protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 375 |
| AccII | CGCG | 1 cut(s) | 640 |
| AciI | CCGC | 3 cut(s) | 348, 457, 638 |
| AclWI | GGATC | 2 cut(s) | 423, 590 |
| AcoI | YGGCCR | 1 cut(s) | 26 |
| AcsI | RAATTY | 1 cut(s) | 1165 |
| AcuI | CTGAAG | 1 cut(s) | 852 |
| AfaI | GTAC | 2 cut(s) | 198, 718 |
| AflIII | ACRYGT | 1 cut(s) | 298 |
| AgsI | TTSAA | 3 cut(s) | 574, 861, 911 |
| AjiI | CACGTC | 1 cut(s) | 897 |
| AjnI | CCWGG | 1 cut(s) | 772 |
| AluBI | AGCT | 2 cut(s) | 333, 542 |
| AluI | AGCT | 2 cut(s) | 333, 542 |
| AlwI | GGATC | 2 cut(s) | 423, 590 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 773 |
| AoxI | GGCC | 3 cut(s) | 26, 418, 952 |
| ApeKI | GCWGC | 4 cut(s) | 209, 539, 755, 758 |
| ApoI | RAATTY | 1 cut(s) | 1165 |
| AspS9I | GGNCC | 2 cut(s) | 142, 419 |
| AsuHPI | GGTGA | 3 cut(s) | 200, 353, 733 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| BalI | TGGCCA | 1 cut(s) | 28 |
| BbsI | GAAGAC | 2 cut(s) | 382, 791 |
| BbvI | GCAGC | 4 cut(s) | 221, 551, 742, 770 |
| BccI | CCATC | 1 cut(s) | 37 |
| BciT130I | CCWGG | 1 cut(s) | 774 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BfaI | CTAG | 2 cut(s) | 183, 1065 |
| BfmI | CTRYAG | 1 cut(s) | 756 |
| BisI | GCNGC | 5 cut(s) | 210, 348, 540, 756, 759 |
| BlsI | GCNGC | 5 cut(s) | 211, 349, 541, 757, 760 |
| Bme1390I | CCNGG | 1 cut(s) | 774 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmgBI | CACGTC | 1 cut(s) | 897 |
| BmgT120I | GGNCC | 2 cut(s) | 142, 419 |
| BmiI | GGNNCC | 1 cut(s) | 143 |
| BmrFI | CCNGG | 1 cut(s) | 774 |
| BmsI | GCATC | 3 cut(s) | 120, 829, 1083 |
| BpiI | GAAGAC | 2 cut(s) | 382, 791 |
| Bsa29I | ATCGAT | 1 cut(s) | 427 |
| BsaBI | GATNNNNATC | 1 cut(s) | 468 |
| BsaJI | CCNNGG | 1 cut(s) | 67 |
| Bse1I | ACTGG | 1 cut(s) | 1073 |
| Bse3DI | GCAATG | 1 cut(s) | 675 |
| Bse8I | GATNNNNATC | 1 cut(s) | 468 |
| BseBI | CCWGG | 1 cut(s) | 774 |
| BseCI | ATCGAT | 1 cut(s) | 427 |
| BseDI | CCNNGG | 1 cut(s) | 67 |
| BseGI | GGATG | 1 cut(s) | 1098 |
| BseJI | GATNNNNATC | 1 cut(s) | 468 |
| BseMI | GCAATG | 1 cut(s) | 675 |
| BseNI | ACTGG | 1 cut(s) | 1073 |
| BseXI | GCAGC | 4 cut(s) | 221, 551, 742, 770 |
| BsgI | GTGCAG | 1 cut(s) | 558 |
| Bsh1236I | CGCG | 1 cut(s) | 640 |
| Bsh1285I | CGRYCG | 1 cut(s) | 436 |
| BshFI | GGCC | 3 cut(s) | 28, 420, 954 |
| BshVI | ATCGAT | 1 cut(s) | 427 |
| BsiEI | CGRYCG | 1 cut(s) | 436 |
| BsmI | GAATGC | 2 cut(s) | 761, 888 |
| BsnI | GGCC | 3 cut(s) | 28, 420, 954 |
| Bsp1407I | TGTACA | 1 cut(s) | 716 |
