protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 467 |
| AciI | CCGC | 4 cut(s) | 219, 413, 432, 511 |
| AcoI | YGGCCR | 2 cut(s) | 102, 429 |
| AcsI | RAATTY | 1 cut(s) | 407 |
| AcuI | CTGAAG | 1 cut(s) | 174 |
| AfaI | GTAC | 3 cut(s) | 10, 382, 464 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 535 |
| AgsI | TTSAA | 1 cut(s) | 295 |
| AjnI | CCWGG | 1 cut(s) | 305 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 275, 307 |
| Alw26I | GTCTC | 1 cut(s) | 325 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 152 |
| Ama87I | CYCGRG | 2 cut(s) | 81, 478 |
| AoxI | GGCC | 2 cut(s) | 102, 429 |
| ApoI | RAATTY | 1 cut(s) | 407 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 290 |
| AsuC2I | CCSGG | 2 cut(s) | 479, 480 |
| AsuHPI | GGTGA | 2 cut(s) | 97, 557 |
| AvaI | CYCGRG | 2 cut(s) | 81, 478 |
| BalI | TGGCCA | 1 cut(s) | 104 |
| BauI | CACGAG | 2 cut(s) | 335, 369 |
| BccI | CCATC | 1 cut(s) | 536 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 473, 507 |
| BciT130I | CCWGG | 1 cut(s) | 307 |
| BclI | TGATCA | 1 cut(s) | 373 |
| BcnI | CCSGG | 2 cut(s) | 479, 480 |
| BcoDI | GTCTC | 1 cut(s) | 325 |
| BglII | AGATCT | 1 cut(s) | 109 |
| BisI | GCNGC | 1 cut(s) | 432 |
| BlsI | GCNGC | 1 cut(s) | 433 |
| BmcAI | AGTACT | 1 cut(s) | 10 |
| Bme1390I | CCNGG | 3 cut(s) | 307, 479, 480 |
| BmeT110I | CYCGRG | 2 cut(s) | 81, 478 |
| BmrFI | CCNGG | 3 cut(s) | 307, 479, 480 |
| BmsI | GCATC | 2 cut(s) | 139, 458 |
| BpmI | CTGGAG | 1 cut(s) | 94 |
| BpuMI | CCSGG | 2 cut(s) | 479, 480 |
| BsaJI | CCNNGG | 4 cut(s) | 189, 261, 305, 478 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 535 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| BseBI | CCWGG | 1 cut(s) | 307 |
| BseDI | CCNNGG | 4 cut(s) | 189, 261, 305, 478 |
| BseGI | GGATG | 4 cut(s) | 124, 136, 180, 547 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 535 |
| BseMII | CTCAG | 1 cut(s) | 216 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| Bsh1236I | CGCG | 1 cut(s) | 467 |
| BshFI | GGCC | 2 cut(s) | 104, 431 |
| BsiHKCI | CYCGRG | 2 cut(s) | 81, 478 |
| BsiSI | CCGG | 1 cut(s) | 479 |
| BsiWI | CGTACG | 1 cut(s) | 462 |
| BslFI | GGGAC | 2 cut(s) | 235, 288 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 535 |
| BsmAI | GTCTC | 1 cut(s) | 325 |
| BsmFI | GGGAC | 2 cut(s) | 235, 288 |
| BsmI | GAATGC | 2 cut(s) | 190, 475 |
| BsnI | GGCC | 2 cut(s) | 104, 431 |
| BsoBI | CYCGRG | 2 cut(s) | 81, 478 |
| Bsp143I | GATC | 2 cut(s) | 109, 373 |
| Bsp19I | CCATGG | 1 cut(s) | 261 |
| BspACI | CCGC | 4 cut(s) | 219, 413, 432, 511 |
| BspANI | GGCC | 2 cut(s) | 104, 431 |
| BspCNI | CTCAG | 1 cut(s) | 217 |
| BspFNI | CGCG | 1 cut(s) | 467 |
| BspHI | TCATGA | 1 cut(s) | 505 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssECI | CCNNGG | 4 cut(s) | 189, 261, 305, 478 |
| BssMI | GATC | 2 cut(s) | 109, 373 |
| BssSI | CACGAG | 2 cut(s) | 335, 369 |
