protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 16 - 42 | 8.8e-06 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 29 - 103 | 3.8e-09 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 139 - 221 | 5e-07 | Ankyrin repeats (3 copies) |
| eIF2A | PF08662 | 523 - 616 | 4.9e-16 | Eukaryotic translation initiation factor eIF2A |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 996 |
| AccI | GTMKAC | 2 cut(s) | 579, 1003 |
| AccII | CGCG | 2 cut(s) | 408, 1098 |
| AciI | CCGC | 4 cut(s) | 219, 401, 406, 408 |
| AclI | AACGTT | 1 cut(s) | 1461 |
| AclWI | GGATC | 5 cut(s) | 149, 692, 1181, 1302, 1845 |
| AcoI | YGGCCR | 2 cut(s) | 442, 1810 |
| AcuI | CTGAAG | 4 cut(s) | 123, 339, 1403, 1593 |
| AfaI | GTAC | 4 cut(s) | 366, 778, 940, 1011 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 418, 1181, 1613 |
| AflII | CTTAAG | 1 cut(s) | 794 |
| AflIII | ACRYGT | 1 cut(s) | 1006 |
| AgeI | ACCGGT | 1 cut(s) | 527 |
| AgsI | TTSAA | 9 cut(s) | 166, 295, 306, 517, 788, 1138, 1360, 1639, 1669 |
| AjnI | CCWGG | 4 cut(s) | 188, 269, 1348, 1762 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 275, 307 |
| Alw21I | GWGCWC | 1 cut(s) | 382 |
| Alw26I | GTCTC | 1 cut(s) | 1270 |
| AlwI | GGATC | 5 cut(s) | 149, 692, 1181, 1302, 1845 |
| Ama87I | CYCGRG | 1 cut(s) | 1721 |
| AoxI | GGCC | 5 cut(s) | 192, 409, 442, 1615, 1810 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1131, 1163 |
| AsiGI | ACCGGT | 1 cut(s) | 527 |
| AspLEI | GCGC | 1 cut(s) | 1478 |
| AspS9I | GGNCC | 3 cut(s) | 192, 403, 805 |
| AsuC2I | CCSGG | 1 cut(s) | 1738 |
| AsuHPI | GGTGA | 4 cut(s) | 94, 1201, 1225, 1596 |
| AsuNHI | GCTAGC | 2 cut(s) | 962, 1117 |
| AvaI | CYCGRG | 1 cut(s) | 1721 |
| AvaII | GGWCC | 2 cut(s) | 403, 805 |
| AxyI | CCTNAGG | 1 cut(s) | 1035 |
| BalI | TGGCCA | 2 cut(s) | 444, 1812 |
| Bbv12I | GWGCWC | 1 cut(s) | 382 |
| BbvCI | CCTCAGC | 1 cut(s) | 1290 |
| BbvI | GCAGC | 1 cut(s) | 17 |
| BccI | CCATC | 4 cut(s) | 581, 721, 1334, 1802 |
| BceAI | ACGGC | 2 cut(s) | 273, 1731 |
| BciT130I | CCWGG | 4 cut(s) | 190, 271, 1350, 1764 |
| BciVI | GTATCC | 2 cut(s) | 619, 1040 |
| BcnI | CCSGG | 1 cut(s) | 1738 |
| BcoDI | GTCTC | 1 cut(s) | 1270 |
| BfaI | CTAG | 5 cut(s) | 21, 617, 774, 963, 1118 |
| BfoI | RGCGCY | 1 cut(s) | 1479 |
| BfrI | CTTAAG | 1 cut(s) | 794 |
| BfuI | GTATCC | 2 cut(s) | 619, 1040 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 200 |
| BisI | GCNGC | 2 cut(s) | 6, 409 |
| BlpI | GCTNAGC | 1 cut(s) | 813 |
| BlsI | GCNGC | 2 cut(s) | 7, 410 |
| BmcAI | AGTACT | 1 cut(s) | 778 |
| Bme1390I | CCNGG | 5 cut(s) | 190, 271, 1350, 1738, 1764 |
