Domain of unknown function
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 180 - 228 | 3.2e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 172, 598, 1510 |
| Acc16I | TGCGCA | 1 cut(s) | 1122 |
| AccB1I | GGYRCC | 1 cut(s) | 862 |
| AccBSI | CCGCTC | 1 cut(s) | 775 |
| AccI | GTMKAC | 2 cut(s) | 546, 1562 |
| AciI | CCGC | 9 cut(s) | 28, 56, 362, 775, 800, 814, 994, 1192, 1588 |
| AclWI | GGATC | 6 cut(s) | 74, 257, 353, 707, 888, 1396 |
| AcoI | YGGCCR | 3 cut(s) | 118, 586, 673 |
| AcsI | RAATTY | 1 cut(s) | 104 |
| AcvI | CACGTG | 1 cut(s) | 1017 |
| AcyI | GRCGYC | 1 cut(s) | 185 |
| AfaI | GTAC | 1 cut(s) | 495 |
| AfeI | AGCGCT | 1 cut(s) | 231 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 286, 497, 595, 1468 |
| AflIII | ACRYGT | 1 cut(s) | 1014 |
| AgsI | TTSAA | 4 cut(s) | 523, 761, 1068, 1101 |
| AjiI | CACGTC | 1 cut(s) | 986 |
| AjnI | CCWGG | 5 cut(s) | 305, 583, 593, 1041, 1092 |
| AleI | CACNNNNGTG | 1 cut(s) | 1019 |
| AluBI | AGCT | 5 cut(s) | 471, 628, 695, 1148, 1271 |
| AluI | AGCT | 5 cut(s) | 471, 628, 695, 1148, 1271 |
| Alw26I | GTCTC | 6 cut(s) | 830, 858, 894, 1154, 1277, 1497 |
| AlwI | GGATC | 6 cut(s) | 74, 257, 353, 707, 888, 1396 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1129 |
| Aor51HI | AGCGCT | 1 cut(s) | 231 |
| AoxI | GGCC | 9 cut(s) | 118, 586, 673, 1089, 1241, 1400, 1449, 1458, 1475 |
| ApeKI | GCWGC | 2 cut(s) | 569, 628 |
| ApoI | RAATTY | 1 cut(s) | 104 |
| AspLEI | GCGC | 4 cut(s) | 232, 931, 1012, 1123 |
| AsuC2I | CCSGG | 4 cut(s) | 74, 811, 933, 1404 |
| AsuHPI | GGTGA | 7 cut(s) | 73, 256, 865, 901, 1015, 1483, 1543 |
| AsuII | TTCGAA | 1 cut(s) | 1220 |
| AvaII | GGWCC | 6 cut(s) | 174, 513, 807, 1137, 1484, 1604 |
| AxyI | CCTNAGG | 1 cut(s) | 1446 |
| BalI | TGGCCA | 2 cut(s) | 588, 675 |
| BanI | GGYRCC | 1 cut(s) | 862 |
| BanII | GRGCYC | 1 cut(s) | 406 |
| BauI | CACGAG | 2 cut(s) | 405, 1622 |
| BbrPI | CACGTG | 1 cut(s) | 1017 |
| BbvI | GCAGC | 2 cut(s) | 556, 615 |
| BccI | CCATC | 9 cut(s) | 341, 559, 1149, 1223, 1358, 1386, 1391, 1594, 1626 |
| BceAI | ACGGC | 2 cut(s) | 317, 1023 |
| BciT130I | CCWGG | 5 cut(s) | 307, 585, 595, 1043, 1094 |
| BcnI | CCSGG | 4 cut(s) | 74, 811, 933, 1404 |
| BcoDI | GTCTC | 6 cut(s) | 830, 858, 894, 1154, 1277, 1497 |
| BfaI | CTAG | 4 cut(s) | 35, 99, 213, 1506 |
| BfmI | CTRYAG | 3 cut(s) | 225, 462, 857 |
| BfoI | RGCGCY | 2 cut(s) | 233, 932 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1457 |
| BglII | AGATCT | 2 cut(s) | 87, 1177 |
| BisI | GCNGC | 5 cut(s) | 570, 629, 815, 995, 1588 |
| BlsI | GCNGC | 5 cut(s) | 571, 630, 816, 996, 1589 |
