protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 178 - 288 | 1.1e-19 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 360, 677 |
| AclI | AACGTT | 2 cut(s) | 93, 1011 |
| AcsI | RAATTY | 5 cut(s) | 86, 103, 140, 240, 449 |
| AcvI | CACGTG | 1 cut(s) | 479 |
| AfaI | GTAC | 2 cut(s) | 48, 556 |
| AgeI | ACCGGT | 1 cut(s) | 632 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 60 |
| AjnI | CCWGG | 1 cut(s) | 610 |
| AluBI | AGCT | 4 cut(s) | 39, 119, 262, 548 |
| AluI | AGCT | 4 cut(s) | 39, 119, 262, 548 |
| Alw21I | GWGCWC | 1 cut(s) | 571 |
| Alw26I | GTCTC | 3 cut(s) | 273, 641, 823 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 611 |
| AoxI | GGCC | 1 cut(s) | 799 |
| ApeKI | GCWGC | 3 cut(s) | 332, 545, 827 |
| ApoI | RAATTY | 5 cut(s) | 86, 103, 140, 240, 449 |
| AsiGI | ACCGGT | 1 cut(s) | 632 |
| AspLEI | GCGC | 1 cut(s) | 617 |
| AspS9I | GGNCC | 2 cut(s) | 774, 983 |
| AsuC2I | CCSGG | 1 cut(s) | 170 |
| AvaII | GGWCC | 2 cut(s) | 774, 983 |
| BaeGI | GKGCMC | 1 cut(s) | 856 |
| BbrPI | CACGTG | 1 cut(s) | 479 |
| Bbv12I | GWGCWC | 1 cut(s) | 571 |
| BbvI | GCAGC | 3 cut(s) | 344, 557, 814 |
| BccI | CCATC | 2 cut(s) | 617, 866 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 510, 544 |
| BciT130I | CCWGG | 1 cut(s) | 612 |
| BclI | TGATCA | 1 cut(s) | 837 |
| BcnI | CCSGG | 1 cut(s) | 170 |
| BcoDI | GTCTC | 3 cut(s) | 273, 641, 823 |
| BfmI | CTRYAG | 3 cut(s) | 543, 561, 594 |
| BisI | GCNGC | 3 cut(s) | 333, 546, 828 |
| BlsI | GCNGC | 3 cut(s) | 334, 547, 829 |
| Bme1390I | CCNGG | 2 cut(s) | 170, 612 |
| Bme18I | GGWCC | 2 cut(s) | 774, 983 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 2 cut(s) | 774, 983 |
| BmrFI | CCNGG | 2 cut(s) | 170, 612 |
| BmrI | ACTGGG | 1 cut(s) | 341 |
| BmsI | GCATC | 1 cut(s) | 536 |
| BmuI | ACTGGG | 1 cut(s) | 341 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BpuMI | CCSGG | 1 cut(s) | 170 |
| Bsa29I | ATCGAT | 1 cut(s) | 530 |
| BsaAI | YACGTR | 1 cut(s) | 479 |
| BsaBI | GATNNNNATC | 2 cut(s) | 836, 890 |
| BsaI | GGTCTC | 1 cut(s) | 641 |
| BsaWI | WCCGGW | 1 cut(s) | 632 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 413, 443 |
| Bse118I | RCCGGY | 1 cut(s) | 632 |
| Bse1I | ACTGG | 1 cut(s) | 347 |
| Bse8I | GATNNNNATC | 2 cut(s) | 836, 890 |
| BseBI | CCWGG | 1 cut(s) | 612 |
| BseCI | ATCGAT | 1 cut(s) | 530 |
| BseJI | GATNNNNATC | 2 cut(s) | 836, 890 |
| BseMII | CTCAG | 1 cut(s) | 696 |
| BseNI | ACTGG | 1 cut(s) | 347 |
| BseSI | GKGCMC | 1 cut(s) | 856 |
