protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 774 |
| AclWI | GGATC | 2 cut(s) | 121, 134 |
| AcsI | RAATTY | 1 cut(s) | 186 |
| AcuI | CTGAAG | 1 cut(s) | 645 |
| AcyI | GRCGYC | 1 cut(s) | 419 |
| AfaI | GTAC | 3 cut(s) | 42, 502, 914 |
| AgsI | TTSAA | 1 cut(s) | 170 |
| AluBI | AGCT | 4 cut(s) | 62, 304, 326, 430 |
| AluI | AGCT | 4 cut(s) | 62, 304, 326, 430 |
| Alw21I | GWGCWC | 1 cut(s) | 517 |
| Alw26I | GTCTC | 1 cut(s) | 362 |
| AlwI | GGATC | 2 cut(s) | 121, 134 |
| ApeKI | GCWGC | 3 cut(s) | 323, 539, 542 |
| ApoI | RAATTY | 1 cut(s) | 186 |
| AspS9I | GGNCC | 2 cut(s) | 148, 814 |
| AsuC2I | CCSGG | 3 cut(s) | 280, 385, 558 |
| AsuHPI | GGTGA | 2 cut(s) | 469, 862 |
| AvaII | GGWCC | 2 cut(s) | 148, 814 |
| BamHI | GGATCC | 1 cut(s) | 126 |
| BauI | CACGAG | 1 cut(s) | 119 |
| Bbv12I | GWGCWC | 1 cut(s) | 517 |
| BbvI | GCAGC | 3 cut(s) | 335, 526, 554 |
| BccI | CCATC | 3 cut(s) | 468, 536, 775 |
| BcnI | CCSGG | 3 cut(s) | 280, 385, 558 |
| BcoDI | GTCTC | 1 cut(s) | 362 |
| BfaI | CTAG | 2 cut(s) | 858, 902 |
| BfmI | CTRYAG | 1 cut(s) | 540 |
| BglII | AGATCT | 1 cut(s) | 115 |
| BisI | GCNGC | 4 cut(s) | 324, 540, 543, 774 |
| BlsI | GCNGC | 4 cut(s) | 325, 541, 544, 775 |
| Bme1390I | CCNGG | 3 cut(s) | 280, 385, 558 |
| Bme18I | GGWCC | 2 cut(s) | 148, 814 |
| BmgT120I | GGNCC | 2 cut(s) | 148, 814 |
| BmiI | GGNNCC | 3 cut(s) | 128, 149, 150 |
| BmrFI | CCNGG | 3 cut(s) | 280, 385, 558 |
| BmsI | GCATC | 4 cut(s) | 273, 500, 622, 876 |
| BpuMI | CCSGG | 3 cut(s) | 280, 385, 558 |
| BsaAI | YACGTR | 3 cut(s) | 26, 44, 425 |
| BsaHI | GRCGYC | 1 cut(s) | 419 |
| BsaJI | CCNNGG | 1 cut(s) | 383 |
| Bse3DI | GCAATG | 1 cut(s) | 356 |
| BseDI | CCNNGG | 1 cut(s) | 383 |
| BseGI | GGATG | 4 cut(s) | 81, 288, 483, 891 |
| BseMI | GCAATG | 1 cut(s) | 356 |
| BseMII | CTCAG | 1 cut(s) | 330 |
| BseRI | GAGGAG | 1 cut(s) | 945 |
| BseXI | GCAGC | 3 cut(s) | 335, 526, 554 |
| BsgI | GTGCAG | 1 cut(s) | 342 |
| BsiHKAI | GWGCWC | 1 cut(s) | 517 |
| BsiSI | CCGG | 3 cut(s) | 279, 385, 558 |
| BslFI | GGGAC | 1 cut(s) | 161 |
| BsmAI | GTCTC | 1 cut(s) | 362 |
| BsmFI | GGGAC | 1 cut(s) | 161 |
| BsmI | GAATGC | 1 cut(s) | 545 |
| Bsp1286I | GDGCHC | 1 cut(s) | 517 |
| Bsp1407I | TGTACA | 2 cut(s) | 500, 912 |