| Bme18I | GGWCC | 2 cut(s) | 403, 805 |
| BmeT110I | CYCGRG | 1 cut(s) | 1721 |
| BmgT120I | GGNCC | 3 cut(s) | 192, 403, 805 |
| BmiI | GGNNCC | 3 cut(s) | 806, 1645, 1730 |
| BmrFI | CCNGG | 5 cut(s) | 190, 271, 1350, 1738, 1764 |
| BmsI | GCATC | 2 cut(s) | 217, 258 |
| BmtI | GCTAGC | 2 cut(s) | 966, 1121 |
| BpmI | CTGGAG | 2 cut(s) | 325, 396 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 813 |
| BpuEI | CTTGAG | 1 cut(s) | 882 |
| BpuMI | CCSGG | 1 cut(s) | 1738 |
| BsaAI | YACGTR | 2 cut(s) | 1009, 1028 |
| BsaJI | CCNNGG | 4 cut(s) | 189, 406, 1349, 1763 |
| BsaWI | WCCGGW | 1 cut(s) | 527 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1744, 1774 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 418, 1181, 1613 |
| Bse118I | RCCGGY | 1 cut(s) | 527 |
| Bse1I | ACTGG | 2 cut(s) | 74, 511 |
| Bse21I | CCTNAGG | 1 cut(s) | 1035 |
| BseBI | CCWGG | 4 cut(s) | 190, 271, 1350, 1764 |
| BseDI | CCNNGG | 4 cut(s) | 189, 406, 1349, 1763 |
| BseGI | GGATG | 3 cut(s) | 232, 1054, 1681 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 418, 1181, 1613 |
| BseMII | CTCAG | 7 cut(s) | 222, 725, 804, 1026, 1281, 1520, 1585 |
| BseNI | ACTGG | 2 cut(s) | 74, 511 |
| BseRI | GAGGAG | 2 cut(s) | 588, 1076 |
| BseXI | GCAGC | 1 cut(s) | 17 |
| Bsh1236I | CGCG | 2 cut(s) | 408, 1098 |
| BshFI | GGCC | 5 cut(s) | 194, 411, 444, 1617, 1812 |
| BshTI | ACCGGT | 1 cut(s) | 527 |
| BsiHKAI | GWGCWC | 1 cut(s) | 382 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1721 |
| BsiSI | CCGG | 2 cut(s) | 528, 1737 |
| BslFI | GGGAC | 6 cut(s) | 2, 128, 818, 875, 1597, 1780 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 418, 1181, 1613 |
| BsmAI | GTCTC | 1 cut(s) | 1270 |
| BsmFI | GGGAC | 6 cut(s) | 2, 128, 818, 875, 1597, 1780 |
| BsnI | GGCC | 5 cut(s) | 194, 411, 444, 1617, 1812 |
| BsoBI | CYCGRG | 1 cut(s) | 1721 |
| Bsp1286I | GDGCHC | 1 cut(s) | 382 |
| Bsp143I | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 813 |
| Bsp68I | TCGCGA | 1 cut(s) | 1098 |
| BspACI | CCGC | 4 cut(s) | 219, 401, 406, 408 |
| BspANI | GGCC | 5 cut(s) | 194, 411, 444, 1617, 1812 |
| BspCNI | CTCAG | 7 cut(s) | 223, 726, 805, 1027, 1282, 1519, 1584 |
| BspFNI | CGCG | 2 cut(s) | 408, 1098 |
| BspHI | TCATGA | 1 cut(s) | 1774 |
| BspLI | GGNNCC | 3 cut(s) | 806, 1645, 1730 |
| BspOI | GCTAGC | 2 cut(s) | 966, 1121 |
| BspPI | GGATC | 5 cut(s) | 149, 692, 1181, 1302, 1845 |
| BspQI | GCTCTTC | 1 cut(s) | 501 |
| BspTI | CTTAAG | 1 cut(s) | 794 |
| BsrFI | RCCGGY | 1 cut(s) | 527 |
| BsrI | ACTGG | 2 cut(s) | 74, 511 |
