Vacuolar protein sorting-associated protein 53
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 33 - 88 | 5.2e-16 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 410, 892 |
| Acc36I | ACCTGC | 3 cut(s) | 56, 410, 892 |
| AccB1I | GGYRCC | 1 cut(s) | 734 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 359, 650 |
| AccBSI | CCGCTC | 1 cut(s) | 62 |
| AciI | CCGC | 9 cut(s) | 62, 398, 474, 501, 558, 660, 683, 689, 738 |
| AclWI | GGATC | 4 cut(s) | 204, 330, 409, 451 |
| AfaI | GTAC | 3 cut(s) | 89, 566, 617 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 359, 561, 650 |
| AgsI | TTSAA | 2 cut(s) | 509, 710 |
| AjnI | CCWGG | 1 cut(s) | 898 |
| AleI | CACNNNNGTG | 1 cut(s) | 95 |
| AluBI | AGCT | 8 cut(s) | 263, 416, 461, 485, 524, 680, 827, 947 |
| AluI | AGCT | 8 cut(s) | 263, 416, 461, 485, 524, 680, 827, 947 |
| Alw26I | GTCTC | 3 cut(s) | 116, 128, 873 |
| AlwI | GGATC | 4 cut(s) | 204, 330, 409, 451 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 464, 527, 830 |
| AoxI | GGCC | 3 cut(s) | 198, 300, 912 |
| AseI | ATTAAT | 1 cut(s) | 932 |
| AspLEI | GCGC | 1 cut(s) | 763 |
| AspS9I | GGNCC | 2 cut(s) | 300, 913 |
| AsuC2I | CCSGG | 1 cut(s) | 8 |
| AsuHPI | GGTGA | 3 cut(s) | 176, 873, 888 |
| BanI | GGYRCC | 1 cut(s) | 734 |
| BanII | GRGCYC | 1 cut(s) | 8 |
| BccI | CCATC | 2 cut(s) | 284, 807 |
| BceAI | ACGGC | 1 cut(s) | 42 |
| BciT130I | CCWGG | 1 cut(s) | 900 |
| BciVI | GTATCC | 1 cut(s) | 651 |
| BcnI | CCSGG | 1 cut(s) | 8 |
| BcoDI | GTCTC | 3 cut(s) | 116, 128, 873 |
| BfaI | CTAG | 2 cut(s) | 836, 955 |
| BfmI | CTRYAG | 2 cut(s) | 417, 465 |
| BfuAI | ACCTGC | 3 cut(s) | 56, 410, 892 |
| BfuI | GTATCC | 1 cut(s) | 651 |
| Bme1390I | CCNGG | 2 cut(s) | 8, 900 |
| BmgT120I | GGNCC | 2 cut(s) | 300, 913 |
| BmiI | GGNNCC | 1 cut(s) | 736 |
| BmrFI | CCNGG | 2 cut(s) | 8, 900 |
| BmrI | ACTGGG | 1 cut(s) | 275 |
| BmsI | GCATC | 3 cut(s) | 262, 654, 792 |
| BmuI | ACTGGG | 1 cut(s) | 275 |
| BpuMI | CCSGG | 1 cut(s) | 8 |
| BsaI | GGTCTC | 2 cut(s) | 116, 128 |
| BsaJI | CCNNGG | 2 cut(s) | 93, 213 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 417, 423, 447, 453 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 359, 561, 650 |
| Bse1I | ACTGG | 5 cut(s) | 117, 208, 281, 637, 644 |
| BseBI | CCWGG | 1 cut(s) | 900 |
| BseDI | CCNNGG | 2 cut(s) | 93, 213 |
| BseGI | GGATG | 2 cut(s) | 669, 783 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 359, 561, 650 |
