protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 176 - 285 | 8.5e-24 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 237 |
| AciI | CCGC | 1 cut(s) | 256 |
| AcsI | RAATTY | 3 cut(s) | 274, 328, 874 |
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AcvI | CACGTG | 1 cut(s) | 470 |
| AfaI | GTAC | 3 cut(s) | 286, 423, 547 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 322 |
| AgsI | TTSAA | 4 cut(s) | 215, 352, 431, 1006 |
| AjnI | CCWGG | 2 cut(s) | 601, 981 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 260, 292 |
| AluBI | AGCT | 4 cut(s) | 101, 149, 391, 475 |
| AluI | AGCT | 4 cut(s) | 101, 149, 391, 475 |
| Alw21I | GWGCWC | 2 cut(s) | 477, 562 |
| AoxI | GGCC | 1 cut(s) | 979 |
| ApeKI | GCWGC | 3 cut(s) | 101, 146, 391 |
| ApoI | RAATTY | 3 cut(s) | 274, 328, 874 |
| AseI | ATTAAT | 1 cut(s) | 500 |
| AspS9I | GGNCC | 1 cut(s) | 979 |
| AsuHPI | GGTGA | 3 cut(s) | 44, 586, 875 |
| BanII | GRGCYC | 1 cut(s) | 477 |
| BauI | CACGAG | 1 cut(s) | 491 |
| BbrPI | CACGTG | 1 cut(s) | 470 |
| BbsI | GAAGAC | 2 cut(s) | 522, 620 |
| Bbv12I | GWGCWC | 2 cut(s) | 477, 562 |
| BbvI | GCAGC | 3 cut(s) | 88, 158, 378 |
| BccI | CCATC | 3 cut(s) | 253, 581, 608 |
| BceAI | ACGGC | 3 cut(s) | 282, 322, 480 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 882, 916 |
| BciT130I | CCWGG | 2 cut(s) | 603, 983 |
| BfmI | CTRYAG | 2 cut(s) | 102, 585 |
| BisI | GCNGC | 3 cut(s) | 102, 147, 392 |
| BlsI | GCNGC | 3 cut(s) | 103, 148, 393 |
| Bme1390I | CCNGG | 2 cut(s) | 603, 983 |
| BmgT120I | GGNCC | 1 cut(s) | 979 |
| BmrFI | CCNGG | 2 cut(s) | 603, 983 |
| BmsI | GCATC | 3 cut(s) | 36, 499, 926 |
| BpiI | GAAGAC | 2 cut(s) | 522, 620 |
| BsaAI | YACGTR | 1 cut(s) | 470 |
| BsaBI | GATNNNNATC | 1 cut(s) | 665 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 322 |
| Bse1I | ACTGG | 1 cut(s) | 425 |
| Bse3DI | GCAATG | 3 cut(s) | 74, 401, 965 |
| Bse8I | GATNNNNATC | 1 cut(s) | 665 |
| BseBI | CCWGG | 2 cut(s) | 603, 983 |
| BseGI | GGATG | 6 cut(s) | 184, 264, 287, 514, 888, 941 |
| BseJI | GATNNNNATC | 1 cut(s) | 665 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 322 |
| BseMI | GCAATG | 3 cut(s) | 74, 401, 965 |
| BseMII | CTCAG | 1 cut(s) | 720 |
| BseNI | ACTGG | 1 cut(s) | 425 |
| BseRI | GAGGAG | 1 cut(s) | 719 |
| BseXI | GCAGC | 3 cut(s) | 88, 158, 378 |
| BsgI | GTGCAG | 1 cut(s) | 165 |
| Bsh1285I | CGRYCG | 2 cut(s) | 861, 920 |
