protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 342 |
| AccBSI | CCGCTC | 1 cut(s) | 445 |
| AciI | CCGC | 2 cut(s) | 325, 443 |
| AclWI | GGATC | 1 cut(s) | 94 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AfaI | GTAC | 1 cut(s) | 391 |
| AgsI | TTSAA | 5 cut(s) | 119, 258, 320, 457, 467 |
| AluBI | AGCT | 3 cut(s) | 206, 402, 496 |
| AluI | AGCT | 3 cut(s) | 206, 402, 496 |
| Alw21I | GWGCWC | 1 cut(s) | 404 |
| Alw26I | GTCTC | 1 cut(s) | 444 |
| AlwI | GGATC | 1 cut(s) | 94 |
| ApeKI | GCWGC | 1 cut(s) | 496 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 123, 271 |
| BanII | GRGCYC | 1 cut(s) | 404 |
| Bbv12I | GWGCWC | 1 cut(s) | 404 |
| BbvI | GCAGC | 1 cut(s) | 483 |
| BcoDI | GTCTC | 1 cut(s) | 444 |
| BfmI | CTRYAG | 1 cut(s) | 207 |
| BisI | GCNGC | 2 cut(s) | 325, 497 |
| BlsI | GCNGC | 2 cut(s) | 326, 498 |
| BmsI | GCATC | 1 cut(s) | 141 |
| Bse3DI | GCAATG | 2 cut(s) | 179, 506 |
| BseGI | GGATG | 2 cut(s) | 289, 392 |
| BseMI | GCAATG | 2 cut(s) | 179, 506 |
| BseXI | GCAGC | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 1 cut(s) | 404 |
| BsmAI | GTCTC | 1 cut(s) | 444 |
| BsmI | GAATGC | 1 cut(s) | 326 |
| Bsp1286I | GDGCHC | 1 cut(s) | 404 |
| Bsp143I | GATC | 1 cut(s) | 99 |
| BspACI | CCGC | 2 cut(s) | 325, 443 |
| BspHI | TCATGA | 1 cut(s) | 183 |
| BspPI | GGATC | 1 cut(s) | 94 |
| BsrBI | CCGCTC | 1 cut(s) | 445 |
| BsrDI | GCAATG | 2 cut(s) | 179, 506 |
| BssMI | GATC | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 1 cut(s) | 394 |
| BstF5I | GGATG | 2 cut(s) | 289, 392 |
| BstKTI | GATC | 1 cut(s) | 102 |
| BstMAI | GTCTC | 1 cut(s) | 444 |
| BstMBI | GATC | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 493 |
| BstSFI | CTRYAG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 1 cut(s) | 483 |
| BtsCI | GGATG | 2 cut(s) | 289, 392 |
| BtsI | GCAGTG | 1 cut(s) | 514 |
| BtsIMutI | CAGTG | 2 cut(s) | 234, 514 |
| CciI | TCATGA | 1 cut(s) | 183 |
| Csp6I | GTAC | 1 cut(s) | 390 |
| CviAII | CATG | 2 cut(s) | 184, 308 |
| CviJI | RGCY | 3 cut(s) | 206, 402, 496 |
| CviKI_1 | RGCY | 3 cut(s) | 206, 402, 496 |
| CviQI | GTAC | 1 cut(s) | 390 |
| DpnI | GATC | 1 cut(s) | 101 |
| DpnII | GATC | 1 cut(s) | 99 |
| Ecl136II | GAGCTC | 1 cut(s) | 402 |
| Eco24I | GRGCYC | 1 cut(s) | 404 |
| Eco53kI | GAGCTC | 1 cut(s) | 402 |
| EcoICRI | GAGCTC | 1 cut(s) | 402 |
| EcoRI | GAATTC | 1 cut(s) | 119 |
| EcoT38I | GRGCYC | 1 cut(s) | 404 |
| FaeI | CATG | 2 cut(s) | 187, 311 |
| FatI | CATG | 2 cut(s) | 183, 307 |
| FauNDI | CATATG | 2 cut(s) | 105, 423 |
| Fnu4HI | GCNGC | 2 cut(s) | 325, 497 |
| FokI | GGATG | 2 cut(s) | 296, 399 |
| FriOI | GRGCYC | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 2 cut(s) | 325, 497 |
