protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 356 |
| AccI | GTMKAC | 1 cut(s) | 600 |
| AciI | CCGC | 2 cut(s) | 219, 419 |
| AclWI | GGATC | 3 cut(s) | 713, 834, 866 |
| AcsI | RAATTY | 3 cut(s) | 161, 306, 491 |
| AcuI | CTGAAG | 1 cut(s) | 123 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 438, 439, 538 |
| AflII | CTTAAG | 1 cut(s) | 815 |
| AgeI | ACCGGT | 1 cut(s) | 548 |
| AgsI | TTSAA | 3 cut(s) | 295, 538, 809 |
| AjnI | CCWGG | 2 cut(s) | 269, 472 |
| AluBI | AGCT | 7 cut(s) | 44, 203, 446, 457, 515, 814, 838 |
| AluI | AGCT | 7 cut(s) | 44, 203, 446, 457, 515, 814, 838 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| AlwI | GGATC | 3 cut(s) | 713, 834, 866 |
| AoxI | GGCC | 1 cut(s) | 429 |
| ApoI | RAATTY | 3 cut(s) | 161, 306, 491 |
| AseI | ATTAAT | 1 cut(s) | 183 |
| AsiGI | ACCGGT | 1 cut(s) | 548 |
| AspS9I | GGNCC | 2 cut(s) | 16, 430 |
| AsuC2I | CCSGG | 1 cut(s) | 433 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 639, 672 |
| BbsI | GAAGAC | 1 cut(s) | 159 |
| BccI | CCATC | 5 cut(s) | 91, 119, 250, 602, 742 |
| BciT130I | CCWGG | 2 cut(s) | 271, 474 |
| BciVI | GTATCC | 1 cut(s) | 640 |
| BcnI | CCSGG | 1 cut(s) | 433 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BfaI | CTAG | 1 cut(s) | 638 |
| BfrI | CTTAAG | 1 cut(s) | 815 |
| BfuI | GTATCC | 1 cut(s) | 640 |
| Bme1390I | CCNGG | 3 cut(s) | 271, 433, 474 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmgT120I | GGNCC | 2 cut(s) | 16, 430 |
| BmiI | GGNNCC | 1 cut(s) | 18 |
| BmrFI | CCNGG | 3 cut(s) | 271, 433, 474 |
| BmrI | ACTGGG | 1 cut(s) | 15 |
| BmsI | GCATC | 2 cut(s) | 217, 256 |
| BmuI | ACTGGG | 1 cut(s) | 15 |
| BpiI | GAAGAC | 1 cut(s) | 159 |
| BpmI | CTGGAG | 1 cut(s) | 303 |
| BpuMI | CCSGG | 1 cut(s) | 433 |
| BsaJI | CCNNGG | 2 cut(s) | 9, 473 |
| BsaWI | WCCGGW | 1 cut(s) | 548 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 438, 439, 538 |
| Bse118I | RCCGGY | 1 cut(s) | 548 |
| Bse1I | ACTGG | 3 cut(s) | 21, 74, 532 |
| BseBI | CCWGG | 2 cut(s) | 271, 474 |
| BseDI | CCNNGG | 2 cut(s) | 9, 473 |
| BseGI | GGATG | 1 cut(s) | 121 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 438, 439, 538 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseNI | ACTGG | 3 cut(s) | 21, 74, 532 |
| BseRI | GAGGAG | 1 cut(s) | 609 |
| BshFI | GGCC | 1 cut(s) | 431 |
| BshTI | ACCGGT | 1 cut(s) | 548 |
| BsiSI | CCGG | 2 cut(s) | 433, 549 |
| BslFI | GGGAC | 1 cut(s) | 2 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 438, 439, 538 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| BsmBI | CGTCTC | 1 cut(s) | 320 |
| BsmFI | GGGAC | 1 cut(s) | 2 |
| BsnI | GGCC | 1 cut(s) | 431 |
| Bsp143I | GATC | 3 cut(s) | 718, 826, 871 |
| BspACI | CCGC | 2 cut(s) | 219, 419 |
| BspANI | GGCC | 1 cut(s) | 431 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspLI | GGNNCC | 1 cut(s) | 18 |
| BspPI | GGATC | 3 cut(s) | 713, 834, 866 |
| BspQI | GCTCTTC | 1 cut(s) | 522 |
| BspTI | CTTAAG | 1 cut(s) | 815 |
| BsrFI | RCCGGY | 1 cut(s) | 548 |
| BsrI | ACTGG | 3 cut(s) | 21, 74, 532 |
| BssAI | RCCGGY | 1 cut(s) | 548 |
| BssECI | CCNNGG | 2 cut(s) | 9, 473 |