| BshFI | GGCC | 1 cut(s) | 981 |
| BsiEI | CGRYCG | 2 cut(s) | 861, 920 |
| BsiHKAI | GWGCWC | 2 cut(s) | 477, 562 |
| BslFI | GGGAC | 1 cut(s) | 738 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 322 |
| BsmFI | GGGAC | 1 cut(s) | 738 |
| BsmI | GAATGC | 1 cut(s) | 590 |
| BsnI | GGCC | 1 cut(s) | 981 |
| Bsp1286I | GDGCHC | 2 cut(s) | 477, 562 |
| Bsp1407I | TGTACA | 1 cut(s) | 545 |
| Bsp143I | GATC | 4 cut(s) | 786, 828, 858, 917 |
| BspACI | CCGC | 1 cut(s) | 256 |
| BspANI | GGCC | 1 cut(s) | 981 |
| BspCNI | CTCAG | 1 cut(s) | 719 |
| BspMAI | CTGCAG | 1 cut(s) | 106 |
| BsrDI | GCAATG | 3 cut(s) | 74, 401, 965 |
| BsrGI | TGTACA | 1 cut(s) | 545 |
| BsrI | ACTGG | 1 cut(s) | 425 |
| BssMI | GATC | 4 cut(s) | 786, 828, 858, 917 |
| BssSI | CACGAG | 1 cut(s) | 491 |
| Bst2BI | CACGAG | 1 cut(s) | 491 |
| Bst2UI | CCWGG | 2 cut(s) | 603, 983 |
| Bst4CI | ACNGT | 2 cut(s) | 550, 598 |
| BstAUI | TGTACA | 1 cut(s) | 545 |
| BstBAI | YACGTR | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 1 cut(s) | 905 |
| BstDEI | CTNAG | 2 cut(s) | 706, 879 |
| BstF5I | GGATG | 6 cut(s) | 184, 264, 287, 514, 888, 941 |
| BstKTI | GATC | 4 cut(s) | 789, 831, 861, 920 |
| BstMBI | GATC | 4 cut(s) | 786, 828, 858, 917 |
| BstMCI | CGRYCG | 2 cut(s) | 861, 920 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 388 |
| BstNI | CCWGG | 2 cut(s) | 603, 983 |
| BstSCI | CCNGG | 2 cut(s) | 601, 981 |
| BstSFI | CTRYAG | 2 cut(s) | 102, 585 |
| BstV1I | GCAGC | 3 cut(s) | 88, 158, 378 |
| BstV2I | GAAGAC | 2 cut(s) | 522, 620 |
| BsuRI | GGCC | 1 cut(s) | 981 |
| BtgZI | GCGATG | 1 cut(s) | 627 |
| BtsCI | GGATG | 6 cut(s) | 184, 264, 287, 514, 888, 941 |
| BtsIMutI | CAGTG | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 1 cut(s) | 905 |
| Cfr13I | GGNCC | 1 cut(s) | 979 |
| CseI | GACGC | 1 cut(s) | 681 |
| Csp6I | GTAC | 3 cut(s) | 285, 422, 546 |
| CviAII | CATG | 3 cut(s) | 203, 437, 577 |
| CviJI | RGCY | 8 cut(s) | 101, 149, 297, 391, 475, 907, 981, 1050 |
| CviKI_1 | RGCY | 8 cut(s) | 101, 149, 297, 391, 475, 907, 981, 1050 |
| CviQI | GTAC | 3 cut(s) | 285, 422, 546 |
| DdeI | CTNAG | 2 cut(s) | 706, 879 |
| DpnI | GATC | 4 cut(s) | 788, 830, 860, 919 |
| DpnII | GATC | 4 cut(s) | 786, 828, 858, 917 |
| Ecl136II | GAGCTC | 1 cut(s) | 475 |
| Eco24I | GRGCYC | 1 cut(s) | 477 |
| Eco53kI | GAGCTC | 1 cut(s) | 475 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| Eco72I | CACGTG | 1 cut(s) | 470 |