| BssT1I | CCWWGG | 1 cut(s) | 261 |
| Bst2BI | CACGAG | 2 cut(s) | 335, 369 |
| Bst2UI | CCWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 2 cut(s) | 19, 462 |
| BstDEI | CTNAG | 1 cut(s) | 225 |
| BstDSI | CCRYGG | 1 cut(s) | 261 |
| BstF5I | GGATG | 4 cut(s) | 124, 136, 180, 547 |
| BstFNI | CGCG | 1 cut(s) | 467 |
| BstKTI | GATC | 2 cut(s) | 112, 376 |
| BstMAI | GTCTC | 1 cut(s) | 325 |
| BstMBI | GATC | 2 cut(s) | 109, 373 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 200, 266, 365, 419, 428 |
| BstNI | CCWGG | 1 cut(s) | 307 |
| BstNSI | RCATGY | 1 cut(s) | 203 |
| BstSCI | CCNGG | 3 cut(s) | 305, 477, 478 |
| BstUI | CGCG | 1 cut(s) | 467 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BsuRI | GGCC | 2 cut(s) | 104, 431 |
| BtgI | CCRYGG | 1 cut(s) | 261 |
| BtsCI | GGATG | 4 cut(s) | 124, 136, 180, 547 |
| BtsIMutI | CAGTG | 2 cut(s) | 70, 250 |
| CaiI | CAGNNNCTG | 1 cut(s) | 152 |
| CciI | TCATGA | 1 cut(s) | 505 |
| Cfr9I | CCCGGG | 1 cut(s) | 478 |
| CseI | GACGC | 1 cut(s) | 365 |
| Csp6I | GTAC | 3 cut(s) | 9, 381, 463 |
| CviAII | CATG | 4 cut(s) | 200, 262, 270, 506 |
| CviJI | RGCY | 5 cut(s) | 104, 194, 260, 368, 431 |
| CviKI_1 | RGCY | 5 cut(s) | 104, 194, 260, 368, 431 |
| CviQI | GTAC | 3 cut(s) | 9, 381, 463 |
| DdeI | CTNAG | 1 cut(s) | 225 |
| DpnI | GATC | 2 cut(s) | 111, 375 |
| DpnII | GATC | 2 cut(s) | 109, 373 |
| EaeI | YGGCCR | 2 cut(s) | 102, 429 |
| Eco130I | CCWWGG | 1 cut(s) | 261 |
| Eco57I | CTGAAG | 1 cut(s) | 174 |
| Eco88I | CYCGRG | 2 cut(s) | 81, 478 |
| EcoRII | CCWGG | 1 cut(s) | 305 |
| EcoT14I | CCWWGG | 1 cut(s) | 261 |
| ErhI | CCWWGG | 1 cut(s) | 261 |
| FaeI | CATG | 4 cut(s) | 203, 265, 273, 509 |
| FaqI | GGGAC | 2 cut(s) | 235, 288 |
| FatI | CATG | 4 cut(s) | 199, 261, 269, 505 |
| FauI | CCCGC | 1 cut(s) | 212 |
| FbaI | TGATCA | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 1 cut(s) | 432 |
| FokI | GGATG | 4 cut(s) | 123, 131, 187, 554 |
| Fsp4HI | GCNGC | 1 cut(s) | 432 |
| GluI | GCNGC | 1 cut(s) | 432 |
| GsuI | CTGGAG | 1 cut(s) | 94 |
| HaeIII | GGCC | 2 cut(s) | 104, 431 |
| HapII | CCGG | 1 cut(s) | 479 |
| HgaI | GACGC | 1 cut(s) | 365 |
| Hin1II | CATG | 4 cut(s) | 203, 265, 273, 509 |
| HpaII | CCGG | 1 cut(s) | 479 |
| HphI | GGTGA | 2 cut(s) | 97, 557 |
| Hpy188I | TCNGA | 1 cut(s) | 313 |
| Hpy188III | TCNNGA | 3 cut(s) | 41, 371, 506 |
| Hpy99I | CGWCG | 1 cut(s) | 359 |
| HpyCH4III | ACNGT | 2 cut(s) | 19, 462 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 449, 560 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 200, 266, 365, 419, 428 |
| HpyF3I | CTNAG | 1 cut(s) | 225 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92II | CATG | 4 cut(s) | 203, 265, 273, 509 |
| Ksp22I | TGATCA | 1 cut(s) | 373 |
| Kzo9I | GATC | 2 cut(s) | 109, 373 |
| LpnPI | CCDG | 8 cut(s) | 58, 159, 292, 319, 345, 350, 459, 492 |