| BssMI | GATC | 3 cut(s) | 718, 826, 871 |
| Bst2UI | CCWGG | 2 cut(s) | 271, 474 |
| Bst4CI | ACNGT | 5 cut(s) | 13, 291, 364, 570, 605 |
| Bst6I | CTCTTC | 2 cut(s) | 318, 522 |
| BstAFI | CTTAAG | 1 cut(s) | 815 |
| BstC8I | GCNNGC | 1 cut(s) | 201 |
| BstDEI | CTNAG | 3 cut(s) | 231, 589, 672 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstF5I | GGATG | 1 cut(s) | 121 |
| BstKTI | GATC | 3 cut(s) | 721, 829, 874 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 3 cut(s) | 718, 826, 871 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 200, 266, 485 |
| BstNI | CCWGG | 2 cut(s) | 271, 474 |
| BstSCI | CCNGG | 3 cut(s) | 269, 431, 472 |
| BstV2I | GAAGAC | 1 cut(s) | 159 |
| BstX2I | RGATCY | 1 cut(s) | 871 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 871 |
| BsuI | GTATCC | 1 cut(s) | 640 |
| BsuRI | GGCC | 1 cut(s) | 431 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtsCI | GGATG | 1 cut(s) | 121 |
| BtsIMutI | CAGTG | 1 cut(s) | 28 |
| Cac8I | GCNNGC | 1 cut(s) | 201 |
| Cfr10I | RCCGGY | 1 cut(s) | 548 |
| Cfr13I | GGNCC | 2 cut(s) | 16, 430 |
| CseI | GACGC | 1 cut(s) | 337 |
| CspAI | ACCGGT | 1 cut(s) | 548 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 29 |
| CviAII | CATG | 3 cut(s) | 166, 332, 679 |
| DdeI | CTNAG | 3 cut(s) | 231, 589, 672 |
| DpnI | GATC | 3 cut(s) | 720, 828, 873 |
| DpnII | GATC | 3 cut(s) | 718, 826, 871 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 356 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 356 |
| Eam1104I | CTCTTC | 2 cut(s) | 318, 522 |
| EarI | CTCTTC | 2 cut(s) | 318, 522 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 1 cut(s) | 123 |
| EcoRI | GAATTC | 1 cut(s) | 161 |
| EcoRII | CCWGG | 2 cut(s) | 269, 472 |
| Esp3I | CGTCTC | 1 cut(s) | 320 |
| FaeI | CATG | 3 cut(s) | 169, 335, 682 |
| FaqI | GGGAC | 1 cut(s) | 2 |
| FatI | CATG | 3 cut(s) | 165, 331, 678 |
| FauI | CCCGC | 2 cut(s) | 212, 412 |
| FblI | GTMKAC | 1 cut(s) | 600 |
| FokI | GGATG | 1 cut(s) | 128 |
| FspBI | CTAG | 1 cut(s) | 638 |
| GsuI | CTGGAG | 1 cut(s) | 303 |
| HaeIII | GGCC | 1 cut(s) | 431 |
| HapII | CCGG | 2 cut(s) | 433, 549 |
| HgaI | GACGC | 1 cut(s) | 337 |
| Hin1II | CATG | 3 cut(s) | 169, 335, 682 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HindIII | AAGCTT | 1 cut(s) | 812 |
| HinfI | GANTC | 3 cut(s) | 233, 341, 354 |
| HpaII | CCGG | 2 cut(s) | 433, 549 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy166II | GTNNAC | 2 cut(s) | 340, 601 |
| Hpy188I | TCNGA | 1 cut(s) | 756 |
| Hpy188III | TCNNGA | 4 cut(s) | 253, 302, 320, 745 |
| Hpy8I | GTNNAC | 2 cut(s) | 340, 601 |
| HpyAV | CCTTC | 3 cut(s) | 98, 716, 732 |
| HpyCH4III | ACNGT | 5 cut(s) | 13, 291, 364, 570, 605 |
| HpyCH4IV | ACGT | 3 cut(s) | 409, 543, 758 |
| HpyCH4V | TGCA | 3 cut(s) | 199, 389, 678 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 200, 266, 485 |
| HpyF3I | CTNAG | 3 cut(s) | 231, 589, 672 |
| HpySE526I | ACGT | 3 cut(s) | 409, 543, 758 |
| Hsp92II | CATG | 3 cut(s) | 169, 335, 682 |
| Kzo9I | GATC | 3 cut(s) | 718, 826, 871 |
| LguI | GCTCTTC | 1 cut(s) | 522 |
