protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 192 - 303 | 1.2e-24 | Domain of unknown function |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 288 |
| AciI | CCGC | 2 cut(s) | 419, 1042 |
| AclWI | GGATC | 1 cut(s) | 492 |
| AcsI | RAATTY | 3 cut(s) | 63, 131, 689 |
| AcuI | CTGAAG | 1 cut(s) | 744 |
| AfaI | GTAC | 1 cut(s) | 601 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 214 |
| AgsI | TTSAA | 6 cut(s) | 62, 254, 307, 454, 491, 697 |
| AjiI | CACGTC | 1 cut(s) | 789 |
| AluBI | AGCT | 2 cut(s) | 494, 590 |
| AluI | AGCT | 2 cut(s) | 494, 590 |
| Alw21I | GWGCWC | 1 cut(s) | 616 |
| AlwI | GGATC | 1 cut(s) | 492 |
| AoxI | GGCC | 3 cut(s) | 238, 705, 897 |
| ApeKI | GCWGC | 6 cut(s) | 54, 158, 494, 638, 641, 872 |
| ApoI | RAATTY | 3 cut(s) | 63, 131, 689 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 810 |
| AspA2I | CCTAGG | 1 cut(s) | 10 |
| AspS9I | GGNCC | 2 cut(s) | 705, 898 |
| AsuC2I | CCSGG | 1 cut(s) | 657 |
| AsuHPI | GGTGA | 1 cut(s) | 378 |
| AsuNHI | GCTAGC | 1 cut(s) | 473 |
| AvrII | CCTAGG | 1 cut(s) | 10 |
| BauI | CACGAG | 1 cut(s) | 1001 |
| BbsI | GAAGAC | 2 cut(s) | 678, 839 |
| Bbv12I | GWGCWC | 1 cut(s) | 616 |
| BbvI | GCAGC | 6 cut(s) | 66, 170, 481, 625, 653, 859 |
| BccI | CCATC | 2 cut(s) | 325, 671 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 32, 66, 491, 525 |
| BciVI | GTATCC | 1 cut(s) | 9 |
| BclI | TGATCA | 1 cut(s) | 555 |
| BcnI | CCSGG | 1 cut(s) | 657 |
| BfaI | CTAG | 4 cut(s) | 11, 68, 474, 776 |
| BfmI | CTRYAG | 1 cut(s) | 639 |
| BfuI | GTATCC | 1 cut(s) | 9 |
| BisI | GCNGC | 7 cut(s) | 55, 159, 420, 495, 639, 642, 873 |
| BlnI | CCTAGG | 1 cut(s) | 10 |
| BlsI | GCNGC | 7 cut(s) | 56, 160, 421, 496, 640, 643, 874 |
| Bme1390I | CCNGG | 1 cut(s) | 657 |
| BmgBI | CACGTC | 1 cut(s) | 789 |
| BmgT120I | GGNCC | 2 cut(s) | 705, 898 |
| BmrFI | CCNGG | 1 cut(s) | 657 |
| BmsI | GCATC | 3 cut(s) | 420, 975, 1081 |
| BmtI | GCTAGC | 1 cut(s) | 477 |
| BpiI | GAAGAC | 2 cut(s) | 678, 839 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 518, 550 |
| BpuMI | CCSGG | 1 cut(s) | 657 |
| BsaAI | YACGTR | 1 cut(s) | 413 |
| BsaJI | CCNNGG | 4 cut(s) | 10, 867, 894, 1069 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 214 |
| Bse1I | ACTGG | 1 cut(s) | 961 |
| BseDI | CCNNGG | 4 cut(s) | 10, 867, 894, 1069 |
| BseGI | GGATG | 1 cut(s) | 990 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 214 |