| BseNI | ACTGG | 5 cut(s) | 117, 208, 281, 637, 644 |
| BseRI | GAGGAG | 6 cut(s) | 69, 72, 381, 384, 387, 690 |
| BseYI | CCCAGC | 1 cut(s) | 481 |
| BsgI | GTGCAG | 1 cut(s) | 909 |
| BshFI | GGCC | 3 cut(s) | 200, 302, 914 |
| BshNI | GGYRCC | 1 cut(s) | 734 |
| BsiSI | CCGG | 1 cut(s) | 8 |
| BslFI | GGGAC | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 359, 561, 650 |
| BsmAI | GTCTC | 3 cut(s) | 116, 128, 873 |
| BsmFI | GGGAC | 1 cut(s) | 92 |
| BsmI | GAATGC | 1 cut(s) | 476 |
| BsnI | GGCC | 3 cut(s) | 200, 302, 914 |
| Bso31I | GGTCTC | 2 cut(s) | 116, 128 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp143I | GATC | 4 cut(s) | 209, 335, 401, 443 |
| BspACI | CCGC | 9 cut(s) | 62, 398, 474, 501, 558, 660, 683, 689, 738 |
| BspANI | GGCC | 3 cut(s) | 200, 302, 914 |
| BspLI | GGNNCC | 1 cut(s) | 736 |
| BspMAI | CTGCAG | 2 cut(s) | 421, 469 |
| BspMI | ACCTGC | 3 cut(s) | 56, 410, 892 |
| BspPI | GGATC | 4 cut(s) | 204, 330, 409, 451 |
| BspT107I | GGYRCC | 1 cut(s) | 734 |
| BspTNI | GGTCTC | 2 cut(s) | 116, 128 |
| BsrBI | CCGCTC | 1 cut(s) | 62 |
| BsrI | ACTGG | 5 cut(s) | 117, 208, 281, 637, 644 |
| BssECI | CCNNGG | 2 cut(s) | 93, 213 |
| BssMI | GATC | 4 cut(s) | 209, 335, 401, 443 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 213 |
| Bst2UI | CCWGG | 1 cut(s) | 900 |
| Bst4CI | ACNGT | 1 cut(s) | 611 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 464 |
| BstF5I | GGATG | 2 cut(s) | 669, 783 |
| BstHHI | GCGC | 1 cut(s) | 763 |
| BstKTI | GATC | 4 cut(s) | 212, 338, 404, 446 |
| BstMAI | GTCTC | 3 cut(s) | 116, 128, 873 |
| BstMBI | GATC | 4 cut(s) | 209, 335, 401, 443 |
| BstNI | CCWGG | 1 cut(s) | 900 |
| BstSCI | CCNGG | 2 cut(s) | 6, 898 |
| BstSFI | CTRYAG | 2 cut(s) | 417, 465 |
| BstX2I | RGATCY | 2 cut(s) | 209, 335 |
| BstYI | RGATCY | 2 cut(s) | 209, 335 |
| BsuI | GTATCC | 1 cut(s) | 651 |
| BsuRI | GGCC | 3 cut(s) | 200, 302, 914 |
| BtgZI | GCGATG | 2 cut(s) | 269, 935 |
| BtsCI | GGATG | 2 cut(s) | 669, 783 |
| BtsIMutI | CAGTG | 4 cut(s) | 189, 201, 288, 651 |
| BveI | ACCTGC | 3 cut(s) | 56, 410, 892 |
| CaiI | CAGNNNCTG | 3 cut(s) | 464, 527, 830 |
| CfoI | GCGC | 1 cut(s) | 763 |
| Cfr13I | GGNCC | 2 cut(s) | 300, 913 |
| Csp6I | GTAC | 3 cut(s) | 88, 565, 616 |
| CviAII | CATG | 4 cut(s) | 139, 359, 865, 910 |
| CviQI | GTAC | 3 cut(s) | 88, 565, 616 |
| DpnI | GATC | 4 cut(s) | 211, 337, 403, 445 |
