAAAACTATGAGGATTGGAGTGTACGGGTCAGAACCTATTTGATGGCAAAAGACCTTTGGGATGTGGTTGAAGCCCGTGGTGAACCACCTAAACCTGAGAAGGGTGAAGCTAAGTATAAGACCTGGAGGAAAAACAATGCAGAGGCTCTGCATGCAATTCAAATCTCTTGCGGTCCTGATACATTTCCTTTGATTCGTGACAAAATCACGGCAAAAACTGCGTGGAACACTTTGGTAGCCGAGTTCAAGCCAGATTTACAGAAAACTCCAGGAAATGCCAACAACTTTCATCAATATGAAGCTCTCTTTAGAGCTGTGAAGGATGGGGACTGCAACGCCACTAATGAGTTTCTTGAAAAAAATAAGAATGCAGTGAGTGCCCGAATTACTTATTTAGGGAAAACAGCTCTCCACACCGCAGCCGATGCCGGGCAGACAAAAATAGTGGAATTATTGGTGAAAAAGATGAGAAAGGAAGACTTGGTGATACAAGGGAATGATGGCAAGACTGCTCTTGTTGTTGCTATAAATAGAGGAGACATGGAAATGGTTAAATGCATGGTTAGAAAGAACAAAAATGTCGTTCGCATTCTTGATCGTTCCAACAGACTTCCTGTTGTCTTGGCTTATCGAAATAGCTTTTGGGAAATAGCTAGGTATCTCTATTCTATTACTCCACCGGAAGATTTAAATGGCTCTATTAATGGCGCAACACTAGTTTCTCAATGTTTTTATGCACAACAATATGATATTGCGTGGAATCTAATTCACCGGTGCCCAAGCTTAATCACTACTAAAGACCTCTTTGAGGAATCTCCATTATTTGCATTGGCTTCTGTCCCTTCTGCATTCCCGAGTGGCACGCCACTAATATTCTGGAAAAAGTGGATCTATAACTATGAGGCTAACAATATCAACACCAACAATAATAACACCACCGCCACTTCAACATCATCATCGTCATCTACATTTCACAAGAATTTCATATGCTCAGGAATCAACCACATATATAGAATGAAACTAGTTCATAACCGATCTAGTGAATTTCTTAAATACATGTGTGAAAGGATAAAGAGTTTGAACGACGAACAAATGAAAGATGGAGTTGTACAATCATCAGTCTTACGAGCTGTCGAGAGAGGAATTCCTGAGTTTGTTAAATCCATATGTAATGCGAATCGAGAACTTGCTCGAAGCACTAACGAAATGGGACGCAGCATATTTCACTATGCCATTGAATGTCGACAAGAAAAAGTTTACAACCTTATTTATGGGCATGACATGAGAAATGCGATTTCAAGTCTTACAGACGCGTATAATAATAACATGTTACATATGGCAGCATTGTTGTCTCCATTTGCACAGCTCAATCGGATTCCAAGTGCAGCTTTACAAATGCAAAGAGAATTACAATGGTTCAAGGAGGTGGAGACTGTTGTAGCTCCCAAGGCCCGTGAGTTCATAAATTGGACCGATTATATGACACCACGGGATCTATTTACAAAACATCACAGAAATTTGTTGAAGGAAGGAGAAAAATGGATGAAAGATACCGCAACTTCTTTTACAGTGGTCGGGGCTCTTATTGTTACCCTCATGTTTGCCACAGCATTTACAATTCCTGGAGGATATAAAGGAGATACAGGTTTTCCAATATTCATAAATGAAAGATTGTTTATGGTATTTATAATTTCAGATGCCATTTCACTATTTTCAGCTACAACTTCGTCATTGATGTTTTTGGGAATCCTCACTTCACGTTATGCAGAAGATGATTTTCTCAAATTTCTACCCACAAAGATGATAATAGGGCTATTCACCCTTTTTTTCTCCATTGCAACCATGATGATAGCATTTTCTGCCGCCCTGCTTCTTATACTTAAAGAAAAACCATGGACTACCACTCCAATTATTTTGTTATCTTGTGTTCCAGTTACCTTATTCGCTGCTATAAAAATTCCTCTTCTTGTTGAAATTCTTCTTTCTACGTACGGACGAGGAATATTTGATAAGAATGTCGAAAAATGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

694

Amino Acids

78.69

Weight (kDa)

9.04