| BseXI | GCAGC | 3 cut(s) | 344, 557, 814 |
| BsgI | GTGCAG | 1 cut(s) | 351 |
| BshFI | GGCC | 1 cut(s) | 801 |
| BshTI | ACCGGT | 1 cut(s) | 632 |
| BshVI | ATCGAT | 1 cut(s) | 530 |
| BsiHKAI | GWGCWC | 1 cut(s) | 571 |
| BsiSI | CCGG | 2 cut(s) | 170, 633 |
| BslFI | GGGAC | 2 cut(s) | 553, 747 |
| BsmAI | GTCTC | 3 cut(s) | 273, 641, 823 |
| BsmBI | CGTCTC | 1 cut(s) | 273 |
| BsmFI | GGGAC | 2 cut(s) | 553, 747 |
| BsmI | GAATGC | 1 cut(s) | 599 |
| BsnI | GGCC | 1 cut(s) | 801 |
| Bso31I | GGTCTC | 1 cut(s) | 641 |
| Bsp1286I | GDGCHC | 2 cut(s) | 571, 856 |
| Bsp1407I | TGTACA | 1 cut(s) | 554 |
| Bsp143I | GATC | 1 cut(s) | 837 |
| BspANI | GGCC | 1 cut(s) | 801 |
| BspCNI | CTCAG | 1 cut(s) | 695 |
| BspDI | ATCGAT | 1 cut(s) | 530 |
| BspMAI | CTGCAG | 1 cut(s) | 547 |
| BspTNI | GGTCTC | 1 cut(s) | 641 |
| BsrFI | RCCGGY | 1 cut(s) | 632 |
| BsrGI | TGTACA | 1 cut(s) | 554 |
| BsrI | ACTGG | 1 cut(s) | 347 |
| BssAI | RCCGGY | 1 cut(s) | 632 |
| BssMI | GATC | 1 cut(s) | 837 |
| Bst2UI | CCWGG | 1 cut(s) | 612 |
| Bst4CI | ACNGT | 1 cut(s) | 607 |
| Bst6I | CTCTTC | 1 cut(s) | 116 |
| BstAUI | TGTACA | 1 cut(s) | 554 |
| BstBAI | YACGTR | 1 cut(s) | 479 |
| BstDEI | CTNAG | 2 cut(s) | 35, 682 |
| BstHHI | GCGC | 1 cut(s) | 617 |
| BstKTI | GATC | 1 cut(s) | 840 |
| BstMAI | GTCTC | 3 cut(s) | 273, 641, 823 |
| BstMBI | GATC | 1 cut(s) | 837 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 170 |
| BstNI | CCWGG | 1 cut(s) | 612 |
| BstNSI | RCATGY | 2 cut(s) | 137, 973 |
| BstSCI | CCNGG | 2 cut(s) | 168, 610 |
| BstSFI | CTRYAG | 3 cut(s) | 543, 561, 594 |
| BstSLI | GKGCMC | 1 cut(s) | 856 |
| BstV1I | GCAGC | 3 cut(s) | 344, 557, 814 |
| Bsu15I | ATCGAT | 1 cut(s) | 530 |
| BsuRI | GGCC | 1 cut(s) | 801 |
| BsuTUI | ATCGAT | 1 cut(s) | 530 |
| BtgZI | GCGATG | 1 cut(s) | 845 |
| CaiI | CAGNNNCTG | 1 cut(s) | 611 |
| CfoI | GCGC | 1 cut(s) | 617 |
| Cfr10I | RCCGGY | 1 cut(s) | 632 |
| Cfr13I | GGNCC | 2 cut(s) | 774, 983 |
| ClaI | ATCGAT | 1 cut(s) | 530 |
| Csp6I | GTAC | 2 cut(s) | 47, 555 |
| CspAI | ACCGGT | 1 cut(s) | 632 |
| CviAII | CATG | 6 cut(s) | 134, 178, 446, 849, 895, 970 |
| CviJI | RGCY | 5 cut(s) | 39, 119, 262, 548, 801 |
| CviKI_1 | RGCY | 5 cut(s) | 39, 119, 262, 548, 801 |
| CviQI | GTAC | 2 cut(s) | 47, 555 |
| DdeI | CTNAG | 2 cut(s) | 35, 682 |
| DpnI | GATC | 1 cut(s) | 839 |
| DpnII | GATC | 1 cut(s) | 837 |
| DriI | GACNNNNNGTC | 1 cut(s) | 60 |
| Eam1104I | CTCTTC | 1 cut(s) | 116 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 60 |
