protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 422 |
| AciI | CCGC | 1 cut(s) | 103 |
| AclWI | GGATC | 2 cut(s) | 277, 290 |
| AcoI | YGGCCR | 1 cut(s) | 432 |
| AcsI | RAATTY | 2 cut(s) | 342, 394 |
| AcvI | CACGTG | 1 cut(s) | 140 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AflIII | ACRYGT | 2 cut(s) | 156, 427 |
| AgsI | TTSAA | 3 cut(s) | 134, 214, 326 |
| AleI | CACNNNNGTG | 1 cut(s) | 159 |
| AluBI | AGCT | 2 cut(s) | 218, 460 |
| AluI | AGCT | 2 cut(s) | 218, 460 |
| AlwI | GGATC | 2 cut(s) | 277, 290 |
| AoxI | GGCC | 3 cut(s) | 18, 123, 432 |
| ApeKI | GCWGC | 1 cut(s) | 479 |
| ApoI | RAATTY | 2 cut(s) | 342, 394 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 379, 411 |
| AseI | ATTAAT | 1 cut(s) | 36 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 526 |
| AspLEI | GCGC | 3 cut(s) | 422, 424, 544 |
| AspS9I | GGNCC | 3 cut(s) | 19, 124, 304 |
| AsuC2I | CCSGG | 1 cut(s) | 436 |
| AsuHPI | GGTGA | 1 cut(s) | 92 |
| AvaII | GGWCC | 1 cut(s) | 304 |
| BamHI | GGATCC | 1 cut(s) | 282 |
| BbrPI | CACGTG | 1 cut(s) | 140 |
| BbvI | GCAGC | 1 cut(s) | 491 |
| BcnI | CCSGG | 1 cut(s) | 436 |
| BfmI | CTRYAG | 2 cut(s) | 63, 549 |
| BglII | AGATCT | 1 cut(s) | 271 |
| BisI | GCNGC | 1 cut(s) | 480 |
| BlsI | GCNGC | 1 cut(s) | 481 |
| Bme1390I | CCNGG | 1 cut(s) | 436 |
| Bme18I | GGWCC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 3 cut(s) | 19, 124, 304 |
| BmiI | GGNNCC | 3 cut(s) | 284, 305, 306 |
| BmrFI | CCNGG | 1 cut(s) | 436 |
| BmsI | GCATC | 1 cut(s) | 429 |
| BpuMI | CCSGG | 1 cut(s) | 436 |
| BsaAI | YACGTR | 1 cut(s) | 140 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 129, 159 |
| Bse1I | ACTGG | 2 cut(s) | 87, 394 |
| Bse3DI | GCAATG | 2 cut(s) | 181, 512 |
| BseGI | GGATG | 3 cut(s) | 175, 237, 444 |
| BseMI | GCAATG | 2 cut(s) | 181, 512 |
| BseMII | CTCAG | 2 cut(s) | 486, 551 |
| BseNI | ACTGG | 2 cut(s) | 87, 394 |
| BsePI | GCGCGC | 1 cut(s) | 420 |
| BseXI | GCAGC | 1 cut(s) | 491 |
| BsgI | GTGCAG | 1 cut(s) | 498 |
| Bsh1236I | CGCG | 1 cut(s) | 422 |
| BshFI | GGCC | 3 cut(s) | 20, 125, 434 |
| BsiSI | CCGG | 1 cut(s) | 435 |
| BslFI | GGGAC | 1 cut(s) | 290 |
| BsmFI | GGGAC | 1 cut(s) | 290 |
| BsnI | GGCC | 3 cut(s) | 20, 125, 434 |
| Bsp143I | GATC | 2 cut(s) | 271, 282 |
| BspACI | CCGC | 1 cut(s) | 103 |
| BspANI | GGCC | 3 cut(s) | 20, 125, 434 |
| BspCNI | CTCAG | 2 cut(s) | 485, 550 |
| BspFNI | CGCG | 1 cut(s) | 422 |
| BspLI | GGNNCC | 3 cut(s) | 284, 305, 306 |
| BspPI | GGATC | 2 cut(s) | 277, 290 |
| BsrDI | GCAATG | 2 cut(s) | 181, 512 |
| BsrI | ACTGG | 2 cut(s) | 87, 394 |
| BssHII | GCGCGC | 1 cut(s) | 420 |
| BssMI | GATC | 2 cut(s) | 271, 282 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| BstBAI | YACGTR | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 2 cut(s) | 261, 422 |
| BstDEI | CTNAG | 3 cut(s) | 23, 472, 537 |