| BseNI | ACTGG | 1 cut(s) | 961 |
| BseXI | GCAGC | 6 cut(s) | 66, 170, 481, 625, 653, 859 |
| BshFI | GGCC | 3 cut(s) | 240, 707, 899 |
| BsiHKAI | GWGCWC | 1 cut(s) | 616 |
| BsiSI | CCGG | 1 cut(s) | 657 |
| BslFI | GGGAC | 1 cut(s) | 390 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 214 |
| BsmFI | GGGAC | 1 cut(s) | 390 |
| BsmI | GAATGC | 1 cut(s) | 644 |
| BsnI | GGCC | 3 cut(s) | 240, 707, 899 |
| Bsp1286I | GDGCHC | 1 cut(s) | 616 |
| Bsp1407I | TGTACA | 1 cut(s) | 599 |
| Bsp143I | GATC | 3 cut(s) | 484, 555, 882 |
| BspACI | CCGC | 2 cut(s) | 419, 1042 |
| BspANI | GGCC | 3 cut(s) | 240, 707, 899 |
| BspMAI | CTGCAG | 1 cut(s) | 643 |
| BspOI | GCTAGC | 1 cut(s) | 477 |
| BspPI | GGATC | 1 cut(s) | 492 |
| BsrGI | TGTACA | 1 cut(s) | 599 |
| BsrI | ACTGG | 1 cut(s) | 961 |
| BssECI | CCNNGG | 4 cut(s) | 10, 867, 894, 1069 |
| BssMI | GATC | 3 cut(s) | 484, 555, 882 |
| BssSI | CACGAG | 1 cut(s) | 1001 |
| BssT1I | CCWWGG | 2 cut(s) | 10, 1069 |
| Bst2BI | CACGAG | 1 cut(s) | 1001 |
| Bst4CI | ACNGT | 2 cut(s) | 604, 652 |
| Bst6I | CTCTTC | 1 cut(s) | 1069 |
| BstAUI | TGTACA | 1 cut(s) | 599 |
| BstBAI | YACGTR | 1 cut(s) | 413 |
| BstC8I | GCNNGC | 2 cut(s) | 475, 510 |
| BstDEI | CTNAG | 1 cut(s) | 537 |
| BstDSI | CCRYGG | 1 cut(s) | 867 |
| BstF5I | GGATG | 1 cut(s) | 990 |
| BstKTI | GATC | 3 cut(s) | 487, 558, 885 |
| BstMBI | GATC | 3 cut(s) | 484, 555, 882 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 474 |
| BstNSI | RCATGY | 3 cut(s) | 79, 512, 612 |
| BstSCI | CCNGG | 1 cut(s) | 655 |
| BstSFI | CTRYAG | 1 cut(s) | 639 |
| BstV1I | GCAGC | 6 cut(s) | 66, 170, 481, 625, 653, 859 |
| BstV2I | GAAGAC | 2 cut(s) | 678, 839 |
| BstX2I | RGATCY | 1 cut(s) | 484 |
| BstYI | RGATCY | 1 cut(s) | 484 |
| BsuI | GTATCC | 1 cut(s) | 9 |
| BsuRI | GGCC | 3 cut(s) | 240, 707, 899 |
| BtgI | CCRYGG | 1 cut(s) | 867 |
| BtrI | CACGTC | 1 cut(s) | 789 |
| BtsCI | GGATG | 1 cut(s) | 990 |
| BtsIMutI | CAGTG | 1 cut(s) | 954 |
| Cac8I | GCNNGC | 2 cut(s) | 475, 510 |
| Cfr13I | GGNCC | 2 cut(s) | 705, 898 |
| CseI | GACGC | 1 cut(s) | 740 |
| Csp6I | GTAC | 1 cut(s) | 600 |
| CviQI | GTAC | 1 cut(s) | 600 |
| DdeI | CTNAG | 1 cut(s) | 537 |
| DpnI | GATC | 3 cut(s) | 486, 557, 884 |
| DpnII | GATC | 3 cut(s) | 484, 555, 882 |
| Eam1104I | CTCTTC | 1 cut(s) | 1069 |
| EarI | CTCTTC | 1 cut(s) | 1069 |
| Eco130I | CCWWGG | 2 cut(s) | 10, 1069 |