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 15 - 41 3.8e-09 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 27 - 101 3.5e-11 gag-polypeptide of LTR copia-type
Ank_2 PF12796 114 - 172 2.1e-06 Ankyrin repeats (3 copies)
PGG PF13962 529 - 641 8.1e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1739
AccB1I GGYRCC 1 cut(s) 825
AccI GTMKAC 1 cut(s) 1294
AccII CGCG 1 cut(s) 1364
AciI CCGC 5 cut(s) 222, 468, 990, 1605, 1914
AclWI GGATC 2 cut(s) 947, 1551
AcsI RAATTY 7 cut(s) 1030, 1094, 1194, 1567, 1835, 2007, 2025
AfaI GTAC 3 cut(s) 75, 1161, 2042
AfiI CCNNNNNNNGG 3 cut(s) 152, 480, 859
AflIII ACRYGT 3 cut(s) 1107, 1362, 1377
AgeI ACCGGT 1 cut(s) 822
AhlI ACTAGT 2 cut(s) 766, 1072
AjnI CCWGG 4 cut(s) 42, 173, 319, 1672
AjuI GAANNNNNNNTTGG 2 cut(s) 676, 708
Alw26I GTCTC 4 cut(s) 2, 582, 1407, 1475
AlwI GGATC 2 cut(s) 947, 1551
Ama87I CYCGRG 1 cut(s) 904
AoxI GGCC 1 cut(s) 1500
ApeKI GCWGC 5 cut(s) 470, 1266, 1391, 1436, 1997
ApoI RAATTY 7 cut(s) 1030, 1094, 1194, 1567, 1835, 2007, 2025
AseI ATTAAT 1 cut(s) 753
AsiGI ACCGGT 1 cut(s) 822
Asp700I GAANNNNTTC 1 cut(s) 2028
AspLEI GCGC 2 cut(s) 20, 761
AspS9I GGNCC 3 cut(s) 224, 1501, 1521
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 6 cut(s) 143, 167, 520, 547, 812, 1861
AvaI CYCGRG 1 cut(s) 904
AvaII GGWCC 2 cut(s) 224, 1521
BaeGI GKGCMC 2 cut(s) 433, 830
BanI GGYRCC 1 cut(s) 825
BanII GRGCYC 1 cut(s) 1633
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 5 cut(s) 482, 1278, 1403, 1448, 1984
BccI CCATC 4 cut(s) 88, 368, 545, 1145
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 4 cut(s) 44, 175, 321, 1674
BcnI CCSGG 1 cut(s) 481
BcoDI GTCTC 4 cut(s) 2, 582, 1407, 1475
BcuI ACTAGT 2 cut(s) 766, 1072
BfaI CTAG 4 cut(s) 705, 767, 1073, 1089
BisI GCNGC 6 cut(s) 471, 1267, 1392, 1437, 1914, 1998
BlsI GCNGC 6 cut(s) 472, 1268, 1393, 1438, 1915, 1999
Bme1390I CCNGG 5 cut(s) 44, 175, 321, 481, 1674
Bme18I GGWCC 2 cut(s) 224, 1521
BmeT110I CYCGRG 1 cut(s) 904
BmgT120I GGNCC 3 cut(s) 224, 1501, 1521
BmiI GGNNCC 1 cut(s) 827
BmrFI CCNGG 5 cut(s) 44, 175, 321, 481, 1674
BmsI GCATC 2 cut(s) 466, 1738
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 3 cut(s) 196, 303, 1695
Bpu10I CCTNAGC 1 cut(s) 1042
BpuMI CCSGG 1 cut(s) 481
BsaAI YACGTR 1 cut(s) 2040