| BstF5I | GGATG | 3 cut(s) | 175, 237, 444 |
| BstFNI | CGCG | 1 cut(s) | 422 |
| BstHHI | GCGC | 3 cut(s) | 422, 424, 544 |
| BstKTI | GATC | 2 cut(s) | 274, 285 |
| BstMBI | GATC | 2 cut(s) | 271, 282 |
| BstNSI | RCATGY | 2 cut(s) | 160, 431 |
| BstSCI | CCNGG | 1 cut(s) | 434 |
| BstSFI | CTRYAG | 2 cut(s) | 63, 549 |
| BstUI | CGCG | 1 cut(s) | 422 |
| BstV1I | GCAGC | 1 cut(s) | 491 |
| BstX2I | RGATCY | 2 cut(s) | 271, 282 |
| BstYI | RGATCY | 2 cut(s) | 271, 282 |
| BsuRI | GGCC | 3 cut(s) | 20, 125, 434 |
| BtsCI | GGATG | 3 cut(s) | 175, 237, 444 |
| BtsIMutI | CAGTG | 2 cut(s) | 94, 256 |
| Cac8I | GCNNGC | 2 cut(s) | 261, 422 |
| CfoI | GCGC | 3 cut(s) | 422, 424, 544 |
| Cfr13I | GGNCC | 3 cut(s) | 19, 124, 304 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CviAII | CATG | 4 cut(s) | 157, 188, 277, 428 |
| CviJI | RGCY | 7 cut(s) | 20, 125, 218, 351, 434, 460, 482 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 125, 218, 351, 434, 460, 482 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DdeI | CTNAG | 3 cut(s) | 23, 472, 537 |
| DpnI | GATC | 2 cut(s) | 273, 284 |
| DpnII | GATC | 2 cut(s) | 271, 282 |
| EaeI | YGGCCR | 1 cut(s) | 432 |
| Eco47I | GGWCC | 1 cut(s) | 304 |
| Eco72I | CACGTG | 1 cut(s) | 140 |
| EcoO109I | RGGNCCY | 2 cut(s) | 19, 304 |
| FaeI | CATG | 4 cut(s) | 160, 191, 280, 431 |
| FaqI | GGGAC | 1 cut(s) | 290 |
| FatI | CATG | 4 cut(s) | 156, 187, 276, 427 |
| Fnu4HI | GCNGC | 1 cut(s) | 480 |
| FokI | GGATG | 3 cut(s) | 162, 244, 451 |
| Fsp4HI | GCNGC | 1 cut(s) | 480 |
| GlaI | GCGC | 3 cut(s) | 421, 423, 543 |
| GluI | GCNGC | 1 cut(s) | 480 |
| HaeIII | GGCC | 3 cut(s) | 20, 125, 434 |
| HapII | CCGG | 1 cut(s) | 435 |
| HhaI | GCGC | 3 cut(s) | 422, 424, 544 |
| Hin1II | CATG | 4 cut(s) | 160, 191, 280, 431 |
| Hin6I | GCGC | 3 cut(s) | 420, 422, 542 |
| HinP1I | GCGC | 3 cut(s) | 420, 422, 542 |
| HinfI | GANTC | 3 cut(s) | 83, 96, 363 |
| HpaII | CCGG | 1 cut(s) | 435 |
| HphI | GGTGA | 1 cut(s) | 92 |
| Hpy166II | GTNNAC | 2 cut(s) | 143, 243 |
| Hpy188I | TCNGA | 2 cut(s) | 412, 521 |
| Hpy8I | GTNNAC | 2 cut(s) | 143, 243 |
| HpyAV | CCTTC | 1 cut(s) | 294 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4IV | ACGT | 1 cut(s) | 139 |
| HpyCH4V | TGCA | 6 cut(s) | 259, 320, 479, 487, 493, 505 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 472, 537 |
| HpySE526I | ACGT | 1 cut(s) | 139 |
| Hsp92II | CATG | 4 cut(s) | 160, 191, 280, 431 |
| HspAI | GCGC | 3 cut(s) | 420, 422, 542 |
| KflI | GGGWCCC | 1 cut(s) | 304 |
| Kzo9I | GATC | 2 cut(s) | 271, 282 |
| LpnPI | CCDG | 8 cut(s) | 100, 107, 216, 282, 375, 448, 459, 524 |
| Lsp1109I | GCAGC | 1 cut(s) | 491 |
| LweI | GCATC | 1 cut(s) | 429 |
| MaeII | ACGT | 1 cut(s) | 139 |
| MalI | GATC | 2 cut(s) | 273, 284 |
| MboI | GATC | 2 cut(s) | 271, 282 |
| MfeI | CAATTG | 2 cut(s) | 321, 415 |