| Bme1390I | CCNGG | 9 cut(s) | 74, 307, 585, 595, 811, 933, 1043, 1094, 1404 |
| Bme18I | GGWCC | 6 cut(s) | 174, 513, 807, 1137, 1484, 1604 |
| BmgBI | CACGTC | 1 cut(s) | 986 |
| BmiI | GGNNCC | 7 cut(s) | 514, 581, 864, 1138, 1139, 1461, 1605 |
| BmrFI | CCNGG | 9 cut(s) | 74, 307, 585, 595, 811, 933, 1043, 1094, 1404 |
| BmsI | GCATC | 1 cut(s) | 1450 |
| BpmI | CTGGAG | 1 cut(s) | 254 |
| Bpu14I | TTCGAA | 1 cut(s) | 1220 |
| BpuMI | CCSGG | 4 cut(s) | 74, 811, 933, 1404 |
| BsaAI | YACGTR | 2 cut(s) | 622, 1017 |
| BsaHI | GRCGYC | 1 cut(s) | 185 |
| BsaI | GGTCTC | 2 cut(s) | 830, 858 |
| BsaJI | CCNNGG | 7 cut(s) | 305, 583, 594, 932, 1042, 1092, 1452 |
| BsaWI | WCCGGW | 4 cut(s) | 865, 881, 1528, 1606 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 286, 497, 595, 1468 |
| Bse118I | RCCGGY | 3 cut(s) | 120, 490, 796 |
| Bse1I | ACTGG | 2 cut(s) | 632, 1486 |
| Bse21I | CCTNAGG | 1 cut(s) | 1446 |
| BseBI | CCWGG | 5 cut(s) | 307, 585, 595, 1043, 1094 |
| BseDI | CCNNGG | 7 cut(s) | 305, 583, 594, 932, 1042, 1092, 1452 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 286, 497, 595, 1468 |
| BseMII | CTCAG | 3 cut(s) | 571, 729, 1121 |
| BseNI | ACTGG | 2 cut(s) | 632, 1486 |
| BseRI | GAGGAG | 3 cut(s) | 20, 62, 65 |
| BseXI | GCAGC | 2 cut(s) | 556, 615 |
| BseYI | CCCAGC | 1 cut(s) | 695 |
| BshFI | GGCC | 9 cut(s) | 120, 588, 675, 1091, 1243, 1402, 1451, 1460, 1477 |
| BshNI | GGYRCC | 1 cut(s) | 862 |
| BslFI | GGGAC | 7 cut(s) | 178, 288, 526, 996, 1123, 1326, 1516 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 286, 497, 595, 1468 |
| BsmAI | GTCTC | 6 cut(s) | 830, 858, 894, 1154, 1277, 1497 |
| BsmBI | CGTCTC | 1 cut(s) | 894 |
| BsmFI | GGGAC | 7 cut(s) | 178, 288, 526, 996, 1123, 1326, 1516 |
| BsnI | GGCC | 9 cut(s) | 120, 588, 675, 1091, 1243, 1402, 1451, 1460, 1477 |
| Bso31I | GGTCTC | 2 cut(s) | 830, 858 |
| Bsp119I | TTCGAA | 1 cut(s) | 1220 |
| Bsp1286I | GDGCHC | 1 cut(s) | 406 |
| Bsp143I | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| BspACI | CCGC | 9 cut(s) | 28, 56, 362, 775, 800, 814, 994, 1192, 1588 |
| BspANI | GGCC | 9 cut(s) | 120, 588, 675, 1091, 1243, 1402, 1451, 1460, 1477 |
| BspCNI | CTCAG | 3 cut(s) | 570, 730, 1122 |
| BspHI | TCATGA | 1 cut(s) | 1628 |
| BspLI | GGNNCC | 7 cut(s) | 514, 581, 864, 1138, 1139, 1461, 1605 |
| BspMAI | CTGCAG | 1 cut(s) | 861 |
| BspPI | GGATC | 6 cut(s) | 74, 257, 353, 707, 888, 1396 |
| BspQI | GCTCTTC | 1 cut(s) | 765 |
| BspT104I | TTCGAA | 1 cut(s) | 1220 |
| BspT107I | GGYRCC | 1 cut(s) | 862 |
| BspTNI | GGTCTC | 2 cut(s) | 830, 858 |