BsaJI CCNNGG 5 cut(s) 43, 127, 1497, 1538, 1943
BsaWI WCCGGW 2 cut(s) 730, 822
BsaXI ACNNNNNCTCC 2 cut(s) 1939, 1969
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 480, 859
Bse118I RCCGGY 1 cut(s) 822
Bse1I ACTGG 1 cut(s) 1982
Bse3DI GCAATG 1 cut(s) 1884
BseBI CCWGG 4 cut(s) 44, 175, 321, 1674
BseDI CCNNGG 5 cut(s) 43, 127, 1497, 1538, 1943
BseGI GGATG 3 cut(s) 118, 379, 1599
BseLI CCNNNNNNNGG 3 cut(s) 152, 480, 859
BseMI GCAATG 1 cut(s) 1884
BseMII CTCAG 3 cut(s) 138, 1056, 1191
BseNI ACTGG 1 cut(s) 1982
BseRI GAGGAG 1 cut(s) 600
BseSI GKGCMC 2 cut(s) 433, 830
BseXI GCAGC 5 cut(s) 482, 1278, 1403, 1448, 1984
BsgI GTGCAG 1 cut(s) 1455
Bsh1236I CGCG 1 cut(s) 1364
BshFI GGCC 1 cut(s) 1502
BshNI GGYRCC 1 cut(s) 825
BshTI ACCGGT 1 cut(s) 822
BsiHKCI CYCGRG 1 cut(s) 904
BsiSI CCGG 3 cut(s) 480, 731, 823
BsiWI CGTACG 1 cut(s) 2040
BslFI GGGAC 3 cut(s) 392, 875, 1275
BslI CCNNNNNNNGG 3 cut(s) 152, 480, 859
BsmAI GTCTC 4 cut(s) 2, 582, 1407, 1475
BsmFI GGGAC 3 cut(s) 392, 875, 1275
BsmI GAATGC 3 cut(s) 424, 639, 899
BsnI GGCC 1 cut(s) 1502
BsoBI CYCGRG 1 cut(s) 904
Bsp1286I GDGCHC 3 cut(s) 433, 830, 1633
Bsp1407I TGTACA 1 cut(s) 1159
Bsp143I GATC 4 cut(s) 646, 939, 1085, 1543
Bsp19I CCATGG 1 cut(s) 1943
BspACI CCGC 5 cut(s) 222, 468, 990, 1605, 1914
BspANI GGCC 1 cut(s) 1502
BspCNI CTCAG 3 cut(s) 139, 1055, 1192
BspFNI CGCG 1 cut(s) 1364
BspLI GGNNCC 1 cut(s) 827
BspPI GGATC 2 cut(s) 947, 1551
BspT107I GGYRCC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 1884
BsrFI RCCGGY 1 cut(s) 822
BsrGI TGTACA 1 cut(s) 1159
BsrI ACTGG 1 cut(s) 1982
BssAI RCCGGY 1 cut(s) 822
BssECI CCNNGG 5 cut(s) 43, 127, 1497, 1538, 1943
BssMI GATC 4 cut(s) 646, 939, 1085, 1543
BssT1I CCWWGG 2 cut(s) 1497, 1943
Bst2UI CCWGG 4 cut(s) 44, 175, 321, 1674
Bst4CI ACNGT 3 cut(s) 13, 1486, 1621
Bst6I CTCTTC 1 cut(s) 2019
BstAPI GCANNNNNTGC 4 cut(s) 269, 428, 476, 1910
BstAUI TGTACA 1 cut(s) 1159
BstBAI YACGTR 1 cut(s) 2040
BstC8I GCNNGC 2 cut(s) 204, 914
BstDEI CTNAG 4 cut(s) 147, 162, 1042, 1200
BstDSI CCRYGG 3 cut(s) 127, 1538, 1943
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 3 cut(s) 118, 379, 1599
BstFNI CGCG 1 cut(s) 1364
BstHHI GCGC 2 cut(s) 20, 761