| EcoICRI | GAGCTC | 1 cut(s) | 475 |
| EcoRII | CCWGG | 2 cut(s) | 601, 981 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 438 |
| EcoT38I | GRGCYC | 1 cut(s) | 477 |
| FaeI | CATG | 3 cut(s) | 206, 440, 580 |
| FaqI | GGGAC | 1 cut(s) | 738 |
| FatI | CATG | 3 cut(s) | 202, 436, 576 |
| FauNDI | CATATG | 2 cut(s) | 318, 931 |
| Fnu4HI | GCNGC | 3 cut(s) | 102, 147, 392 |
| FokI | GGATG | 6 cut(s) | 191, 271, 294, 521, 875, 948 |
| FriOI | GRGCYC | 1 cut(s) | 477 |
| Fsp4HI | GCNGC | 3 cut(s) | 102, 147, 392 |
| GluI | GCNGC | 3 cut(s) | 102, 147, 392 |
| HaeIII | GGCC | 1 cut(s) | 981 |
| HgaI | GACGC | 1 cut(s) | 681 |
| Hin1II | CATG | 3 cut(s) | 206, 440, 580 |
| HinfI | GANTC | 3 cut(s) | 440, 518, 726 |
| HphI | GGTGA | 3 cut(s) | 44, 586, 875 |
| Hpy188I | TCNGA | 4 cut(s) | 457, 676, 893, 917 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 491, 811 |
| HpyAV | CCTTC | 3 cut(s) | 169, 499, 895 |
| HpyCH4III | ACNGT | 2 cut(s) | 550, 598 |
| HpyCH4IV | ACGT | 3 cut(s) | 22, 469, 739 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 388 |
| HpyF3I | CTNAG | 2 cut(s) | 706, 879 |
| HpySE526I | ACGT | 3 cut(s) | 22, 469, 739 |
| Hsp92II | CATG | 3 cut(s) | 206, 440, 580 |
| Kzo9I | GATC | 4 cut(s) | 786, 828, 858, 917 |
| LmnI | GCTCC | 1 cut(s) | 318 |
| LpnPI | CCDG | 8 cut(s) | 438, 588, 609, 615, 889, 968, 995, 996 |
| Lsp1109I | GCAGC | 3 cut(s) | 88, 158, 378 |
| LweI | GCATC | 3 cut(s) | 36, 499, 926 |
| MaeII | ACGT | 3 cut(s) | 22, 469, 739 |
| MaeIII | GTNAC | 5 cut(s) | 127, 299, 460, 568, 617 |
| MalI | GATC | 4 cut(s) | 788, 830, 860, 919 |
| MboI | GATC | 4 cut(s) | 786, 828, 858, 917 |
| MboII | GAAGA | 7 cut(s) | 8, 201, 527, 620, 751, 761, 904 |
| MhlI | GDGCHC | 2 cut(s) | 477, 562 |
| MluCI | AATT | 9 cut(s) | 274, 328, 347, 497, 522, 711, 874, 940, 1035 |
| MlyI | GAGTC | 2 cut(s) | 512, 720 |
| MnlI | CCTC | 9 cut(s) | 20, 104, 400, 706, 715, 740, 818, 933, 958 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 438 |
| MseI | TTAA | 6 cut(s) | 360, 402, 500, 525, 657, 992 |
| MslI | CAYNNNNRTG | 3 cut(s) | 779, 930, 934 |
| MspR9I | CCNGG | 2 cut(s) | 603, 983 |
| Mva1269I | GAATGC | 1 cut(s) | 590 |
| MvaI | CCWGG | 2 cut(s) | 603, 983 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 388 |
| NdeI | CATATG | 2 cut(s) | 318, 931 |
| NdeII | GATC | 4 cut(s) | 786, 828, 858, 917 |
| NlaIII | CATG | 3 cut(s) | 206, 440, 580 |