| Bsp143I | GATC | 2 cut(s) | 115, 126 |
| BspACI | CCGC | 1 cut(s) | 774 |
| BspCNI | CTCAG | 1 cut(s) | 329 |
| BspLI | GGNNCC | 3 cut(s) | 128, 149, 150 |
| BspMAI | CTGCAG | 1 cut(s) | 544 |
| BspPI | GGATC | 2 cut(s) | 121, 134 |
| BsrDI | GCAATG | 1 cut(s) | 356 |
| BsrGI | TGTACA | 2 cut(s) | 500, 912 |
| BssECI | CCNNGG | 1 cut(s) | 383 |
| BssMI | GATC | 2 cut(s) | 115, 126 |
| BssNI | GRCGYC | 1 cut(s) | 419 |
| BssSI | CACGAG | 1 cut(s) | 119 |
| Bst2BI | CACGAG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 4 cut(s) | 95, 413, 505, 825 |
| Bst6I | CTCTTC | 1 cut(s) | 903 |
| BstACI | GRCGYC | 1 cut(s) | 419 |
| BstAUI | TGTACA | 2 cut(s) | 500, 912 |
| BstBAI | YACGTR | 3 cut(s) | 26, 44, 425 |
| BstC8I | GCNNGC | 2 cut(s) | 105, 266 |
| BstDEI | CTNAG | 2 cut(s) | 316, 438 |
| BstF5I | GGATG | 4 cut(s) | 81, 288, 483, 891 |
| BstKTI | GATC | 2 cut(s) | 118, 129 |
| BstMAI | GTCTC | 1 cut(s) | 362 |
| BstMBI | GATC | 2 cut(s) | 115, 126 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 427 |
| BstSCI | CCNGG | 3 cut(s) | 278, 383, 556 |
| BstSFI | CTRYAG | 1 cut(s) | 540 |
| BstSNI | TACGTA | 1 cut(s) | 44 |
| BstV1I | GCAGC | 3 cut(s) | 335, 526, 554 |
| BstX2I | RGATCY | 2 cut(s) | 115, 126 |
| BstYI | RGATCY | 2 cut(s) | 115, 126 |
| BtsCI | GGATG | 4 cut(s) | 81, 288, 483, 891 |
| BtsIMutI | CAGTG | 2 cut(s) | 100, 669 |
| Cac8I | GCNNGC | 2 cut(s) | 105, 266 |
| Cfr13I | GGNCC | 2 cut(s) | 148, 814 |
| CseI | GACGC | 1 cut(s) | 427 |
| Csp6I | GTAC | 3 cut(s) | 41, 501, 913 |
| CviAII | CATG | 4 cut(s) | 498, 532, 778, 818 |
| CviJI | RGCY | 8 cut(s) | 62, 195, 304, 326, 430, 582, 617, 748 |
| CviKI_1 | RGCY | 8 cut(s) | 62, 195, 304, 326, 430, 582, 617, 748 |
| CviQI | GTAC | 3 cut(s) | 41, 501, 913 |
| DdeI | CTNAG | 2 cut(s) | 316, 438 |
| DpnI | GATC | 2 cut(s) | 117, 128 |
| DpnII | GATC | 2 cut(s) | 115, 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 903 |
| EarI | CTCTTC | 1 cut(s) | 903 |
| Eco105I | TACGTA | 1 cut(s) | 44 |
| Eco47I | GGWCC | 2 cut(s) | 148, 814 |
| Eco57I | CTGAAG | 1 cut(s) | 645 |
| EcoO109I | RGGNCCY | 1 cut(s) | 148 |
| FaeI | CATG | 4 cut(s) | 501, 535, 781, 821 |
| FaqI | GGGAC | 1 cut(s) | 161 |
| FatI | CATG | 4 cut(s) | 497, 531, 777, 817 |