BstKTI GATC 4 cut(s) 649, 942, 1088, 1546
BstMAI GTCTC 4 cut(s) 2, 582, 1407, 1475
BstMBI GATC 4 cut(s) 646, 939, 1085, 1543
BstMWI GCNNNNNNNGC 6 cut(s) 203, 269, 428, 476, 1499, 1910
BstNI CCWGG 4 cut(s) 44, 175, 321, 1674
BstNSI RCATGY 3 cut(s) 206, 1111, 1381
BstSCI CCNGG 5 cut(s) 42, 173, 319, 479, 1672
BstSLI GKGCMC 2 cut(s) 433, 830
BstSNI TACGTA 1 cut(s) 2040
BstUI CGCG 1 cut(s) 1364
BstV1I GCAGC 5 cut(s) 482, 1278, 1403, 1448, 1984
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 939, 1543
BstYI RGATCY 2 cut(s) 939, 1543
BsuRI GGCC 1 cut(s) 1502
BtgI CCRYGG 3 cut(s) 127, 1538, 1943
BtsCI GGATG 3 cut(s) 118, 379, 1599
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 18, 429, 1626
Cac8I GCNNGC 2 cut(s) 204, 914
CfoI GCGC 2 cut(s) 20, 761
Cfr10I RCCGGY 1 cut(s) 822
Cfr13I GGNCC 3 cut(s) 224, 1501, 1521
CseI GACGC 2 cut(s) 1272, 1370
Csp6I GTAC 3 cut(s) 74, 1160, 2041
CspAI ACCGGT 1 cut(s) 822
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviQI GTAC 3 cut(s) 74, 1160, 2041
DdeI CTNAG 4 cut(s) 147, 162, 1042, 1200
DpnI GATC 4 cut(s) 648, 941, 1087, 1545
DpnII GATC 4 cut(s) 646, 939, 1085, 1543
DraI TTTAAA 1 cut(s) 741
Eam1104I CTCTTC 1 cut(s) 2019
EarI CTCTTC 1 cut(s) 2019
Eco105I TACGTA 1 cut(s) 2040
Eco130I CCWWGG 2 cut(s) 1497, 1943
Eco24I GRGCYC 1 cut(s) 1633
Eco47I GGWCC 2 cut(s) 224, 1521
Eco88I CYCGRG 1 cut(s) 904
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 1194
EcoRII CCWGG 4 cut(s) 42, 173, 319, 1672
EcoT14I CCWWGG 2 cut(s) 1497, 1943
EcoT22I ATGCAT 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 1633
ErhI CCWWGG 2 cut(s) 1497, 1943
FalI AAGNNNNNCTT 4 cut(s) 515, 547, 1423, 1455
FaqI GGGAC 3 cut(s) 392, 875, 1275
FauNDI CATATG 3 cut(s) 1037, 1217, 1386
FblI GTMKAC 1 cut(s) 1294
Fnu4HI GCNGC 6 cut(s) 471, 1267, 1392, 1437, 1914, 1998
FokI GGATG 3 cut(s) 125, 386, 1606
FriOI GRGCYC 1 cut(s) 1633
Fsp4HI GCNGC 6 cut(s) 471, 1267, 1392, 1437, 1914, 1998
FspBI CTAG 4 cut(s) 705, 767, 1073, 1089
GlaI GCGC 2 cut(s) 19, 760
GluI GCNGC 6 cut(s) 471, 1267, 1392, 1437, 1914, 1998
GsuI CTGGAG 3 cut(s) 196, 303, 1695
HaeIII GGCC 1 cut(s) 1502
HapII CCGG 3 cut(s) 480, 731, 823
HgaI GACGC 2 cut(s) 1272, 1370
HhaI GCGC 2 cut(s) 20, 761