| NmuCI | GTSAC | 2 cut(s) | 127, 460 |
| NsiI | ATGCAT | 2 cut(s) | 6, 438 |
| PctI | GAATGC | 1 cut(s) | 590 |
| PfeI | GAWTC | 1 cut(s) | 440 |
| PkrI | GCNGC | 3 cut(s) | 103, 148, 393 |
| Ple19I | CGATCG | 2 cut(s) | 861, 920 |
| PleI | GAGTC | 2 cut(s) | 512, 720 |
| PmaCI | CACGTG | 1 cut(s) | 470 |
| PmlI | CACGTG | 1 cut(s) | 470 |
| PpsI | GAGTC | 2 cut(s) | 512, 720 |
| Ppu21I | YACGTR | 1 cut(s) | 470 |
| PshBI | ATTAAT | 1 cut(s) | 500 |
| PsiI | TTATAA | 1 cut(s) | 237 |
| Psp124BI | GAGCTC | 1 cut(s) | 477 |
| Psp6I | CCWGG | 2 cut(s) | 601, 981 |
| PspCI | CACGTG | 1 cut(s) | 470 |
| PspGI | CCWGG | 2 cut(s) | 601, 981 |
| PspPI | GGNCC | 1 cut(s) | 979 |
| PstI | CTGCAG | 1 cut(s) | 106 |
| PvuI | CGATCG | 2 cut(s) | 861, 920 |
| RsaI | GTAC | 3 cut(s) | 286, 423, 547 |
| RsaNI | GTAC | 3 cut(s) | 285, 422, 546 |
| RseI | CAYNNNNRTG | 3 cut(s) | 779, 930, 934 |
| SacI | GAGCTC | 1 cut(s) | 477 |
| SaqAI | TTAA | 6 cut(s) | 360, 402, 500, 525, 657, 992 |
| SatI | GCNGC | 3 cut(s) | 102, 147, 392 |
| Sau3AI | GATC | 4 cut(s) | 786, 828, 858, 917 |
| Sau96I | GGNCC | 1 cut(s) | 979 |
| SchI | GAGTC | 2 cut(s) | 512, 720 |
| ScrFI | CCNGG | 2 cut(s) | 603, 983 |
| SduI | GDGCHC | 2 cut(s) | 477, 562 |
| SfaNI | GCATC | 3 cut(s) | 36, 499, 926 |
| SfcI | CTRYAG | 2 cut(s) | 102, 585 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 779, 930, 934 |
| Sse9I | AATT | 9 cut(s) | 274, 328, 347, 497, 522, 711, 874, 940, 1035 |
| SsiI | CCGC | 1 cut(s) | 256 |
| SspI | AATATT | 2 cut(s) | 138, 989 |
| SstI | GAGCTC | 1 cut(s) | 477 |
| StyD4I | CCNGG | 2 cut(s) | 601, 981 |
| TaaI | ACNGT | 2 cut(s) | 550, 598 |
| TaiI | ACGT | 3 cut(s) | 25, 472, 742 |
| TaqI | TCGA | 3 cut(s) | 97, 151, 812 |
| TaqII | GACCGA | 1 cut(s) | 779 |
| TasI | AATT | 9 cut(s) | 274, 328, 347, 497, 522, 711, 874, 940, 1035 |
| TatI | WGTACW | 2 cut(s) | 284, 545 |
| TfiI | GAWTC | 1 cut(s) | 440 |
| Tru1I | TTAA | 6 cut(s) | 360, 402, 500, 525, 657, 992 |
| Tru9I | TTAA | 6 cut(s) | 360, 402, 500, 525, 657, 992 |
| TscAI | CASTG | 1 cut(s) | 136 |
| TseFI | GTSAC | 2 cut(s) | 127, 460 |
| TseI | GCWGC | 3 cut(s) | 101, 146, 391 |
| Tsp45I | GTSAC | 2 cut(s) | 127, 460 |
| TspDTI | ATGAA | 9 cut(s) | 148, 188, 191, 453, 518, 655, 877, 918, 954 |
| TspRI | CASTG | 1 cut(s) | 136 |
| VspI | ATTAAT | 1 cut(s) | 500 |
| XapI | RAATTY | 3 cut(s) | 274, 328, 874 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 438 |