| GluI | GCNGC | 2 cut(s) | 325, 497 |
| Hin1II | CATG | 2 cut(s) | 187, 311 |
| HinfI | GANTC | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 1 cut(s) | 184 |
| HpyAV | CCTTC | 1 cut(s) | 288 |
| HpyCH4III | ACNGT | 1 cut(s) | 394 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 109, 132, 172, 473, 481, 487, 499, 519 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 493 |
| Hsp92II | CATG | 2 cut(s) | 187, 311 |
| Kzo9I | GATC | 1 cut(s) | 99 |
| LmnI | GCTCC | 1 cut(s) | 423 |
| LpnPI | CCDG | 2 cut(s) | 54, 414 |
| Lsp1109I | GCAGC | 1 cut(s) | 483 |
| LweI | GCATC | 1 cut(s) | 141 |
| MaeIII | GTNAC | 2 cut(s) | 232, 394 |
| MalI | GATC | 1 cut(s) | 101 |
| MbiI | CCGCTC | 1 cut(s) | 445 |
| MboI | GATC | 1 cut(s) | 99 |
| MboII | GAAGA | 1 cut(s) | 377 |
| MhlI | GDGCHC | 1 cut(s) | 404 |
| MluCI | AATT | 7 cut(s) | 27, 49, 95, 119, 330, 379, 434 |
| MnlI | CCTC | 2 cut(s) | 148, 209 |
| MroXI | GAANNNNTTC | 2 cut(s) | 123, 271 |
| MseI | TTAA | 4 cut(s) | 26, 48, 333, 507 |
| Mva1269I | GAATGC | 1 cut(s) | 326 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 493 |
| NdeI | CATATG | 2 cut(s) | 105, 423 |
| NdeII | GATC | 1 cut(s) | 99 |
| NlaIII | CATG | 2 cut(s) | 187, 311 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| PagI | TCATGA | 1 cut(s) | 183 |
| PctI | GAATGC | 1 cut(s) | 326 |
| PdmI | GAANNNNTTC | 2 cut(s) | 123, 271 |
| PfeI | GAWTC | 1 cut(s) | 72 |
| PkrI | GCNGC | 2 cut(s) | 326, 498 |
| PsiI | TTATAA | 1 cut(s) | 342 |
| Psp124BI | GAGCTC | 1 cut(s) | 404 |
| RsaI | GTAC | 1 cut(s) | 391 |
| RsaNI | GTAC | 1 cut(s) | 390 |
| SacI | GAGCTC | 1 cut(s) | 404 |
| SaqAI | TTAA | 4 cut(s) | 26, 48, 333, 507 |
| SatI | GCNGC | 2 cut(s) | 325, 497 |
| Sau3AI | GATC | 1 cut(s) | 99 |
| SduI | GDGCHC | 1 cut(s) | 404 |
| SetI | ASST | 5 cut(s) | 208, 348, 404, 472, 498 |
| SfaNI | GCATC | 1 cut(s) | 141 |
| SfcI | CTRYAG | 1 cut(s) | 207 |
| Sse9I | AATT | 7 cut(s) | 27, 49, 95, 119, 330, 379, 434 |
| SsiI | CCGC | 2 cut(s) | 325, 443 |
| SstI | GAGCTC | 1 cut(s) | 404 |
| TaaI | ACNGT | 1 cut(s) | 394 |
| TaqI | TCGA | 1 cut(s) | 202 |
| TasI | AATT | 7 cut(s) | 27, 49, 95, 119, 330, 379, 434 |
| TatI | WGTACW | 1 cut(s) | 389 |
| TauI | GCSGC | 1 cut(s) | 327 |
| TfiI | GAWTC | 1 cut(s) | 72 |
| Tru1I | TTAA | 4 cut(s) | 26, 48, 333, 507 |
| Tru9I | TTAA | 4 cut(s) | 26, 48, 333, 507 |
| TscAI | CASTG | 2 cut(s) | 241, 521 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| TseI | GCWGC | 1 cut(s) | 496 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 5 cut(s) | 53, 102, 107, 112, 296 |
| TspRI | CASTG | 2 cut(s) | 241, 521 |
| XapI | RAATTY | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 2 cut(s) | 123, 271 |