| LmnI | GCTCC | 1 cut(s) | 454 |
| LweI | GCATC | 2 cut(s) | 217, 256 |
| MaeI | CTAG | 1 cut(s) | 638 |
| MaeII | ACGT | 3 cut(s) | 409, 543, 758 |
| MaeIII | GTNAC | 2 cut(s) | 358, 544 |
| MalI | GATC | 3 cut(s) | 720, 828, 873 |
| MboI | GATC | 3 cut(s) | 718, 826, 871 |
| MboII | GAAGA | 5 cut(s) | 164, 236, 335, 509, 700 |
| MflI | RGATCY | 1 cut(s) | 871 |
| MluCI | AATT | 7 cut(s) | 161, 180, 306, 436, 491, 560, 666 |
| MlyI | GAGTC | 3 cut(s) | 242, 335, 363 |
| MmeI | TCCRAC | 2 cut(s) | 376, 741 |
| MnlI | CCTC | 3 cut(s) | 150, 309, 630 |
| MseI | TTAA | 7 cut(s) | 33, 39, 48, 183, 243, 366, 816 |
| MslI | CAYNNNNRTG | 1 cut(s) | 254 |
| MspCI | CTTAAG | 1 cut(s) | 815 |
| MspI | CCGG | 2 cut(s) | 433, 549 |
| MspR9I | CCNGG | 3 cut(s) | 271, 433, 474 |
| MvaI | CCWGG | 2 cut(s) | 271, 474 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 200, 266, 485 |
| NciI | CCSGG | 1 cut(s) | 433 |
| NdeII | GATC | 3 cut(s) | 718, 826, 871 |
| NlaIII | CATG | 3 cut(s) | 169, 335, 682 |
| NlaIV | GGNNCC | 1 cut(s) | 18 |
| NmeAIII | GCCGAG | 1 cut(s) | 859 |
| NmuCI | GTSAC | 1 cut(s) | 358 |
| PciSI | GCTCTTC | 1 cut(s) | 522 |
| PflFI | GACNNNGTC | 1 cut(s) | 353 |
| PinAI | ACCGGT | 1 cut(s) | 548 |
| PleI | GAGTC | 3 cut(s) | 241, 335, 362 |
| PpsI | GAGTC | 3 cut(s) | 241, 335, 362 |
| PshBI | ATTAAT | 1 cut(s) | 183 |
| Psp6I | CCWGG | 2 cut(s) | 269, 472 |
| PspGI | CCWGG | 2 cut(s) | 269, 472 |
| PspN4I | GGNNCC | 1 cut(s) | 18 |
| PspPI | GGNCC | 2 cut(s) | 16, 430 |
| PsuI | RGATCY | 1 cut(s) | 871 |
| PsyI | GACNNNGTC | 1 cut(s) | 353 |
| RseI | CAYNNNNRTG | 1 cut(s) | 254 |
| SapI | GCTCTTC | 1 cut(s) | 522 |
| SaqAI | TTAA | 7 cut(s) | 33, 39, 48, 183, 243, 366, 816 |
| Sau3AI | GATC | 3 cut(s) | 718, 826, 871 |
| Sau96I | GGNCC | 2 cut(s) | 16, 430 |
| SchI | GAGTC | 3 cut(s) | 242, 335, 363 |
| ScrFI | CCNGG | 3 cut(s) | 271, 433, 474 |
| SfaNI | GCATC | 2 cut(s) | 217, 256 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 254 |
| SmlI | CTYRAG | 1 cut(s) | 815 |
| SmoI | CTYRAG | 1 cut(s) | 815 |
| Sse9I | AATT | 7 cut(s) | 161, 180, 306, 436, 491, 560, 666 |
| SsiI | CCGC | 2 cut(s) | 219, 419 |
| SspI | AATATT | 2 cut(s) | 37, 277 |
| SspMI | CTAG | 1 cut(s) | 638 |
| StyD4I | CCNGG | 3 cut(s) | 269, 431, 472 |
| TaaI | ACNGT | 5 cut(s) | 13, 291, 364, 570, 605 |
| TaiI | ACGT | 3 cut(s) | 412, 546, 761 |
| TaqI | TCGA | 4 cut(s) | 123, 344, 717, 829 |
| TaqII | GACCGA | 1 cut(s) | 677 |
| TasI | AATT | 7 cut(s) | 161, 180, 306, 436, 491, 560, 666 |
| Tru1I | TTAA | 7 cut(s) | 33, 39, 48, 183, 243, 366, 816 |
| Tru9I | TTAA | 7 cut(s) | 33, 39, 48, 183, 243, 366, 816 |
| TscAI | CASTG | 1 cut(s) | 28 |
| TseFI | GTSAC | 1 cut(s) | 358 |
| Tsp45I | GTSAC | 1 cut(s) | 358 |
| TspDTI | ATGAA | 2 cut(s) | 154, 348 |
| TspGWI | ACGGA | 1 cut(s) | 366 |
| TspRI | CASTG | 1 cut(s) | 28 |
| Tth111I | GACNNNGTC | 1 cut(s) | 353 |
| Vha464I | CTTAAG | 1 cut(s) | 815 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |
| VspI | ATTAAT | 1 cut(s) | 183 |
| XapI | RAATTY | 3 cut(s) | 161, 306, 491 |
| XmiI | GTMKAC | 1 cut(s) | 600 |
| XspI | CTAG | 1 cut(s) | 638 |