| BssAI | RCCGGY | 1 cut(s) | 527 |
| BssECI | CCNNGG | 4 cut(s) | 189, 406, 1349, 1763 |
| BssMI | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| BssNAI | GTATAC | 1 cut(s) | 1004 |
| Bst1107I | GTATAC | 1 cut(s) | 1004 |
| Bst2UI | CCWGG | 4 cut(s) | 190, 271, 1350, 1764 |
| Bst4CI | ACNGT | 8 cut(s) | 13, 291, 456, 549, 584, 1156, 1237, 1690 |
| Bst6I | CTCTTC | 4 cut(s) | 501, 794, 1053, 1847 |
| BstAFI | CTTAAG | 1 cut(s) | 794 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1127 |
| BstBAI | YACGTR | 2 cut(s) | 1009, 1028 |
| BstC8I | GCNNGC | 5 cut(s) | 99, 201, 964, 968, 1119 |
| BstDEI | CTNAG | 9 cut(s) | 231, 502, 651, 734, 813, 1035, 1290, 1506, 1571 |
| BstDSI | CCRYGG | 1 cut(s) | 406 |
| BstEII | GGTNACC | 1 cut(s) | 1602 |
| BstF5I | GGATG | 3 cut(s) | 232, 1054, 1681 |
| BstFNI | CGCG | 2 cut(s) | 408, 1098 |
| BstH2I | RGCGCY | 1 cut(s) | 1479 |
| BstHHI | GCGC | 1 cut(s) | 1478 |
| BstKTI | GATC | 7 cut(s) | 157, 642, 700, 1072, 1189, 1297, 1840 |
| BstMAI | GTCTC | 1 cut(s) | 1270 |
| BstMBI | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 200, 266, 941, 1127 |
| BstNI | CCWGG | 4 cut(s) | 190, 271, 1350, 1764 |
| BstNSI | RCATGY | 1 cut(s) | 386 |
| BstPI | GGTNACC | 1 cut(s) | 1602 |
| BstSCI | CCNGG | 5 cut(s) | 188, 269, 1348, 1736, 1762 |
| BstUI | CGCG | 2 cut(s) | 408, 1098 |
| BstV1I | GCAGC | 1 cut(s) | 17 |
| BstX2I | RGATCY | 3 cut(s) | 154, 1186, 1837 |
| BstYI | RGATCY | 3 cut(s) | 154, 1186, 1837 |
| BstZ17I | GTATAC | 1 cut(s) | 1004 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1035 |
| BsuI | GTATCC | 2 cut(s) | 619, 1040 |
| BsuRI | GGCC | 5 cut(s) | 194, 411, 444, 1617, 1812 |
| BtgI | CCRYGG | 1 cut(s) | 406 |
| BtsCI | GGATG | 3 cut(s) | 232, 1054, 1681 |
| BtsIMutI | CAGTG | 1 cut(s) | 1514 |
| BtuMI | TCGCGA | 1 cut(s) | 1098 |
| Cac8I | GCNNGC | 5 cut(s) | 99, 201, 964, 968, 1119 |
| CciI | TCATGA | 1 cut(s) | 1774 |
| CfoI | GCGC | 1 cut(s) | 1478 |
| Cfr10I | RCCGGY | 1 cut(s) | 527 |
| Cfr13I | GGNCC | 3 cut(s) | 192, 403, 805 |
| Cfr42I | CCGCGG | 1 cut(s) | 409 |
| CpoI | CGGWCCG | 1 cut(s) | 403 |
| Csp6I | GTAC | 4 cut(s) | 365, 777, 939, 1010 |
| CspAI | ACCGGT | 1 cut(s) | 527 |
| CspI | CGGWCCG | 1 cut(s) | 403 |
| CviAII | CATG | 7 cut(s) | 383, 754, 882, 1127, 1434, 1513, 1775 |
| CviQI | GTAC | 4 cut(s) | 365, 777, 939, 1010 |
| DdeI | CTNAG | 9 cut(s) | 231, 502, 651, 734, 813, 1035, 1290, 1506, 1571 |
| DpnI | GATC | 7 cut(s) | 156, 641, 699, 1071, 1188, 1296, 1839 |
| DpnII | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| DraI | TTTAAA | 1 cut(s) | 924 |
| EaeI | YGGCCR | 2 cut(s) | 442, 1810 |
