protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 4 - 62 | 2.3e-06 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 132 - 206 | 5.6e-12 | Ankyrin repeats (3 copies) |
| Ank_5 | PF13857 | 151 - 194 | 5.4e-06 | Ankyrin repeats (many copies) |
| Ank_4 | PF13637 | 156 - 204 | 2.1e-06 | Ankyrin repeats (many copies) |
| Ank_2 | PF12796 | 212 - 278 | 9.6e-09 | Ankyrin repeats (3 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 619 |
| AccBSI | CCGCTC | 1 cut(s) | 569 |
| AccII | CGCG | 1 cut(s) | 177 |
| AciI | CCGC | 6 cut(s) | 93, 127, 567, 1066, 1106, 1341 |
| AclWI | GGATC | 3 cut(s) | 463, 1319, 1435 |
| AcoI | YGGCCR | 1 cut(s) | 1206 |
| AcsI | RAATTY | 4 cut(s) | 84, 1052, 1163, 1295 |
| AfaI | GTAC | 5 cut(s) | 426, 585, 932, 1224, 1402 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1204 |
| AflII | CTTAAG | 1 cut(s) | 1276 |
| AgsI | TTSAA | 6 cut(s) | 35, 169, 802, 1191, 1217, 1380 |
| AjnI | CCWGG | 1 cut(s) | 143 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 314, 346 |
| AleI | CACNNNNGTG | 1 cut(s) | 918 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 149, 181 |
| AluBI | AGCT | 9 cut(s) | 269, 342, 449, 464, 692, 854, 944, 1097, 1337 |
| AluI | AGCT | 9 cut(s) | 269, 342, 449, 464, 692, 854, 944, 1097, 1337 |
| Alw26I | GTCTC | 3 cut(s) | 918, 1260, 1426 |
| AlwI | GGATC | 3 cut(s) | 463, 1319, 1435 |
| AoxI | GGCC | 3 cut(s) | 141, 1063, 1206 |
| ApeKI | GCWGC | 3 cut(s) | 446, 476, 689 |
| ApoI | RAATTY | 4 cut(s) | 84, 1052, 1163, 1295 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 164 |
| AspS9I | GGNCC | 1 cut(s) | 1063 |
| AsuHPI | GGTGA | 3 cut(s) | 308, 386, 680 |
| BalI | TGGCCA | 1 cut(s) | 1208 |
| BanI | GGYRCC | 1 cut(s) | 619 |
| BbsI | GAAGAC | 2 cut(s) | 56, 282 |
| BbvI | GCAGC | 3 cut(s) | 458, 488, 701 |
| BccI | CCATC | 4 cut(s) | 133, 863, 1113, 1388 |
| BceAI | ACGGC | 2 cut(s) | 607, 900 |
| BciT130I | CCWGG | 1 cut(s) | 145 |
| BcoDI | GTCTC | 3 cut(s) | 918, 1260, 1426 |
| BfaI | CTAG | 1 cut(s) | 450 |
| BfmI | CTRYAG | 1 cut(s) | 459 |
| BfrI | CTTAAG | 1 cut(s) | 1276 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 140 |
| BglII | AGATCT | 1 cut(s) | 535 |
| BisI | GCNGC | 5 cut(s) | 447, 477, 690, 1066, 1106 |
| BlsI | GCNGC | 5 cut(s) | 448, 478, 691, 1067, 1107 |
| Bme1390I | CCNGG | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 1 cut(s) | 1063 |
| BmiI | GGNNCC | 1 cut(s) | 621 |
| BmrFI | CCNGG | 1 cut(s) | 145 |
| BmrI | ACTGGG | 1 cut(s) | 388 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BmuI | ACTGGG | 1 cut(s) | 388 |
| BpiI | GAAGAC | 2 cut(s) | 56, 282 |
| BpmI | CTGGAG | 1 cut(s) | 322 |
| Bpu10I | CCTNAGC | 1 cut(s) | 390 |
| BpuEI | CTTGAG | 1 cut(s) | 513 |
| BsaJI | CCNNGG | 8 cut(s) | 63, 144, 919, 966, 1088, 1175, 1199, 1209 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 149, 179, 320, 350 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1204 |
| Bse1I | ACTGG | 2 cut(s) | 383, 1025 |
| Bse3DI | GCAATG | 1 cut(s) | 471 |
| BseBI | CCWGG | 1 cut(s) | 145 |
| BseDI | CCNNGG | 8 cut(s) | 63, 144, 919, 966, 1088, 1175, 1199, 1209 |
| BseGI | GGATG | 2 cut(s) | 247, 1417 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1204 |
| BseMI | GCAATG | 1 cut(s) | 471 |
| BseMII | CTCAG | 2 cut(s) | 1398, 1437 |
| BseNI | ACTGG | 2 cut(s) | 383, 1025 |