| FauNDI | CATATG | 1 cut(s) | 273 |
| Fnu4HI | GCNGC | 4 cut(s) | 324, 540, 543, 774 |
| FokI | GGATG | 4 cut(s) | 88, 295, 490, 898 |
| Fsp4HI | GCNGC | 4 cut(s) | 324, 540, 543, 774 |
| FspBI | CTAG | 2 cut(s) | 858, 902 |
| GluI | GCNGC | 4 cut(s) | 324, 540, 543, 774 |
| HapII | CCGG | 3 cut(s) | 279, 385, 558 |
| HgaI | GACGC | 1 cut(s) | 427 |
| Hin1I | GRCGYC | 1 cut(s) | 419 |
| Hin1II | CATG | 4 cut(s) | 501, 535, 781, 821 |
| HinfI | GANTC | 3 cut(s) | 207, 395, 681 |
| HpaII | CCGG | 3 cut(s) | 279, 385, 558 |
| HphI | GGTGA | 2 cut(s) | 469, 862 |
| Hpy166II | GTNNAC | 2 cut(s) | 87, 435 |
| Hpy188I | TCNGA | 2 cut(s) | 59, 631 |
| Hpy188III | TCNNGA | 3 cut(s) | 67, 130, 367 |
| Hpy8I | GTNNAC | 2 cut(s) | 87, 435 |
| Hpy99I | CGWCG | 1 cut(s) | 413 |
| HpyAV | CCTTC | 3 cut(s) | 138, 454, 458 |
| HpyCH4III | ACNGT | 4 cut(s) | 95, 413, 505, 825 |
| HpyCH4IV | ACGT | 4 cut(s) | 25, 43, 424, 694 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 427 |
| HpyF3I | CTNAG | 2 cut(s) | 316, 438 |
| HpySE526I | ACGT | 4 cut(s) | 25, 43, 424, 694 |
| Hsp92I | GRCGYC | 1 cut(s) | 419 |
| Hsp92II | CATG | 4 cut(s) | 501, 535, 781, 821 |
| KflI | GGGWCCC | 1 cut(s) | 148 |
| Kzo9I | GATC | 2 cut(s) | 115, 126 |
| LpnPI | CCDG | 9 cut(s) | 126, 143, 292, 303, 398, 564, 571, 608, 931 |
| Lsp1109I | GCAGC | 3 cut(s) | 335, 526, 554 |
| LweI | GCATC | 4 cut(s) | 273, 500, 622, 876 |
| MaeI | CTAG | 2 cut(s) | 858, 902 |
| MaeII | ACGT | 4 cut(s) | 25, 43, 424, 694 |
| MalI | GATC | 2 cut(s) | 117, 128 |
| MboI | GATC | 2 cut(s) | 115, 126 |
| MboII | GAAGA | 6 cut(s) | 486, 642, 716, 754, 786, 890 |
| MfeI | CAATTG | 2 cut(s) | 165, 259 |
| MflI | RGATCY | 2 cut(s) | 115, 126 |
| MhlI | GDGCHC | 1 cut(s) | 517 |
| MluCI | AATT | 8 cut(s) | 8, 51, 165, 186, 259, 452, 552, 890 |
| MlyI | GAGTC | 2 cut(s) | 201, 389 |
| MnlI | CCTC | 6 cut(s) | 355, 725, 906, 923, 926, 954 |
| MseI | TTAA | 1 cut(s) | 357 |
| MslI | CAYNNNNRTG | 1 cut(s) | 496 |
| MspI | CCGG | 3 cut(s) | 279, 385, 558 |
| MspR9I | CCNGG | 3 cut(s) | 280, 385, 558 |
| MunI | CAATTG | 2 cut(s) | 165, 259 |
| Mva1269I | GAATGC | 1 cut(s) | 545 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 427 |
| NciI | CCSGG | 3 cut(s) | 280, 385, 558 |
| NdeI | CATATG | 1 cut(s) | 273 |