| MflI | RGATCY | 2 cut(s) | 271, 282 |
| MluCI | AATT | 6 cut(s) | 207, 321, 342, 394, 415, 555 |
| MlyI | GAGTC | 1 cut(s) | 357 |
| MnlI | CCTC | 3 cut(s) | 10, 61, 221 |
| MroXI | GAANNNNTTC | 1 cut(s) | 526 |
| MseI | TTAA | 4 cut(s) | 6, 36, 72, 513 |
| MslI | CAYNNNNRTG | 3 cut(s) | 159, 186, 192 |
| MspI | CCGG | 1 cut(s) | 435 |
| MspR9I | CCNGG | 1 cut(s) | 436 |
| MunI | CAATTG | 2 cut(s) | 321, 415 |
| MvnI | CGCG | 1 cut(s) | 422 |
| NciI | CCSGG | 1 cut(s) | 436 |
| NdeII | GATC | 2 cut(s) | 271, 282 |
| NlaIII | CATG | 4 cut(s) | 160, 191, 280, 431 |
| NlaIV | GGNNCC | 3 cut(s) | 284, 305, 306 |
| NspI | RCATGY | 2 cut(s) | 160, 431 |
| OliI | CACNNNNGTG | 1 cut(s) | 159 |
| PauI | GCGCGC | 1 cut(s) | 420 |
| PciI | ACATGT | 2 cut(s) | 156, 427 |
| PdmI | GAANNNNTTC | 1 cut(s) | 526 |
| PfeI | GAWTC | 2 cut(s) | 83, 96 |
| PkrI | GCNGC | 1 cut(s) | 481 |
| PleI | GAGTC | 1 cut(s) | 357 |
| PmaCI | CACGTG | 1 cut(s) | 140 |
| PmlI | CACGTG | 1 cut(s) | 140 |
| PpsI | GAGTC | 1 cut(s) | 357 |
| Ppu21I | YACGTR | 1 cut(s) | 140 |
| PpuMI | RGGWCCY | 1 cut(s) | 304 |
| PscI | ACATGT | 2 cut(s) | 156, 427 |
| PshBI | ATTAAT | 1 cut(s) | 36 |
| Psp5II | RGGWCCY | 1 cut(s) | 304 |
| PspCI | CACGTG | 1 cut(s) | 140 |
| PspN4I | GGNNCC | 3 cut(s) | 284, 305, 306 |
| PspPI | GGNCC | 3 cut(s) | 19, 124, 304 |
| PspPPI | RGGWCCY | 1 cut(s) | 304 |
| PsuI | RGATCY | 2 cut(s) | 271, 282 |
| PteI | GCGCGC | 1 cut(s) | 420 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| RseI | CAYNNNNRTG | 3 cut(s) | 159, 186, 192 |
| SaqAI | TTAA | 4 cut(s) | 6, 36, 72, 513 |
| SatI | GCNGC | 1 cut(s) | 480 |
| Sau3AI | GATC | 2 cut(s) | 271, 282 |
| Sau96I | GGNCC | 3 cut(s) | 19, 124, 304 |
| SchI | GAGTC | 1 cut(s) | 357 |
| ScrFI | CCNGG | 1 cut(s) | 436 |
| SetI | ASST | 6 cut(s) | 72, 142, 220, 462, 478, 519 |
| SfaNI | GCATC | 1 cut(s) | 429 |
| SfcI | CTRYAG | 2 cut(s) | 63, 549 |
| SinI | GGWCC | 1 cut(s) | 304 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 159, 186, 192 |
| Sse9I | AATT | 6 cut(s) | 207, 321, 342, 394, 415, 555 |
| SsiI | CCGC | 1 cut(s) | 103 |
| StyD4I | CCNGG | 1 cut(s) | 434 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaiI | ACGT | 1 cut(s) | 142 |
| TaqI | TCGA | 1 cut(s) | 237 |
| TasI | AATT | 6 cut(s) | 207, 321, 342, 394, 415, 555 |
| TatI | WGTACW | 1 cut(s) | 196 |
| TfiI | GAWTC | 2 cut(s) | 83, 96 |
| Tru1I | TTAA | 4 cut(s) | 6, 36, 72, 513 |
| Tru9I | TTAA | 4 cut(s) | 6, 36, 72, 513 |
| TscAI | CASTG | 2 cut(s) | 94, 256 |
| TseI | GCWGC | 1 cut(s) | 479 |
| TspDTI | ATGAA | 1 cut(s) | 131 |
| TspRI | CASTG | 2 cut(s) | 94, 256 |
| VpaK11BI | GGWCC | 1 cut(s) | 304 |
| VspI | ATTAAT | 1 cut(s) | 36 |
| XapI | RAATTY | 2 cut(s) | 342, 394 |
| XceI | RCATGY | 2 cut(s) | 160, 431 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 276 |
| XmnI | GAANNNNTTC | 1 cut(s) | 526 |