| EarI | CTCTTC | 1 cut(s) | 116 |
| Eco147I | AGGCCT | 1 cut(s) | 801 |
| Eco31I | GGTCTC | 1 cut(s) | 641 |
| Eco47I | GGWCC | 2 cut(s) | 774, 983 |
| Eco72I | CACGTG | 1 cut(s) | 479 |
| EcoRII | CCWGG | 1 cut(s) | 610 |
| EcoT22I | ATGCAT | 3 cut(s) | 294, 447, 654 |
| Esp3I | CGTCTC | 1 cut(s) | 273 |
| FaeI | CATG | 6 cut(s) | 137, 181, 449, 852, 898, 973 |
| FaqI | GGGAC | 2 cut(s) | 553, 747 |
| FatI | CATG | 6 cut(s) | 133, 177, 445, 848, 894, 969 |
| FauNDI | CATATG | 1 cut(s) | 153 |
| FbaI | TGATCA | 1 cut(s) | 837 |
| Fnu4HI | GCNGC | 3 cut(s) | 333, 546, 828 |
| Fsp4HI | GCNGC | 3 cut(s) | 333, 546, 828 |
| GlaI | GCGC | 1 cut(s) | 616 |
| GluI | GCNGC | 3 cut(s) | 333, 546, 828 |
| HaeIII | GGCC | 1 cut(s) | 801 |
| HapII | CCGG | 2 cut(s) | 170, 633 |
| HhaI | GCGC | 1 cut(s) | 617 |
| Hin1II | CATG | 6 cut(s) | 137, 181, 449, 852, 898, 973 |
| Hin6I | GCGC | 1 cut(s) | 615 |
| HinP1I | GCGC | 1 cut(s) | 615 |
| HinfI | GANTC | 3 cut(s) | 21, 424, 496 |
| HpaII | CCGG | 2 cut(s) | 170, 633 |
| Hpy166II | GTNNAC | 2 cut(s) | 482, 975 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 685 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 233 |
| Hpy8I | GTNNAC | 2 cut(s) | 482, 975 |
| Hpy99I | CGWCG | 1 cut(s) | 926 |
| HpyAV | CCTTC | 1 cut(s) | 996 |
| HpyCH4III | ACNGT | 1 cut(s) | 607 |
| HpyCH4IV | ACGT | 4 cut(s) | 93, 478, 725, 1011 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 170 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 682 |
| HpySE526I | ACGT | 4 cut(s) | 93, 478, 725, 1011 |
| Hsp92II | CATG | 6 cut(s) | 137, 181, 449, 852, 898, 973 |
| HspAI | GCGC | 1 cut(s) | 615 |
| Ksp22I | TGATCA | 1 cut(s) | 837 |
| Kzo9I | GATC | 1 cut(s) | 837 |
| LpnPI | CCDG | 7 cut(s) | 50, 93, 183, 360, 597, 624, 646 |
| Lsp1109I | GCAGC | 3 cut(s) | 344, 557, 814 |
| LweI | GCATC | 1 cut(s) | 536 |
| MaeII | ACGT | 4 cut(s) | 93, 478, 725, 1011 |
| MaeIII | GTNAC | 6 cut(s) | 52, 145, 349, 429, 577, 626 |
| MalI | GATC | 1 cut(s) | 839 |
| MboI | GATC | 1 cut(s) | 837 |
| MboII | GAAGA | 3 cut(s) | 103, 770, 798 |
| MhlI | GDGCHC | 2 cut(s) | 571, 856 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MnlI | CCTC | 5 cut(s) | 122, 409, 508, 715, 962 |
| Mph1103I | ATGCAT | 3 cut(s) | 294, 447, 654 |
| MseI | TTAA | 4 cut(s) | 90, 309, 509, 666 |
| MslI | CAYNNNNRTG | 3 cut(s) | 788, 847, 934 |
| MspI | CCGG | 2 cut(s) | 170, 633 |
| MspR9I | CCNGG | 2 cut(s) | 170, 612 |
| Mva1269I | GAATGC | 1 cut(s) | 599 |