| BsrBI | CCGCTC | 1 cut(s) | 775 |
| BsrFI | RCCGGY | 3 cut(s) | 120, 490, 796 |
| BsrI | ACTGG | 2 cut(s) | 632, 1486 |
| BssAI | RCCGGY | 3 cut(s) | 120, 490, 796 |
| BssECI | CCNNGG | 7 cut(s) | 305, 583, 594, 932, 1042, 1092, 1452 |
| BssMI | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| BssNI | GRCGYC | 1 cut(s) | 185 |
| BssSI | CACGAG | 2 cut(s) | 405, 1622 |
| Bst2BI | CACGAG | 2 cut(s) | 405, 1622 |
| Bst2UI | CCWGG | 5 cut(s) | 307, 585, 595, 1043, 1094 |
| Bst4CI | ACNGT | 4 cut(s) | 146, 650, 671, 1079 |
| Bst6I | CTCTTC | 2 cut(s) | 737, 765 |
| BstACI | GRCGYC | 1 cut(s) | 185 |
| BstBAI | YACGTR | 2 cut(s) | 622, 1017 |
| BstBI | TTCGAA | 1 cut(s) | 1220 |
| BstC8I | GCNNGC | 1 cut(s) | 861 |
| BstDEI | CTNAG | 6 cut(s) | 557, 738, 1036, 1130, 1446, 1488 |
| BstH2I | RGCGCY | 2 cut(s) | 233, 932 |
| BstHHI | GCGC | 4 cut(s) | 232, 931, 1012, 1123 |
| BstKTI | GATC | 9 cut(s) | 82, 90, 252, 361, 613, 702, 896, 1180, 1391 |
| BstMAI | GTCTC | 6 cut(s) | 830, 858, 894, 1154, 1277, 1497 |
| BstMBI | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 329, 338, 1240, 1408, 1457 |
| BstNI | CCWGG | 5 cut(s) | 307, 585, 595, 1043, 1094 |
| BstNSI | RCATGY | 1 cut(s) | 1310 |
| BstSCI | CCNGG | 9 cut(s) | 72, 305, 583, 593, 809, 931, 1041, 1092, 1402 |
| BstSFI | CTRYAG | 3 cut(s) | 225, 462, 857 |
| BstSNI | TACGTA | 1 cut(s) | 622 |
| BstV1I | GCAGC | 2 cut(s) | 556, 615 |
| BstX2I | RGATCY | 4 cut(s) | 87, 893, 1177, 1388 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 90 |
| BstYI | RGATCY | 4 cut(s) | 87, 893, 1177, 1388 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1446 |
| BsuRI | GGCC | 9 cut(s) | 120, 588, 675, 1091, 1243, 1402, 1451, 1460, 1477 |
| BtrI | CACGTC | 1 cut(s) | 986 |
| BtsIMutI | CAGTG | 3 cut(s) | 676, 1127, 1479 |
| Cac8I | GCNNGC | 1 cut(s) | 861 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1129 |
| CciI | TCATGA | 1 cut(s) | 1628 |
| CfoI | GCGC | 4 cut(s) | 232, 931, 1012, 1123 |
| Cfr10I | RCCGGY | 3 cut(s) | 120, 490, 796 |
| CseI | GACGC | 1 cut(s) | 193 |
| Csp6I | GTAC | 1 cut(s) | 494 |
| CviAII | CATG | 7 cut(s) | 269, 296, 427, 497, 665, 1307, 1629 |
| CviQI | GTAC | 1 cut(s) | 494 |
| DdeI | CTNAG | 6 cut(s) | 557, 738, 1036, 1130, 1446, 1488 |
| DpnI | GATC | 9 cut(s) | 81, 89, 251, 360, 612, 701, 895, 1179, 1390 |
| DpnII | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 172, 598, 1510 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 172, 598, 1510 |
| EaeI | YGGCCR | 3 cut(s) | 118, 586, 673 |
| Eam1104I | CTCTTC | 2 cut(s) | 737, 765 |