| DpnII | GATC | 4 cut(s) | 209, 335, 401, 443 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 213 |
| Eco24I | GRGCYC | 1 cut(s) | 8 |
| Eco31I | GGTCTC | 2 cut(s) | 116, 128 |
| EcoRII | CCWGG | 1 cut(s) | 898 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 213 |
| EcoT38I | GRGCYC | 1 cut(s) | 8 |
| ErhI | CCWWGG | 2 cut(s) | 93, 213 |
| FaeI | CATG | 4 cut(s) | 142, 362, 868, 913 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 134, 166 |
| FaqI | GGGAC | 1 cut(s) | 92 |
| FatI | CATG | 4 cut(s) | 138, 358, 864, 909 |
| FauI | CCCGC | 2 cut(s) | 391, 653 |
| FokI | GGATG | 2 cut(s) | 676, 770 |
| FriOI | GRGCYC | 1 cut(s) | 8 |
| FspBI | CTAG | 2 cut(s) | 836, 955 |
| GlaI | GCGC | 1 cut(s) | 762 |
| GsaI | CCCAGC | 1 cut(s) | 485 |
| HaeIII | GGCC | 3 cut(s) | 200, 302, 914 |
| HapII | CCGG | 1 cut(s) | 8 |
| HhaI | GCGC | 1 cut(s) | 763 |
| Hin1II | CATG | 4 cut(s) | 142, 362, 868, 913 |
| Hin6I | GCGC | 1 cut(s) | 761 |
| HinP1I | GCGC | 1 cut(s) | 761 |
| HinfI | GANTC | 2 cut(s) | 242, 517 |
| HpaII | CCGG | 1 cut(s) | 8 |
| HphI | GGTGA | 3 cut(s) | 176, 873, 888 |
| Hpy166II | GTNNAC | 2 cut(s) | 90, 907 |
| Hpy188I | TCNGA | 2 cut(s) | 247, 333 |
| Hpy188III | TCNNGA | 1 cut(s) | 239 |
| Hpy8I | GTNNAC | 2 cut(s) | 90, 907 |
| Hpy99I | CGWCG | 1 cut(s) | 88 |
| HpyAV | CCTTC | 5 cut(s) | 124, 288, 354, 870, 926 |
| HpyCH4III | ACNGT | 1 cut(s) | 611 |
| HpyCH4IV | ACGT | 1 cut(s) | 86 |
| HpyCH4V | TGCA | 7 cut(s) | 309, 419, 455, 467, 875, 892, 926 |
| HpySE526I | ACGT | 1 cut(s) | 86 |
| Hsp92II | CATG | 4 cut(s) | 142, 362, 868, 913 |
| HspAI | GCGC | 1 cut(s) | 761 |
| Kzo9I | GATC | 4 cut(s) | 209, 335, 401, 443 |
| LmnI | GCTCC | 4 cut(s) | 59, 626, 677, 862 |
| LweI | GCATC | 3 cut(s) | 262, 654, 792 |
| MaeI | CTAG | 2 cut(s) | 836, 955 |
| MaeII | ACGT | 1 cut(s) | 86 |
| MaeIII | GTNAC | 2 cut(s) | 164, 229 |
| MalI | GATC | 4 cut(s) | 211, 337, 403, 445 |
| MbiI | CCGCTC | 1 cut(s) | 62 |
| MboI | GATC | 4 cut(s) | 209, 335, 401, 443 |
| MboII | GAAGA | 2 cut(s) | 154, 698 |
| MflI | RGATCY | 2 cut(s) | 209, 335 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MluCI | AATT | 3 cut(s) | 46, 933, 939 |
| MmeI | TCCRAC | 3 cut(s) | 85, 409, 415 |
| MseI | TTAA | 1 cut(s) | 932 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 495 |
| MspA1I | CMGCKG | 4 cut(s) | 524, 689, 740, 827 |
| MspI | CCGG | 1 cut(s) | 8 |
| MspR9I | CCNGG | 2 cut(s) | 8, 900 |