Hin6I GCGC 2 cut(s) 18, 759
HinP1I GCGC 2 cut(s) 18, 759
HincII GTYRAC 1 cut(s) 1295
HindII GTYRAC 1 cut(s) 1295
HindIII AAGCTT 1 cut(s) 832
HinfI GANTC 7 cut(s) 244, 811, 863, 1047, 1228, 1426, 1797
HpaII CCGG 3 cut(s) 480, 731, 823
HphI GGTGA 6 cut(s) 143, 167, 520, 547, 812, 1861
Hpy166II GTNNAC 4 cut(s) 74, 134, 1295, 1309
Hpy188I TCNGA 3 cut(s) 83, 1425, 1747
Hpy8I GTNNAC 4 cut(s) 74, 134, 1295, 1309
Hpy99I CGWCG 1 cut(s) 1139
HpyAV CCTTC 5 cut(s) 145, 364, 903, 1570, 1574
HpyCH4III ACNGT 3 cut(s) 13, 1486, 1621
HpyCH4IV ACGT 2 cut(s) 1810, 2039
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 269, 428, 476, 1499, 1910
HpyF3I CTNAG 4 cut(s) 147, 162, 1042, 1200
HpySE526I ACGT 2 cut(s) 1810, 2039
HspAI GCGC 2 cut(s) 18, 759
Kzo9I GATC 4 cut(s) 646, 939, 1085, 1543
LmnI GCTCC 1 cut(s) 1498
Lsp1109I GCAGC 5 cut(s) 482, 1278, 1403, 1448, 1984
LweI GCATC 2 cut(s) 466, 1738
MaeI CTAG 4 cut(s) 705, 767, 1073, 1089
MaeII ACGT 2 cut(s) 1810, 2039
MaeIII GTNAC 4 cut(s) 248, 1380, 1639, 1984
MalI GATC 4 cut(s) 648, 941, 1087, 1545
MboI GATC 4 cut(s) 646, 939, 1085, 1543
MboII GAAGA 6 cut(s) 26, 539, 746, 1832, 2006, 2021
MflI RGATCY 2 cut(s) 939, 1543
MhlI GDGCHC 3 cut(s) 433, 830, 1633
MluI ACGCGT 1 cut(s) 1362
MmeI TCCRAC 1 cut(s) 678
Mph1103I ATGCAT 1 cut(s) 611
MroXI GAANNNNTTC 1 cut(s) 2028
MseI TTAA 7 cut(s) 603, 740, 753, 836, 1101, 1209, 1932
MslI CAYNNNNRTG 3 cut(s) 345, 596, 1850
MspI CCGG 3 cut(s) 480, 731, 823
MspR9I CCNGG 5 cut(s) 44, 175, 321, 481, 1674
Mva1269I GAATGC 3 cut(s) 424, 639, 899
MvaI CCWGG 4 cut(s) 44, 175, 321, 1674
MvnI CGCG 1 cut(s) 1364
MwoI GCNNNNNNNGC 6 cut(s) 203, 269, 428, 476, 1499, 1910
NciI CCSGG 1 cut(s) 481
NcoI CCATGG 1 cut(s) 1943
NdeI CATATG 3 cut(s) 1037, 1217, 1386
NdeII GATC 4 cut(s) 646, 939, 1085, 1543
NlaIV GGNNCC 1 cut(s) 827
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 3 cut(s) 206, 1111, 1381
PaeI GCATGC 1 cut(s) 206
PciI ACATGT 2 cut(s) 1107, 1377
PctI GAATGC 3 cut(s) 424, 639, 899
PdmI GAANNNNTTC 1 cut(s) 2028
PfeI GAWTC 7 cut(s) 244, 811, 863, 1047, 1228, 1426, 1797
Pfl23II CGTACG 1 cut(s) 2040
PfoI TCCNGGA 2 cut(s) 319, 1672
PinAI ACCGGT 1 cut(s) 822
PkrI GCNGC 6 cut(s) 472, 1268, 1393, 1438, 1915, 1999