| EarI | CTCTTC | 2 cut(s) | 737, 765 |
| EciI | GGCGGA | 3 cut(s) | 71, 815, 1207 |
| Eco105I | TACGTA | 1 cut(s) | 622 |
| Eco147I | AGGCCT | 1 cut(s) | 1451 |
| Eco24I | GRGCYC | 1 cut(s) | 406 |
| Eco31I | GGTCTC | 2 cut(s) | 830, 858 |
| Eco47I | GGWCC | 6 cut(s) | 174, 513, 807, 1137, 1484, 1604 |
| Eco47III | AGCGCT | 1 cut(s) | 231 |
| Eco72I | CACGTG | 1 cut(s) | 1017 |
| Eco81I | CCTNAGG | 1 cut(s) | 1446 |
| EcoO109I | RGGNCCY | 4 cut(s) | 174, 513, 1137, 1459 |
| EcoRII | CCWGG | 5 cut(s) | 305, 583, 593, 1041, 1092 |
| EcoT38I | GRGCYC | 1 cut(s) | 406 |
| Esp3I | CGTCTC | 1 cut(s) | 894 |
| FaeI | CATG | 7 cut(s) | 272, 299, 430, 500, 668, 1310, 1632 |
| FaqI | GGGAC | 7 cut(s) | 178, 288, 526, 996, 1123, 1326, 1516 |
| FatI | CATG | 7 cut(s) | 268, 295, 426, 496, 664, 1306, 1628 |
| FblI | GTMKAC | 2 cut(s) | 546, 1562 |
| Fnu4HI | GCNGC | 5 cut(s) | 570, 629, 815, 995, 1588 |
| FriOI | GRGCYC | 1 cut(s) | 406 |
| Fsp4HI | GCNGC | 5 cut(s) | 570, 629, 815, 995, 1588 |
| FspBI | CTAG | 4 cut(s) | 35, 99, 213, 1506 |
| FspI | TGCGCA | 1 cut(s) | 1122 |
| GlaI | GCGC | 4 cut(s) | 231, 930, 1011, 1122 |
| GluI | GCNGC | 5 cut(s) | 570, 629, 815, 995, 1588 |
| GsaI | CCCAGC | 1 cut(s) | 699 |
| GsuI | CTGGAG | 1 cut(s) | 254 |
| HaeII | RGCGCY | 2 cut(s) | 233, 932 |
| HaeIII | GGCC | 9 cut(s) | 120, 588, 675, 1091, 1243, 1402, 1451, 1460, 1477 |
| HgaI | GACGC | 1 cut(s) | 193 |
| HhaI | GCGC | 4 cut(s) | 232, 931, 1012, 1123 |
| Hin1I | GRCGYC | 1 cut(s) | 185 |
| Hin1II | CATG | 7 cut(s) | 272, 299, 430, 500, 668, 1310, 1632 |
| Hin6I | GCGC | 4 cut(s) | 230, 929, 1010, 1121 |
| HinP1I | GCGC | 4 cut(s) | 230, 929, 1010, 1121 |
| HincII | GTYRAC | 3 cut(s) | 42, 547, 1431 |
| HindII | GTYRAC | 3 cut(s) | 42, 547, 1431 |
| HinfI | GANTC | 6 cut(s) | 208, 370, 526, 968, 1337, 1625 |
| HphI | GGTGA | 7 cut(s) | 73, 256, 865, 901, 1015, 1483, 1543 |
| Hpy166II | GTNNAC | 5 cut(s) | 42, 547, 807, 1431, 1563 |
| Hpy188I | TCNGA | 6 cut(s) | 560, 739, 940, 1084, 1345, 1456 |
| Hpy188III | TCNNGA | 8 cut(s) | 91, 614, 829, 897, 1211, 1334, 1622, 1629 |
| Hpy8I | GTNNAC | 5 cut(s) | 42, 547, 807, 1431, 1563 |
| Hpy99I | CGWCG | 1 cut(s) | 1516 |
| HpyAV | CCTTC | 8 cut(s) | 427, 555, 775, 905, 994, 1513, 1542, 1602 |
| HpyCH4III | ACNGT | 4 cut(s) | 146, 650, 671, 1079 |
| HpyCH4IV | ACGT | 3 cut(s) | 621, 985, 1016 |
| HpyCH4V | TGCA | 4 cut(s) | 859, 1024, 1187, 1306 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 329, 338, 1240, 1408, 1457 |
| HpyF3I | CTNAG | 6 cut(s) | 557, 738, 1036, 1130, 1446, 1488 |
| HpySE526I | ACGT | 3 cut(s) | 621, 985, 1016 |