| Eam1104I | CTCTTC | 4 cut(s) | 501, 794, 1053, 1847 |
| EarI | CTCTTC | 4 cut(s) | 501, 794, 1053, 1847 |
| Eco32I | GATATC | 1 cut(s) | 1225 |
| Eco47I | GGWCC | 2 cut(s) | 403, 805 |
| Eco57I | CTGAAG | 4 cut(s) | 123, 339, 1403, 1593 |
| Eco81I | CCTNAGG | 1 cut(s) | 1035 |
| Eco88I | CYCGRG | 1 cut(s) | 1721 |
| Eco91I | GGTNACC | 1 cut(s) | 1602 |
| EcoO109I | RGGNCCY | 1 cut(s) | 192 |
| EcoO65I | GGTNACC | 1 cut(s) | 1602 |
| EcoRI | GAATTC | 3 cut(s) | 161, 1360, 1566 |
| EcoRII | CCWGG | 4 cut(s) | 188, 269, 1348, 1762 |
| EcoRV | GATATC | 1 cut(s) | 1225 |
| EcoT22I | ATGCAT | 1 cut(s) | 931 |
| FaeI | CATG | 7 cut(s) | 386, 757, 885, 1130, 1437, 1516, 1778 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1826, 1858 |
| FaqI | GGGAC | 6 cut(s) | 2, 128, 818, 875, 1597, 1780 |
| FatI | CATG | 7 cut(s) | 382, 753, 881, 1126, 1433, 1512, 1774 |
| FauI | CCCGC | 1 cut(s) | 212 |
| FauNDI | CATATG | 1 cut(s) | 1312 |
| FblI | GTMKAC | 2 cut(s) | 579, 1003 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 409 |
| FokI | GGATG | 3 cut(s) | 239, 1061, 1688 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 409 |
| FspBI | CTAG | 5 cut(s) | 21, 617, 774, 963, 1118 |
| GlaI | GCGC | 1 cut(s) | 1477 |
| GluI | GCNGC | 2 cut(s) | 6, 409 |
| GsuI | CTGGAG | 2 cut(s) | 325, 396 |
| HaeII | RGCGCY | 1 cut(s) | 1479 |
| HaeIII | GGCC | 5 cut(s) | 194, 411, 444, 1617, 1812 |
| HapII | CCGG | 2 cut(s) | 528, 1737 |
| HhaI | GCGC | 1 cut(s) | 1478 |
| Hin1II | CATG | 7 cut(s) | 386, 757, 885, 1130, 1437, 1516, 1778 |
| Hin6I | GCGC | 1 cut(s) | 1476 |
| HinP1I | GCGC | 1 cut(s) | 1476 |
| HincII | GTYRAC | 2 cut(s) | 325, 1459 |
| HindII | GTYRAC | 2 cut(s) | 325, 1459 |
| HindIII | AAGCTT | 3 cut(s) | 168, 791, 1301 |
| HinfI | GANTC | 9 cut(s) | 233, 326, 757, 914, 1087, 1204, 1316, 1423, 1502 |
| HpaI | GTTAAC | 1 cut(s) | 1459 |
| HpaII | CCGG | 2 cut(s) | 528, 1737 |
| HphI | GGTGA | 4 cut(s) | 94, 1201, 1225, 1596 |
| Hpy166II | GTNNAC | 5 cut(s) | 325, 552, 580, 1004, 1459 |
| Hpy8I | GTNNAC | 5 cut(s) | 325, 552, 580, 1004, 1459 |
| Hpy99I | CGWCG | 1 cut(s) | 259 |
| HpyAV | CCTTC | 7 cut(s) | 119, 711, 1094, 1378, 1534, 1617, 1828 |
| HpyCH4III | ACNGT | 8 cut(s) | 13, 291, 456, 549, 584, 1156, 1237, 1690 |
| HpyCH4IV | ACGT | 5 cut(s) | 117, 522, 1008, 1027, 1461 |
| HpyCH4V | TGCA | 8 cut(s) | 199, 386, 657, 929, 1130, 1443, 1512, 1631 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 200, 266, 941, 1127 |
| HpyF3I | CTNAG | 9 cut(s) | 231, 502, 651, 734, 813, 1035, 1290, 1506, 1571 |
| HpySE526I | ACGT | 5 cut(s) | 117, 522, 1008, 1027, 1461 |