| Bsp143I | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| BspACI | CCGC | 3 cut(s) | 348, 457, 638 |
| BspANI | GGCC | 3 cut(s) | 28, 420, 954 |
| BspDI | ATCGAT | 1 cut(s) | 427 |
| BspFNI | CGCG | 1 cut(s) | 640 |
| BspLI | GGNNCC | 1 cut(s) | 143 |
| BspMAI | CTGCAG | 1 cut(s) | 760 |
| BspPI | GGATC | 2 cut(s) | 423, 590 |
| BsrDI | GCAATG | 1 cut(s) | 675 |
| BsrGI | TGTACA | 1 cut(s) | 716 |
| BsrI | ACTGG | 1 cut(s) | 1073 |
| BssECI | CCNNGG | 1 cut(s) | 67 |
| BssMI | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| Bst2UI | CCWGG | 1 cut(s) | 774 |
| Bst4CI | ACNGT | 3 cut(s) | 493, 721, 769 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1011 |
| BstAUI | TGTACA | 1 cut(s) | 716 |
| BstC8I | GCNNGC | 1 cut(s) | 1062 |
| BstF5I | GGATG | 1 cut(s) | 1098 |
| BstFNI | CGCG | 1 cut(s) | 640 |
| BstKTI | GATC | 6 cut(s) | 412, 431, 436, 526, 598, 993 |
| BstMBI | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| BstMCI | CGRYCG | 1 cut(s) | 436 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1011 |
| BstNI | CCWGG | 1 cut(s) | 774 |
| BstNSI | RCATGY | 2 cut(s) | 242, 302 |
| BstSCI | CCNGG | 1 cut(s) | 772 |
| BstSFI | CTRYAG | 1 cut(s) | 756 |
| BstUI | CGCG | 1 cut(s) | 640 |
| BstV1I | GCAGC | 4 cut(s) | 221, 551, 742, 770 |
| BstV2I | GAAGAC | 2 cut(s) | 382, 791 |
| BstX2I | RGATCY | 1 cut(s) | 595 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 36 |
| BstYI | RGATCY | 1 cut(s) | 595 |
| Bsu15I | ATCGAT | 1 cut(s) | 427 |
| BsuRI | GGCC | 3 cut(s) | 28, 420, 954 |
| BsuTUI | ATCGAT | 1 cut(s) | 427 |
| BtrI | CACGTC | 1 cut(s) | 897 |
| BtsCI | GGATG | 1 cut(s) | 1098 |
| BtsI | GCAGTG | 1 cut(s) | 212 |
| BtsIMutI | CAGTG | 1 cut(s) | 212 |
| Cac8I | GCNNGC | 1 cut(s) | 1062 |
| CaiI | CAGNNNCTG | 1 cut(s) | 773 |
| Cfr13I | GGNCC | 2 cut(s) | 142, 419 |
| ClaI | ATCGAT | 1 cut(s) | 427 |
| Csp6I | GTAC | 2 cut(s) | 197, 717 |
| CviAII | CATG | 7 cut(s) | 134, 163, 239, 299, 745, 877, 985 |
| CviJI | RGCY | 8 cut(s) | 28, 73, 173, 333, 420, 542, 660, 954 |
| CviKI_1 | RGCY | 8 cut(s) | 28, 73, 173, 333, 420, 542, 660, 954 |
| CviQI | GTAC | 2 cut(s) | 197, 717 |
| DpnI | GATC | 6 cut(s) | 411, 430, 435, 525, 597, 992 |
| DpnII | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| EaeI | YGGCCR | 1 cut(s) | 26 |
| EciI | GGCGGA | 1 cut(s) | 472 |
| Eco147I | AGGCCT | 1 cut(s) | 954 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 1 cut(s) | 852 |
| EcoRII | CCWGG | 1 cut(s) | 772 |
| EcoT22I | ATGCAT | 1 cut(s) | 135 |
| FaeI | CATG | 7 cut(s) | 137, 166, 242, 302, 748, 880, 988 |