| Hsp92I | GRCGYC | 1 cut(s) | 185 |
| Hsp92II | CATG | 7 cut(s) | 272, 299, 430, 500, 668, 1310, 1632 |
| HspAI | GCGC | 4 cut(s) | 230, 929, 1010, 1121 |
| KflI | GGGWCCC | 1 cut(s) | 1137 |
| Kzo9I | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| LguI | GCTCTTC | 1 cut(s) | 765 |
| LmnI | GCTCC | 4 cut(s) | 468, 585, 926, 1438 |
| Lsp1109I | GCAGC | 2 cut(s) | 556, 615 |
| LweI | GCATC | 1 cut(s) | 1450 |
| MaeI | CTAG | 4 cut(s) | 35, 99, 213, 1506 |
| MaeII | ACGT | 3 cut(s) | 621, 985, 1016 |
| MaeIII | GTNAC | 2 cut(s) | 217, 1003 |
| MalI | GATC | 9 cut(s) | 81, 89, 251, 360, 612, 701, 895, 1179, 1390 |
| MbiI | CCGCTC | 1 cut(s) | 775 |
| MboI | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| MboII | GAAGA | 9 cut(s) | 202, 205, 284, 535, 754, 782, 1332, 1528, 1557 |
| MflI | RGATCY | 4 cut(s) | 87, 893, 1177, 1388 |
| MhlI | GDGCHC | 1 cut(s) | 406 |
| MlsI | TGGCCA | 2 cut(s) | 588, 675 |
| MluCI | AATT | 5 cut(s) | 104, 386, 450, 1051, 1068 |
| MluNI | TGGCCA | 2 cut(s) | 588, 675 |
| MmeI | TCCRAC | 1 cut(s) | 333 |
| Mox20I | TGGCCA | 2 cut(s) | 588, 675 |
| MscI | TGGCCA | 2 cut(s) | 588, 675 |
| MseI | TTAA | 2 cut(s) | 1154, 1277 |
| MslI | CAYNNNNRTG | 3 cut(s) | 273, 669, 1019 |
| Msp20I | TGGCCA | 2 cut(s) | 588, 675 |
| MspA1I | CMGCKG | 2 cut(s) | 1148, 1271 |
| MspR9I | CCNGG | 9 cut(s) | 74, 307, 585, 595, 811, 933, 1043, 1094, 1404 |
| MvaI | CCWGG | 5 cut(s) | 307, 585, 595, 1043, 1094 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 329, 338, 1240, 1408, 1457 |
| NciI | CCSGG | 4 cut(s) | 74, 811, 933, 1404 |
| NdeII | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| NlaIII | CATG | 7 cut(s) | 272, 299, 430, 500, 668, 1310, 1632 |
| NlaIV | GGNNCC | 7 cut(s) | 514, 581, 864, 1138, 1139, 1461, 1605 |
| NmuCI | GTSAC | 1 cut(s) | 1003 |
| NsbI | TGCGCA | 1 cut(s) | 1122 |
| NspI | RCATGY | 1 cut(s) | 1310 |
| NspV | TTCGAA | 1 cut(s) | 1220 |
| OliI | CACNNNNGTG | 1 cut(s) | 1019 |
| PagI | TCATGA | 1 cut(s) | 1628 |
| PceI | AGGCCT | 1 cut(s) | 1451 |
| PciSI | GCTCTTC | 1 cut(s) | 765 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1013 |
| PfeI | GAWTC | 5 cut(s) | 208, 370, 526, 968, 1337 |
| PflFI | GACNNNGTC | 1 cut(s) | 1507 |
| PfoI | TCCNGGA | 1 cut(s) | 72 |
| PkrI | GCNGC | 5 cut(s) | 571, 630, 816, 996, 1589 |
| PmaCI | CACGTG | 1 cut(s) | 1017 |
| PmlI | CACGTG | 1 cut(s) | 1017 |
| Ppu21I | YACGTR | 2 cut(s) | 622, 1017 |
| PpuMI | RGGWCCY | 3 cut(s) | 174, 513, 1137 |
| Psp5II | RGGWCCY | 3 cut(s) | 174, 513, 1137 |
| Psp6I | CCWGG | 5 cut(s) | 305, 583, 593, 1041, 1092 |