| Hsp92II | CATG | 7 cut(s) | 386, 757, 885, 1130, 1437, 1516, 1778 |
| HspAI | GCGC | 1 cut(s) | 1476 |
| KspAI | GTTAAC | 1 cut(s) | 1459 |
| KspI | CCGCGG | 1 cut(s) | 409 |
| Kzo9I | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| LguI | GCTCTTC | 1 cut(s) | 501 |
| LmnI | GCTCC | 3 cut(s) | 344, 377, 1529 |
| Lsp1109I | GCAGC | 1 cut(s) | 17 |
| LweI | GCATC | 2 cut(s) | 217, 258 |
| MaeI | CTAG | 5 cut(s) | 21, 617, 774, 963, 1118 |
| MaeII | ACGT | 5 cut(s) | 117, 522, 1008, 1027, 1461 |
| MaeIII | GTNAC | 3 cut(s) | 523, 1462, 1602 |
| MalI | GATC | 7 cut(s) | 156, 641, 699, 1071, 1188, 1296, 1839 |
| MboI | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| MboII | GAAGA | 7 cut(s) | 116, 164, 488, 811, 1070, 1096, 1834 |
| MfeI | CAATTG | 1 cut(s) | 1402 |
| MflI | RGATCY | 3 cut(s) | 154, 1186, 1837 |
| MhlI | GDGCHC | 1 cut(s) | 382 |
| MlsI | TGGCCA | 2 cut(s) | 444, 1812 |
| MluNI | TGGCCA | 2 cut(s) | 444, 1812 |
| MlyI | GAGTC | 3 cut(s) | 242, 320, 751 |
| MmeI | TCCRAC | 2 cut(s) | 1143, 1462 |
| Mox20I | TGGCCA | 2 cut(s) | 444, 1812 |
| Mph1103I | ATGCAT | 1 cut(s) | 931 |
| MscI | TGGCCA | 2 cut(s) | 444, 1812 |
| MslI | CAYNNNNRTG | 2 cut(s) | 909, 1311 |
| Msp20I | TGGCCA | 2 cut(s) | 444, 1812 |
| MspA1I | CMGCKG | 2 cut(s) | 408, 944 |
| MspCI | CTTAAG | 1 cut(s) | 794 |
| MspI | CCGG | 2 cut(s) | 528, 1737 |
| MspR9I | CCNGG | 5 cut(s) | 190, 271, 1350, 1738, 1764 |
| MunI | CAATTG | 1 cut(s) | 1402 |
| MvaI | CCWGG | 4 cut(s) | 190, 271, 1350, 1764 |
| MvnI | CGCG | 2 cut(s) | 408, 1098 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 200, 266, 941, 1127 |
| NciI | CCSGG | 1 cut(s) | 1738 |
| NdeI | CATATG | 1 cut(s) | 1312 |
| NdeII | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| NheI | GCTAGC | 2 cut(s) | 962, 1117 |
| NlaIII | CATG | 7 cut(s) | 386, 757, 885, 1130, 1437, 1516, 1778 |
| NlaIV | GGNNCC | 3 cut(s) | 806, 1645, 1730 |
| NmeAIII | GCCGAG | 1 cut(s) | 1809 |
| NmuCI | GTSAC | 1 cut(s) | 1602 |
| NruI | TCGCGA | 1 cut(s) | 1098 |
| NsiI | ATGCAT | 1 cut(s) | 931 |
| NspI | RCATGY | 1 cut(s) | 386 |
| PaeR7I | CTCGAG | 1 cut(s) | 1721 |
| PagI | TCATGA | 1 cut(s) | 1774 |
| PciSI | GCTCTTC | 1 cut(s) | 501 |
| PfeI | GAWTC | 6 cut(s) | 914, 1087, 1204, 1316, 1423, 1502 |
| PflFI | GACNNNGTC | 1 cut(s) | 119 |
| PinAI | ACCGGT | 1 cut(s) | 527 |
| PkrI | GCNGC | 2 cut(s) | 7, 410 |
| PleI | GAGTC | 3 cut(s) | 241, 320, 751 |
| PpsI | GAGTC | 3 cut(s) | 241, 320, 751 |
| Ppu21I | YACGTR | 2 cut(s) | 1009, 1028 |
| PsiI | TTATAA | 1 cut(s) | 996 |
| Psp1406I | AACGTT | 1 cut(s) | 1461 |