| LweI | GCATC | 2 cut(s) | 139, 458 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 1 cut(s) | 19 |
| MalI | GATC | 2 cut(s) | 111, 375 |
| MboI | GATC | 2 cut(s) | 109, 373 |
| MboII | GAAGA | 4 cut(s) | 190, 193, 332, 517 |
| MfeI | CAATTG | 1 cut(s) | 33 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MlsI | TGGCCA | 1 cut(s) | 104 |
| MluCI | AATT | 2 cut(s) | 33, 407 |
| MluNI | TGGCCA | 1 cut(s) | 104 |
| MnlI | CCTC | 4 cut(s) | 81, 184, 268, 532 |
| Mox20I | TGGCCA | 1 cut(s) | 104 |
| MroXI | GAANNNNTTC | 1 cut(s) | 290 |
| MscI | TGGCCA | 1 cut(s) | 104 |
| MseI | TTAA | 1 cut(s) | 51 |
| MslI | CAYNNNNRTG | 1 cut(s) | 260 |
| Msp20I | TGGCCA | 1 cut(s) | 104 |
| MspI | CCGG | 1 cut(s) | 479 |
| MspR9I | CCNGG | 3 cut(s) | 307, 479, 480 |
| MunI | CAATTG | 1 cut(s) | 33 |
| Mva1269I | GAATGC | 2 cut(s) | 190, 475 |
| MvaI | CCWGG | 1 cut(s) | 307 |
| MvnI | CGCG | 1 cut(s) | 467 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 200, 266, 365, 419, 428 |
| NciI | CCSGG | 2 cut(s) | 479, 480 |
| NcoI | CCATGG | 1 cut(s) | 261 |
| NdeII | GATC | 2 cut(s) | 109, 373 |
| NlaIII | CATG | 4 cut(s) | 203, 265, 273, 509 |
| NmeAIII | GCCGAG | 1 cut(s) | 214 |
| NspI | RCATGY | 1 cut(s) | 203 |
| PagI | TCATGA | 1 cut(s) | 505 |
| PctI | GAATGC | 2 cut(s) | 190, 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 290 |
| Pfl23II | CGTACG | 1 cut(s) | 462 |
| PkrI | GCNGC | 1 cut(s) | 433 |
| Psp6I | CCWGG | 1 cut(s) | 305 |
| PspGI | CCWGG | 1 cut(s) | 305 |
| PspLI | CGTACG | 1 cut(s) | 462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 152 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 3 cut(s) | 10, 382, 464 |
| RsaNI | GTAC | 3 cut(s) | 9, 381, 463 |
| RseI | CAYNNNNRTG | 1 cut(s) | 260 |
| SaqAI | TTAA | 1 cut(s) | 51 |
| SatI | GCNGC | 1 cut(s) | 432 |
| Sau3AI | GATC | 2 cut(s) | 109, 373 |
| ScaI | AGTACT | 1 cut(s) | 10 |
| ScrFI | CCNGG | 3 cut(s) | 307, 479, 480 |
| SetI | ASST | 4 cut(s) | 279, 304, 311, 382 |
| SfaNI | GCATC | 2 cut(s) | 139, 458 |
| SmaI | CCCGGG | 1 cut(s) | 480 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 260 |
| Sse9I | AATT | 2 cut(s) | 33, 407 |
| SsiI | CCGC | 4 cut(s) | 219, 413, 432, 511 |
| StyD4I | CCNGG | 3 cut(s) | 305, 477, 478 |
| StyI | CCWWGG | 1 cut(s) | 261 |
| TaaI | ACNGT | 2 cut(s) | 19, 462 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 1 cut(s) | 354 |
| TasI | AATT | 2 cut(s) | 33, 407 |
| TatI | WGTACW | 1 cut(s) | 8 |
| TauI | GCSGC | 1 cut(s) | 434 |
| Tru1I | TTAA | 1 cut(s) | 51 |
| Tru9I | TTAA | 1 cut(s) | 51 |
| TscAI | CASTG | 2 cut(s) | 77, 250 |
| TspDTI | ATGAA | 2 cut(s) | 191, 494 |
| TspGWI | ACGGA | 1 cut(s) | 518 |
| TspMI | CCCGGG | 1 cut(s) | 478 |
| TspRI | CASTG | 2 cut(s) | 77, 250 |
| XapI | RAATTY | 1 cut(s) | 407 |
| XceI | RCATGY | 1 cut(s) | 203 |
| XmaI | CCCGGG | 1 cut(s) | 478 |
| XmnI | GAANNNNTTC | 1 cut(s) | 290 |
| ZrmI | AGTACT | 1 cut(s) | 10 |