| PspCI | CACGTG | 1 cut(s) | 1017 |
| PspFI | CCCAGC | 1 cut(s) | 695 |
| PspGI | CCWGG | 5 cut(s) | 305, 583, 593, 1041, 1092 |
| PspN4I | GGNNCC | 7 cut(s) | 514, 581, 864, 1138, 1139, 1461, 1605 |
| PspPPI | RGGWCCY | 3 cut(s) | 174, 513, 1137 |
| PstI | CTGCAG | 1 cut(s) | 861 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1129 |
| PsuI | RGATCY | 4 cut(s) | 87, 893, 1177, 1388 |
| PsyI | GACNNNGTC | 1 cut(s) | 1507 |
| PvuII | CAGCTG | 2 cut(s) | 1148, 1271 |
| RsaI | GTAC | 1 cut(s) | 495 |
| RsaNI | GTAC | 1 cut(s) | 494 |
| RseI | CAYNNNNRTG | 3 cut(s) | 273, 669, 1019 |
| SalI | GTCGAC | 1 cut(s) | 545 |
| SapI | GCTCTTC | 1 cut(s) | 765 |
| SaqAI | TTAA | 2 cut(s) | 1154, 1277 |
| SatI | GCNGC | 5 cut(s) | 570, 629, 815, 995, 1588 |
| Sau3AI | GATC | 9 cut(s) | 79, 87, 249, 358, 610, 699, 893, 1177, 1388 |
| ScrFI | CCNGG | 9 cut(s) | 74, 307, 585, 595, 811, 933, 1043, 1094, 1404 |
| SduI | GDGCHC | 1 cut(s) | 406 |
| SfaNI | GCATC | 1 cut(s) | 1450 |
| SfcI | CTRYAG | 3 cut(s) | 225, 462, 857 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1457 |
| SfuI | TTCGAA | 1 cut(s) | 1220 |
| SinI | GGWCC | 6 cut(s) | 174, 513, 807, 1137, 1484, 1604 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 273, 669, 1019 |
| SnaBI | TACGTA | 1 cut(s) | 622 |
| Sse9I | AATT | 5 cut(s) | 104, 386, 450, 1051, 1068 |
| SseBI | AGGCCT | 1 cut(s) | 1451 |
| SsiI | CCGC | 9 cut(s) | 28, 56, 362, 775, 800, 814, 994, 1192, 1588 |
| SspMI | CTAG | 4 cut(s) | 35, 99, 213, 1506 |
| StuI | AGGCCT | 1 cut(s) | 1451 |
| StyD4I | CCNGG | 9 cut(s) | 72, 305, 583, 593, 809, 931, 1041, 1092, 1402 |
| TaaI | ACNGT | 4 cut(s) | 146, 650, 671, 1079 |
| TaiI | ACGT | 3 cut(s) | 624, 988, 1019 |
| TaqI | TCGA | 5 cut(s) | 315, 546, 1220, 1514, 1613 |
| TaqII | GACCGA | 1 cut(s) | 294 |
| TasI | AATT | 5 cut(s) | 104, 386, 450, 1051, 1068 |
| TauI | GCSGC | 3 cut(s) | 817, 997, 1590 |
| TfiI | GAWTC | 5 cut(s) | 208, 370, 526, 968, 1337 |
| Tru1I | TTAA | 2 cut(s) | 1154, 1277 |
| Tru9I | TTAA | 2 cut(s) | 1154, 1277 |
| TscAI | CASTG | 3 cut(s) | 676, 1134, 1486 |
| TseFI | GTSAC | 1 cut(s) | 1003 |
| TseI | GCWGC | 2 cut(s) | 569, 628 |
| Tsp45I | GTSAC | 1 cut(s) | 1003 |
| TspDTI | ATGAA | 2 cut(s) | 284, 415 |
| TspGWI | ACGGA | 2 cut(s) | 1330, 1585 |
| TspRI | CASTG | 3 cut(s) | 676, 1134, 1486 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1507 |
| VpaK11BI | GGWCC | 6 cut(s) | 174, 513, 807, 1137, 1484, 1604 |
| XapI | RAATTY | 1 cut(s) | 104 |
| XceI | RCATGY | 1 cut(s) | 1310 |
| XmiI | GTMKAC | 2 cut(s) | 546, 1562 |
| XspI | CTAG | 4 cut(s) | 35, 99, 213, 1506 |