| Eco57I | CTGAAG | 1 cut(s) | 744 |
| EcoO109I | RGGNCCY | 1 cut(s) | 705 |
| EcoRI | GAATTC | 1 cut(s) | 131 |
| EcoT14I | CCWWGG | 2 cut(s) | 10, 1069 |
| ErhI | CCWWGG | 2 cut(s) | 10, 1069 |
| FaqI | GGGAC | 1 cut(s) | 390 |
| FauNDI | CATATG | 1 cut(s) | 369 |
| FbaI | TGATCA | 1 cut(s) | 555 |
| Fnu4HI | GCNGC | 7 cut(s) | 55, 159, 420, 495, 639, 642, 873 |
| FokI | GGATG | 1 cut(s) | 997 |
| Fsp4HI | GCNGC | 7 cut(s) | 55, 159, 420, 495, 639, 642, 873 |
| FspBI | CTAG | 4 cut(s) | 11, 68, 474, 776 |
| GluI | GCNGC | 7 cut(s) | 55, 159, 420, 495, 639, 642, 873 |
| HaeIII | GGCC | 3 cut(s) | 240, 707, 899 |
| HapII | CCGG | 1 cut(s) | 657 |
| HgaI | GACGC | 1 cut(s) | 740 |
| HinfI | GANTC | 1 cut(s) | 923 |
| HpaII | CCGG | 1 cut(s) | 657 |
| HphI | GGTGA | 1 cut(s) | 378 |
| Hpy166II | GTNNAC | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 2 cut(s) | 330, 852 |
| Hpy188III | TCNNGA | 2 cut(s) | 488, 694 |
| Hpy8I | GTNNAC | 1 cut(s) | 205 |
| HpyCH4III | ACNGT | 2 cut(s) | 604, 652 |
| HpyCH4IV | ACGT | 4 cut(s) | 412, 572, 788, 793 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 474 |
| HpyF3I | CTNAG | 1 cut(s) | 537 |
| HpySE526I | ACGT | 4 cut(s) | 412, 572, 788, 793 |
| Ksp22I | TGATCA | 1 cut(s) | 555 |
| Kzo9I | GATC | 3 cut(s) | 484, 555, 882 |
| LpnPI | CCDG | 6 cut(s) | 222, 331, 492, 670, 914, 942 |
| Lsp1109I | GCAGC | 6 cut(s) | 66, 170, 481, 625, 653, 859 |
| LweI | GCATC | 3 cut(s) | 420, 975, 1081 |
| MaeI | CTAG | 4 cut(s) | 11, 68, 474, 776 |
| MaeII | ACGT | 4 cut(s) | 412, 572, 788, 793 |
| MaeIII | GTNAC | 3 cut(s) | 113, 622, 789 |
| MalI | GATC | 3 cut(s) | 486, 557, 884 |
| MboI | GATC | 3 cut(s) | 484, 555, 882 |
| MboII | GAAGA | 7 cut(s) | 142, 560, 683, 815, 818, 839, 1086 |
| MfeI | CAATTG | 1 cut(s) | 966 |
| MflI | RGATCY | 1 cut(s) | 484 |
| MhlI | GDGCHC | 1 cut(s) | 616 |
| MluCI | AATT | 9 cut(s) | 38, 63, 109, 131, 551, 689, 966, 989, 1061 |
| MlyI | GAGTC | 1 cut(s) | 917 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| MnlI | CCTC | 7 cut(s) | 161, 475, 556, 604, 837, 904, 982 |
| MroXI | GAANNNNTTC | 1 cut(s) | 810 |
| MseI | TTAA | 1 cut(s) | 1064 |
| MslI | CAYNNNNRTG | 1 cut(s) | 979 |
| MspI | CCGG | 1 cut(s) | 657 |
| MspR9I | CCNGG | 1 cut(s) | 657 |
| MunI | CAATTG | 1 cut(s) | 966 |
| Mva1269I | GAATGC | 1 cut(s) | 644 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 474 |