| Psp6I | CCWGG | 4 cut(s) | 188, 269, 1348, 1762 |
| PspEI | GGTNACC | 1 cut(s) | 1602 |
| PspGI | CCWGG | 4 cut(s) | 188, 269, 1348, 1762 |
| PspN4I | GGNNCC | 3 cut(s) | 806, 1645, 1730 |
| PspPI | GGNCC | 3 cut(s) | 192, 403, 805 |
| PsuI | RGATCY | 3 cut(s) | 154, 1186, 1837 |
| PsyI | GACNNNGTC | 1 cut(s) | 119 |
| PvuII | CAGCTG | 1 cut(s) | 944 |
| RruI | TCGCGA | 1 cut(s) | 1098 |
| RsaI | GTAC | 4 cut(s) | 366, 778, 940, 1011 |
| RsaNI | GTAC | 4 cut(s) | 365, 777, 939, 1010 |
| RseI | CAYNNNNRTG | 2 cut(s) | 909, 1311 |
| Rsr2I | CGGWCCG | 1 cut(s) | 403 |
| RsrII | CGGWCCG | 1 cut(s) | 403 |
| SacII | CCGCGG | 1 cut(s) | 409 |
| SapI | GCTCTTC | 1 cut(s) | 501 |
| SatI | GCNGC | 2 cut(s) | 6, 409 |
| Sau3AI | GATC | 7 cut(s) | 154, 639, 697, 1069, 1186, 1294, 1837 |
| Sau96I | GGNCC | 3 cut(s) | 192, 403, 805 |
| ScaI | AGTACT | 1 cut(s) | 778 |
| SchI | GAGTC | 3 cut(s) | 242, 320, 751 |
| ScrFI | CCNGG | 5 cut(s) | 190, 271, 1350, 1738, 1764 |
| SduI | GDGCHC | 1 cut(s) | 382 |
| SfaNI | GCATC | 2 cut(s) | 217, 258 |
| Sfr274I | CTCGAG | 1 cut(s) | 1721 |
| Sfr303I | CCGCGG | 1 cut(s) | 409 |
| SgrBI | CCGCGG | 1 cut(s) | 409 |
| SinI | GGWCC | 2 cut(s) | 403, 805 |
| SlaI | CTCGAG | 1 cut(s) | 1721 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 909, 1311 |
| SmlI | CTYRAG | 3 cut(s) | 794, 897, 1721 |
| SmoI | CTYRAG | 3 cut(s) | 794, 897, 1721 |
| SsiI | CCGC | 4 cut(s) | 219, 401, 406, 408 |
| SspI | AATATT | 2 cut(s) | 277, 540 |
| SspMI | CTAG | 5 cut(s) | 21, 617, 774, 963, 1118 |
| StyD4I | CCNGG | 5 cut(s) | 188, 269, 1348, 1736, 1762 |
| TaaI | ACNGT | 8 cut(s) | 13, 291, 456, 549, 584, 1156, 1237, 1690 |
| TaiI | ACGT | 5 cut(s) | 120, 525, 1011, 1030, 1464 |
| TaqI | TCGA | 5 cut(s) | 123, 329, 642, 696, 1722 |
| TaqII | GACCGA | 1 cut(s) | 822 |
| TatI | WGTACW | 2 cut(s) | 364, 776 |
| TauI | GCSGC | 1 cut(s) | 411 |
| TfiI | GAWTC | 6 cut(s) | 914, 1087, 1204, 1316, 1423, 1502 |
| TscAI | CASTG | 1 cut(s) | 1514 |
| TseFI | GTSAC | 1 cut(s) | 1602 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 1 cut(s) | 1602 |
| TspDTI | ATGAA | 5 cut(s) | 375, 677, 927, 1329, 1341 |
| TspRI | CASTG | 1 cut(s) | 1514 |
| Tth111I | GACNNNGTC | 1 cut(s) | 119 |
| Vha464I | CTTAAG | 1 cut(s) | 794 |
| VpaK11BI | GGWCC | 2 cut(s) | 403, 805 |
| XceI | RCATGY | 1 cut(s) | 386 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1654 |
| XhoI | CTCGAG | 1 cut(s) | 1721 |
| XmiI | GTMKAC | 2 cut(s) | 579, 1003 |
| XspI | CTAG | 5 cut(s) | 21, 617, 774, 963, 1118 |
| ZrmI | AGTACT | 1 cut(s) | 778 |
| Zsp2I | ATGCAT | 1 cut(s) | 931 |