| NdeII | GATC | 2 cut(s) | 115, 126 |
| NlaIII | CATG | 4 cut(s) | 501, 535, 781, 821 |
| NlaIV | GGNNCC | 3 cut(s) | 128, 149, 150 |
| PctI | GAATGC | 1 cut(s) | 545 |
| PfeI | GAWTC | 1 cut(s) | 681 |
| PkrI | GCNGC | 4 cut(s) | 325, 541, 544, 775 |
| PleI | GAGTC | 2 cut(s) | 201, 389 |
| PpsI | GAGTC | 2 cut(s) | 201, 389 |
| Ppu21I | YACGTR | 3 cut(s) | 26, 44, 425 |
| PpuMI | RGGWCCY | 1 cut(s) | 148 |
| Psp5II | RGGWCCY | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 3 cut(s) | 128, 149, 150 |
| PspPI | GGNCC | 2 cut(s) | 148, 814 |
| PspPPI | RGGWCCY | 1 cut(s) | 148 |
| PstI | CTGCAG | 1 cut(s) | 544 |
| PsuI | RGATCY | 2 cut(s) | 115, 126 |
| RsaI | GTAC | 3 cut(s) | 42, 502, 914 |
| RsaNI | GTAC | 3 cut(s) | 41, 501, 913 |
| RseI | CAYNNNNRTG | 1 cut(s) | 496 |
| SaqAI | TTAA | 1 cut(s) | 357 |
| SatI | GCNGC | 4 cut(s) | 324, 540, 543, 774 |
| Sau3AI | GATC | 2 cut(s) | 115, 126 |
| Sau96I | GGNCC | 2 cut(s) | 148, 814 |
| SchI | GAGTC | 2 cut(s) | 201, 389 |
| ScrFI | CCNGG | 3 cut(s) | 280, 385, 558 |
| SduI | GDGCHC | 1 cut(s) | 517 |
| SfaNI | GCATC | 4 cut(s) | 273, 500, 622, 876 |
| SfcI | CTRYAG | 1 cut(s) | 540 |
| SinI | GGWCC | 2 cut(s) | 148, 814 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 496 |
| SnaBI | TACGTA | 1 cut(s) | 44 |
| Sse9I | AATT | 8 cut(s) | 8, 51, 165, 186, 259, 452, 552, 890 |
| SsiI | CCGC | 1 cut(s) | 774 |
| SspI | AATATT | 2 cut(s) | 591, 939 |
| SspMI | CTAG | 2 cut(s) | 858, 902 |
| StyD4I | CCNGG | 3 cut(s) | 278, 383, 556 |
| TaaI | ACNGT | 4 cut(s) | 95, 413, 505, 825 |
| TaiI | ACGT | 4 cut(s) | 28, 46, 427, 697 |
| TaqI | TCGA | 4 cut(s) | 66, 306, 366, 959 |
| TasI | AATT | 8 cut(s) | 8, 51, 165, 186, 259, 452, 552, 890 |
| TatI | WGTACW | 2 cut(s) | 500, 912 |
| TauI | GCSGC | 1 cut(s) | 776 |
| TfiI | GAWTC | 1 cut(s) | 681 |
| Tru1I | TTAA | 1 cut(s) | 357 |
| Tru9I | TTAA | 1 cut(s) | 357 |
| TscAI | CASTG | 2 cut(s) | 100, 669 |
| TseI | GCWGC | 3 cut(s) | 323, 539, 542 |
| TspDTI | ATGAA | 4 cut(s) | 486, 494, 796, 834 |
| TspRI | CASTG | 2 cut(s) | 100, 669 |
| VpaK11BI | GGWCC | 2 cut(s) | 148, 814 |
| XapI | RAATTY | 1 cut(s) | 186 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 120 |
| XspI | CTAG | 2 cut(s) | 858, 902 |