| NciI | CCSGG | 1 cut(s) | 657 |
| NdeI | CATATG | 1 cut(s) | 369 |
| NdeII | GATC | 3 cut(s) | 484, 555, 882 |
| NheI | GCTAGC | 1 cut(s) | 473 |
| NmeAIII | GCCGAG | 1 cut(s) | 875 |
| NmuCI | GTSAC | 2 cut(s) | 113, 789 |
| NspI | RCATGY | 3 cut(s) | 79, 512, 612 |
| PaeI | GCATGC | 1 cut(s) | 512 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 28 |
| PctI | GAATGC | 1 cut(s) | 644 |
| PdmI | GAANNNNTTC | 1 cut(s) | 810 |
| PkrI | GCNGC | 7 cut(s) | 56, 160, 421, 496, 640, 643, 874 |
| PleI | GAGTC | 1 cut(s) | 917 |
| PpsI | GAGTC | 1 cut(s) | 917 |
| Ppu21I | YACGTR | 1 cut(s) | 413 |
| PsiI | TTATAA | 1 cut(s) | 288 |
| PspPI | GGNCC | 2 cut(s) | 705, 898 |
| PstI | CTGCAG | 1 cut(s) | 643 |
| PsuI | RGATCY | 1 cut(s) | 484 |
| RsaI | GTAC | 1 cut(s) | 601 |
| RsaNI | GTAC | 1 cut(s) | 600 |
| RseI | CAYNNNNRTG | 1 cut(s) | 979 |
| SaqAI | TTAA | 1 cut(s) | 1064 |
| SatI | GCNGC | 7 cut(s) | 55, 159, 420, 495, 639, 642, 873 |
| Sau3AI | GATC | 3 cut(s) | 484, 555, 882 |
| Sau96I | GGNCC | 2 cut(s) | 705, 898 |
| SchI | GAGTC | 1 cut(s) | 917 |
| ScrFI | CCNGG | 1 cut(s) | 657 |
| SduI | GDGCHC | 1 cut(s) | 616 |
| SfaNI | GCATC | 3 cut(s) | 420, 975, 1081 |
| SfcI | CTRYAG | 1 cut(s) | 639 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 979 |
| SphI | GCATGC | 1 cut(s) | 512 |
| Sse9I | AATT | 9 cut(s) | 38, 63, 109, 131, 551, 689, 966, 989, 1061 |
| SsiI | CCGC | 2 cut(s) | 419, 1042 |
| SspMI | CTAG | 4 cut(s) | 11, 68, 474, 776 |
| StyD4I | CCNGG | 1 cut(s) | 655 |
| StyI | CCWWGG | 2 cut(s) | 10, 1069 |
| TaaI | ACNGT | 2 cut(s) | 604, 652 |
| TaiI | ACGT | 4 cut(s) | 415, 575, 791, 796 |
| TaqI | TCGA | 2 cut(s) | 31, 829 |
| TasI | AATT | 9 cut(s) | 38, 63, 109, 131, 551, 689, 966, 989, 1061 |
| TatI | WGTACW | 1 cut(s) | 599 |
| TauI | GCSGC | 1 cut(s) | 422 |
| Tru1I | TTAA | 1 cut(s) | 1064 |
| Tru9I | TTAA | 1 cut(s) | 1064 |
| TscAI | CASTG | 1 cut(s) | 961 |
| TseFI | GTSAC | 2 cut(s) | 113, 789 |
| TseI | GCWGC | 6 cut(s) | 54, 158, 494, 638, 641, 872 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 789 |
| TspDTI | ATGAA | 7 cut(s) | 50, 119, 246, 530, 561, 593, 684 |
| TspGWI | ACGGA | 1 cut(s) | 856 |
| TspRI | CASTG | 1 cut(s) | 961 |
| XapI | RAATTY | 3 cut(s) | 63, 131, 689 |
| XceI | RCATGY | 3 cut(s) | 79, 512, 612 |
| XmaJI | CCTAGG | 1 cut(s) | 10 |
| XmnI | GAANNNNTTC | 1 cut(s) | 810 |
| XspI | CTAG | 4 cut(s) | 11, 68, 474, 776 |