| FatI | CATG | 7 cut(s) | 133, 162, 238, 298, 744, 876, 984 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| Fnu4HI | GCNGC | 5 cut(s) | 210, 348, 540, 756, 759 |
| FokI | GGATG | 1 cut(s) | 1105 |
| Fsp4HI | GCNGC | 5 cut(s) | 210, 348, 540, 756, 759 |
| FspBI | CTAG | 2 cut(s) | 183, 1065 |
| GluI | GCNGC | 5 cut(s) | 210, 348, 540, 756, 759 |
| HaeIII | GGCC | 3 cut(s) | 28, 420, 954 |
| Hin1II | CATG | 7 cut(s) | 137, 166, 242, 302, 748, 880, 988 |
| HinfI | GANTC | 4 cut(s) | 82, 102, 284, 611 |
| HphI | GGTGA | 3 cut(s) | 200, 353, 733 |
| Hpy188I | TCNGA | 3 cut(s) | 330, 433, 838 |
| Hpy188III | TCNNGA | 2 cut(s) | 407, 1090 |
| HpyAV | CCTTC | 1 cut(s) | 691 |
| HpyCH4III | ACNGT | 3 cut(s) | 493, 721, 769 |
| HpyCH4IV | ACGT | 2 cut(s) | 896, 901 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1011 |
| HpySE526I | ACGT | 2 cut(s) | 896, 901 |
| Hsp92II | CATG | 7 cut(s) | 137, 166, 242, 302, 748, 880, 988 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| Kzo9I | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| LpnPI | CCDG | 7 cut(s) | 158, 759, 780, 786, 1012, 1075, 1086 |
| Lsp1109I | GCAGC | 4 cut(s) | 221, 551, 742, 770 |
| LweI | GCATC | 3 cut(s) | 120, 829, 1083 |
| MaeI | CTAG | 2 cut(s) | 183, 1065 |
| MaeII | ACGT | 2 cut(s) | 896, 901 |
| MaeIII | GTNAC | 4 cut(s) | 359, 589, 897, 979 |
| MalI | GATC | 6 cut(s) | 411, 430, 435, 525, 597, 992 |
| MboI | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| MboII | GAAGA | 4 cut(s) | 382, 791, 849, 923 |
| MflI | RGATCY | 1 cut(s) | 595 |
| MlsI | TGGCCA | 1 cut(s) | 28 |
| MluCI | AATT | 8 cut(s) | 34, 125, 192, 309, 342, 519, 1097, 1165 |
| MluNI | TGGCCA | 1 cut(s) | 28 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MnlI | CCTC | 9 cut(s) | 62, 168, 179, 227, 517, 527, 571, 673, 1090 |
| Mox20I | TGGCCA | 1 cut(s) | 28 |
| Mph1103I | ATGCAT | 1 cut(s) | 135 |
| MscI | TGGCCA | 1 cut(s) | 28 |
| MseI | TTAA | 1 cut(s) | 275 |
| MslI | CAYNNNNRTG | 3 cut(s) | 746, 941, 1091 |
| Msp20I | TGGCCA | 1 cut(s) | 28 |
| MspA1I | CMGCKG | 1 cut(s) | 350 |
| MspR9I | CCNGG | 1 cut(s) | 774 |
| Mva1269I | GAATGC | 2 cut(s) | 761, 888 |
| MvaI | CCWGG | 1 cut(s) | 774 |
| MvnI | CGCG | 1 cut(s) | 640 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1011 |
| NdeII | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| NlaIII | CATG | 7 cut(s) | 137, 166, 242, 302, 748, 880, 988 |
| NlaIV | GGNNCC | 1 cut(s) | 143 |
| NmeAIII | GCCGAG | 1 cut(s) | 864 |
| NmuCI | GTSAC | 2 cut(s) | 359, 897 |