| MvaI | CCWGG | 1 cut(s) | 612 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 170 |
| NciI | CCSGG | 1 cut(s) | 170 |
| NdeI | CATATG | 1 cut(s) | 153 |
| NdeII | GATC | 1 cut(s) | 837 |
| NlaIII | CATG | 6 cut(s) | 137, 181, 449, 852, 898, 973 |
| NmuCI | GTSAC | 1 cut(s) | 52 |
| NsiI | ATGCAT | 3 cut(s) | 294, 447, 654 |
| NspI | RCATGY | 2 cut(s) | 137, 973 |
| PceI | AGGCCT | 1 cut(s) | 801 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 722 |
| PctI | GAATGC | 1 cut(s) | 599 |
| PfeI | GAWTC | 2 cut(s) | 21, 496 |
| PinAI | ACCGGT | 1 cut(s) | 632 |
| PkrI | GCNGC | 3 cut(s) | 334, 547, 829 |
| PleI | GAGTC | 1 cut(s) | 432 |
| PmaCI | CACGTG | 1 cut(s) | 479 |
| PmlI | CACGTG | 1 cut(s) | 479 |
| PpsI | GAGTC | 1 cut(s) | 432 |
| Ppu21I | YACGTR | 1 cut(s) | 479 |
| PsiI | TTATAA | 2 cut(s) | 360, 677 |
| Psp1406I | AACGTT | 2 cut(s) | 93, 1011 |
| Psp6I | CCWGG | 1 cut(s) | 610 |
| PspCI | CACGTG | 1 cut(s) | 479 |
| PspGI | CCWGG | 1 cut(s) | 610 |
| PspPI | GGNCC | 2 cut(s) | 774, 983 |
| PstI | CTGCAG | 1 cut(s) | 547 |
| PstNI | CAGNNNCTG | 1 cut(s) | 611 |
| RsaI | GTAC | 2 cut(s) | 48, 556 |
| RsaNI | GTAC | 2 cut(s) | 47, 555 |
| RseI | CAYNNNNRTG | 3 cut(s) | 788, 847, 934 |
| SaqAI | TTAA | 4 cut(s) | 90, 309, 509, 666 |
| SatI | GCNGC | 3 cut(s) | 333, 546, 828 |
| Sau3AI | GATC | 1 cut(s) | 837 |
| Sau96I | GGNCC | 2 cut(s) | 774, 983 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 2 cut(s) | 170, 612 |
| SduI | GDGCHC | 2 cut(s) | 571, 856 |
| SfaNI | GCATC | 1 cut(s) | 536 |
| SfcI | CTRYAG | 3 cut(s) | 543, 561, 594 |
| SinI | GGWCC | 2 cut(s) | 774, 983 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 788, 847, 934 |
| SmlI | CTYRAG | 1 cut(s) | 263 |
| SmoI | CTYRAG | 1 cut(s) | 263 |
| SseBI | AGGCCT | 1 cut(s) | 801 |
| StuI | AGGCCT | 1 cut(s) | 801 |
| StyD4I | CCNGG | 2 cut(s) | 168, 610 |
| TaaI | ACNGT | 1 cut(s) | 607 |
| TaiI | ACGT | 4 cut(s) | 96, 481, 728, 1014 |
| TaqI | TCGA | 3 cut(s) | 24, 530, 989 |
| TatI | WGTACW | 1 cut(s) | 554 |
| TfiI | GAWTC | 2 cut(s) | 21, 496 |
| Tru1I | TTAA | 4 cut(s) | 90, 309, 509, 666 |
| Tru9I | TTAA | 4 cut(s) | 90, 309, 509, 666 |
| TseFI | GTSAC | 1 cut(s) | 52 |
| TseI | GCWGC | 3 cut(s) | 332, 545, 827 |
| Tsp45I | GTSAC | 1 cut(s) | 52 |
| TspDTI | ATGAA | 4 cut(s) | 17, 462, 548, 837 |
| VpaK11BI | GGWCC | 2 cut(s) | 774, 983 |
| XapI | RAATTY | 5 cut(s) | 86, 103, 140, 240, 449 |
| XceI | RCATGY | 2 cut(s) | 137, 973 |
| Zsp2I | ATGCAT | 3 cut(s) | 294, 447, 654 |