| Mva1269I | GAATGC | 1 cut(s) | 476 |
| MvaI | CCWGG | 1 cut(s) | 900 |
| NciI | CCSGG | 1 cut(s) | 8 |
| NdeII | GATC | 4 cut(s) | 209, 335, 401, 443 |
| NlaIII | CATG | 4 cut(s) | 142, 362, 868, 913 |
| NlaIV | GGNNCC | 1 cut(s) | 736 |
| NmuCI | GTSAC | 1 cut(s) | 164 |
| OliI | CACNNNNGTG | 1 cut(s) | 95 |
| PaqCI | CACCTGC | 2 cut(s) | 410, 892 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 251 |
| PctI | GAATGC | 1 cut(s) | 476 |
| PfeI | GAWTC | 2 cut(s) | 242, 517 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 359, 650 |
| PshBI | ATTAAT | 1 cut(s) | 932 |
| Psp6I | CCWGG | 1 cut(s) | 898 |
| PspFI | CCCAGC | 1 cut(s) | 481 |
| PspGI | CCWGG | 1 cut(s) | 898 |
| PspN4I | GGNNCC | 1 cut(s) | 736 |
| PspPI | GGNCC | 2 cut(s) | 300, 913 |
| PstI | CTGCAG | 2 cut(s) | 421, 469 |
| PstNI | CAGNNNCTG | 3 cut(s) | 464, 527, 830 |
| PsuI | RGATCY | 2 cut(s) | 209, 335 |
| PvuII | CAGCTG | 2 cut(s) | 524, 827 |
| RsaI | GTAC | 3 cut(s) | 89, 566, 617 |
| RsaNI | GTAC | 3 cut(s) | 88, 565, 616 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 495 |
| SaqAI | TTAA | 1 cut(s) | 932 |
| Sau3AI | GATC | 4 cut(s) | 209, 335, 401, 443 |
| Sau96I | GGNCC | 2 cut(s) | 300, 913 |
| ScrFI | CCNGG | 2 cut(s) | 8, 900 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SfaNI | GCATC | 3 cut(s) | 262, 654, 792 |
| SfcI | CTRYAG | 2 cut(s) | 417, 465 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 495 |
| Sse9I | AATT | 3 cut(s) | 46, 933, 939 |
| SsiI | CCGC | 9 cut(s) | 62, 398, 474, 501, 558, 660, 683, 689, 738 |
| SspI | AATATT | 1 cut(s) | 408 |
| SspMI | CTAG | 2 cut(s) | 836, 955 |
| StyD4I | CCNGG | 2 cut(s) | 6, 898 |
| StyI | CCWWGG | 2 cut(s) | 93, 213 |
| TaaI | ACNGT | 1 cut(s) | 611 |
| TaiI | ACGT | 1 cut(s) | 89 |
| TaqI | TCGA | 1 cut(s) | 270 |
| TasI | AATT | 3 cut(s) | 46, 933, 939 |
| TauI | GCSGC | 5 cut(s) | 65, 503, 686, 692, 740 |
| TfiI | GAWTC | 2 cut(s) | 242, 517 |
| Tru1I | TTAA | 1 cut(s) | 932 |
| Tru9I | TTAA | 1 cut(s) | 932 |
| TscAI | CASTG | 4 cut(s) | 196, 208, 288, 651 |
| TseFI | GTSAC | 1 cut(s) | 164 |
| Tsp45I | GTSAC | 1 cut(s) | 164 |
| TspDTI | ATGAA | 1 cut(s) | 155 |
| TspGWI | ACGGA | 3 cut(s) | 237, 633, 729 |
| TspRI | CASTG | 4 cut(s) | 196, 208, 288, 651 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 359, 650 |
| VspI | ATTAAT | 1 cut(s) | 932 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XspI | CTAG | 2 cut(s) | 836, 955 |