Ppu21I YACGTR 1 cut(s) 2040
PscI ACATGT 2 cut(s) 1107, 1377
PshBI ATTAAT 1 cut(s) 753
PsiI TTATAA 1 cut(s) 1739
Psp6I CCWGG 4 cut(s) 42, 173, 319, 1672
PspGI CCWGG 4 cut(s) 42, 173, 319, 1672
PspLI CGTACG 1 cut(s) 2040
PspN4I GGNNCC 1 cut(s) 827
PspPI GGNCC 3 cut(s) 224, 1501, 1521
PsuI RGATCY 2 cut(s) 939, 1543
RsaI GTAC 3 cut(s) 75, 1161, 2042
RsaNI GTAC 3 cut(s) 74, 1160, 2041
RseI CAYNNNNRTG 3 cut(s) 345, 596, 1850
SalI GTCGAC 1 cut(s) 1293
SaqAI TTAA 7 cut(s) 603, 740, 753, 836, 1101, 1209, 1932
SatI GCNGC 6 cut(s) 471, 1267, 1392, 1437, 1914, 1998
Sau3AI GATC 4 cut(s) 646, 939, 1085, 1543
Sau96I GGNCC 3 cut(s) 224, 1501, 1521
ScrFI CCNGG 5 cut(s) 44, 175, 321, 481, 1674
SduI GDGCHC 3 cut(s) 433, 830, 1633
SfaNI GCATC 2 cut(s) 466, 1738
SgrAI CRCCGGYG 1 cut(s) 822
SinI GGWCC 2 cut(s) 224, 1521
SmiI ATTTAAAT 1 cut(s) 741
SmiMI CAYNNNNRTG 3 cut(s) 345, 596, 1850
SnaBI TACGTA 1 cut(s) 2040
SpeI ACTAGT 2 cut(s) 766, 1072
SphI GCATGC 1 cut(s) 206
SsiI CCGC 5 cut(s) 222, 468, 990, 1605, 1914
SspI AATATT 3 cut(s) 924, 1707, 2055
SspMI CTAG 4 cut(s) 705, 767, 1073, 1089
StyD4I CCNGG 5 cut(s) 42, 173, 319, 479, 1672
StyI CCWWGG 2 cut(s) 1497, 1943
SwaI ATTTAAAT 1 cut(s) 741
TaaI ACNGT 3 cut(s) 13, 1486, 1621
TaiI ACGT 2 cut(s) 1813, 2042
TaqI TCGA 6 cut(s) 682, 1185, 1231, 1243, 1294, 2070
TaqII GACCGA 1 cut(s) 1538
TatI WGTACW 1 cut(s) 1159
TauI GCSGC 1 cut(s) 1916
TfiI GAWTC 7 cut(s) 244, 811, 863, 1047, 1228, 1426, 1797
Tru1I TTAA 7 cut(s) 603, 740, 753, 836, 1101, 1209, 1932
Tru9I TTAA 7 cut(s) 603, 740, 753, 836, 1101, 1209, 1932
TscAI CASTG 3 cut(s) 18, 429, 1626
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 5 cut(s) 470, 1266, 1391, 1436, 1997
Tsp45I GTSAC 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 2058
TspRI CASTG 3 cut(s) 18, 429, 1626
VpaK11BI GGWCC 2 cut(s) 224, 1521
VspI ATTAAT 1 cut(s) 753
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 7 cut(s) 1030, 1094, 1194, 1567, 1835, 2007, 2025
XceI RCATGY 3 cut(s) 206, 1111, 1381
XcmI CCANNNNNNNNNTGG 1 cut(s) 924
XmiI GTMKAC 1 cut(s) 1294
XmnI GAANNNNTTC 1 cut(s) 2028
XspI CTAG 4 cut(s) 705, 767, 1073, 1089
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.