| NsiI | ATGCAT | 1 cut(s) | 135 |
| NspI | RCATGY | 2 cut(s) | 242, 302 |
| PceI | AGGCCT | 1 cut(s) | 954 |
| PciI | ACATGT | 1 cut(s) | 298 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 433 |
| PctI | GAATGC | 2 cut(s) | 761, 888 |
| PfeI | GAWTC | 3 cut(s) | 82, 102, 611 |
| PkrI | GCNGC | 5 cut(s) | 211, 349, 541, 757, 760 |
| Ple19I | CGATCG | 1 cut(s) | 436 |
| PleI | GAGTC | 1 cut(s) | 292 |
| PpsI | GAGTC | 1 cut(s) | 292 |
| PscI | ACATGT | 1 cut(s) | 298 |
| PsiI | TTATAA | 1 cut(s) | 375 |
| Psp6I | CCWGG | 1 cut(s) | 772 |
| PspGI | CCWGG | 1 cut(s) | 772 |
| PspN4I | GGNNCC | 1 cut(s) | 143 |
| PspPI | GGNCC | 2 cut(s) | 142, 419 |
| PstI | CTGCAG | 1 cut(s) | 760 |
| PstNI | CAGNNNCTG | 1 cut(s) | 773 |
| PsuI | RGATCY | 1 cut(s) | 595 |
| PvuI | CGATCG | 1 cut(s) | 436 |
| RsaI | GTAC | 2 cut(s) | 198, 718 |
| RsaNI | GTAC | 2 cut(s) | 197, 717 |
| RseI | CAYNNNNRTG | 3 cut(s) | 746, 941, 1091 |
| SaqAI | TTAA | 1 cut(s) | 275 |
| SatI | GCNGC | 5 cut(s) | 210, 348, 540, 756, 759 |
| Sau3AI | GATC | 6 cut(s) | 409, 428, 433, 523, 595, 990 |
| Sau96I | GGNCC | 2 cut(s) | 142, 419 |
| SchI | GAGTC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 1 cut(s) | 774 |
| SfaNI | GCATC | 3 cut(s) | 120, 829, 1083 |
| SfcI | CTRYAG | 1 cut(s) | 756 |
| SinI | GGWCC | 1 cut(s) | 142 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 746, 941, 1091 |
| Sse9I | AATT | 8 cut(s) | 34, 125, 192, 309, 342, 519, 1097, 1165 |
| SseBI | AGGCCT | 1 cut(s) | 954 |
| SsiI | CCGC | 3 cut(s) | 348, 457, 638 |
| SspI | AATATT | 2 cut(s) | 19, 1146 |
| SspMI | CTAG | 2 cut(s) | 183, 1065 |
| StuI | AGGCCT | 1 cut(s) | 954 |
| StyD4I | CCNGG | 1 cut(s) | 772 |
| TaaI | ACNGT | 3 cut(s) | 493, 721, 769 |
| TaiI | ACGT | 2 cut(s) | 899, 904 |
| TaqI | TCGA | 4 cut(s) | 406, 427, 436, 532 |
| TasI | AATT | 8 cut(s) | 34, 125, 192, 309, 342, 519, 1097, 1165 |
| TatI | WGTACW | 1 cut(s) | 716 |
| TauI | GCSGC | 1 cut(s) | 350 |
| TfiI | GAWTC | 3 cut(s) | 82, 102, 611 |
| Tru1I | TTAA | 1 cut(s) | 275 |
| Tru9I | TTAA | 1 cut(s) | 275 |
| TscAI | CASTG | 1 cut(s) | 219 |
| TseFI | GTSAC | 2 cut(s) | 359, 897 |
| TseI | GCWGC | 4 cut(s) | 209, 539, 755, 758 |
| Tsp45I | GTSAC | 2 cut(s) | 359, 897 |
| TspDTI | ATGAA | 7 cut(s) | 137, 150, 710, 799, 801, 1075, 1111 |
| TspGWI | ACGGA | 2 cut(s) | 668, 1092 |
| TspRI | CASTG | 1 cut(s) | 219 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 1165 |
| XceI | RCATGY | 2 cut(s) | 242, 302 |
| XspI | CTAG | 2 cut(s) | 183, 1065 |
| Zsp2I | ATGCAT | 1 cut(s) | 135 |