| BseRI | GAGGAG | 1 cut(s) | 269 |
| BseXI | GCAGC | 3 cut(s) | 458, 488, 701 |
| BseYI | CCCAGC | 1 cut(s) | 692 |
| Bsh1236I | CGCG | 1 cut(s) | 177 |
| BshFI | GGCC | 3 cut(s) | 143, 1065, 1208 |
| BshNI | GGYRCC | 1 cut(s) | 619 |
| BslFI | GGGAC | 2 cut(s) | 109, 1193 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1204 |
| BsmAI | GTCTC | 3 cut(s) | 918, 1260, 1426 |
| BsmBI | CGTCTC | 1 cut(s) | 918 |
| BsmFI | GGGAC | 2 cut(s) | 109, 1193 |
| BsmI | GAATGC | 3 cut(s) | 64, 1271, 1290 |
| BsnI | GGCC | 3 cut(s) | 143, 1065, 1208 |
| Bsp1407I | TGTACA | 1 cut(s) | 1222 |
| Bsp143I | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| Bsp19I | CCATGG | 1 cut(s) | 966 |
| BspACI | CCGC | 6 cut(s) | 93, 127, 567, 1066, 1106, 1341 |
| BspANI | GGCC | 3 cut(s) | 143, 1065, 1208 |
| BspCNI | CTCAG | 2 cut(s) | 1397, 1436 |
| BspFNI | CGCG | 1 cut(s) | 177 |
| BspHI | TCATGA | 1 cut(s) | 1357 |
| BspLI | GGNNCC | 1 cut(s) | 621 |
| BspPI | GGATC | 3 cut(s) | 463, 1319, 1435 |
| BspQI | GCTCTTC | 3 cut(s) | 471, 576, 789 |
| BspT107I | GGYRCC | 1 cut(s) | 619 |
| BspTI | CTTAAG | 1 cut(s) | 1276 |
| BsrBI | CCGCTC | 1 cut(s) | 569 |
| BsrDI | GCAATG | 1 cut(s) | 471 |
| BsrGI | TGTACA | 1 cut(s) | 1222 |
| BsrI | ACTGG | 2 cut(s) | 383, 1025 |
| BssECI | CCNNGG | 8 cut(s) | 63, 144, 919, 966, 1088, 1175, 1199, 1209 |
| BssMI | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| BssT1I | CCWWGG | 3 cut(s) | 63, 966, 1199 |
| Bst2UI | CCWGG | 1 cut(s) | 145 |
| Bst4CI | ACNGT | 6 cut(s) | 165, 317, 920, 935, 1213, 1222 |
| Bst6I | CTCTTC | 5 cut(s) | 15, 204, 471, 576, 789 |
| BstAFI | CTTAAG | 1 cut(s) | 1276 |
| BstAUI | TGTACA | 1 cut(s) | 1222 |
| BstC8I | GCNNGC | 1 cut(s) | 1039 |
| BstDEI | CTNAG | 4 cut(s) | 390, 428, 1384, 1423 |
| BstDSI | CCRYGG | 5 cut(s) | 919, 966, 1088, 1175, 1209 |
| BstF5I | GGATG | 2 cut(s) | 247, 1417 |
| BstFNI | CGCG | 1 cut(s) | 177 |
| BstKTI | GATC | 7 cut(s) | 458, 538, 951, 1245, 1314, 1363, 1430 |
| BstMAI | GTCTC | 3 cut(s) | 918, 1260, 1426 |
| BstMBI | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 74, 140 |
| BstNI | CCWGG | 1 cut(s) | 145 |
| BstNSI | RCATGY | 4 cut(s) | 77, 494, 812, 1045 |
| BstSCI | CCNGG | 1 cut(s) | 143 |
| BstSFI | CTRYAG | 1 cut(s) | 459 |
| BstUI | CGCG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 3 cut(s) | 458, 488, 701 |
| BstV2I | GAAGAC | 2 cut(s) | 56, 282 |
| BstX2I | RGATCY | 3 cut(s) | 455, 535, 1311 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 920 |
| BstYI | RGATCY | 3 cut(s) | 455, 535, 1311 |
| BsuRI | GGCC | 3 cut(s) | 143, 1065, 1208 |
| BtgI | CCRYGG | 5 cut(s) | 919, 966, 1088, 1175, 1209 |
| BtsCI | GGATG | 2 cut(s) | 247, 1417 |
| BtsIMutI | CAGTG | 1 cut(s) | 940 |
| Cac8I | GCNNGC | 1 cut(s) | 1039 |
| CciI | TCATGA | 1 cut(s) | 1357 |
| Cfr13I | GGNCC | 1 cut(s) | 1063 |
| CseI | GACGC | 1 cut(s) | 611 |
| Csp6I | GTAC | 5 cut(s) | 425, 584, 931, 1223, 1401 |
| CviAII | CATG | 8 cut(s) | 74, 491, 683, 809, 967, 1042, 1226, 1358 |
| CviQI | GTAC | 5 cut(s) | 425, 584, 931, 1223, 1401 |
| DdeI | CTNAG | 4 cut(s) | 390, 428, 1384, 1423 |
| DpnI | GATC | 7 cut(s) | 457, 537, 950, 1244, 1313, 1362, 1429 |
| DpnII | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| EaeI | YGGCCR | 1 cut(s) | 1206 |
| Eam1104I | CTCTTC | 5 cut(s) | 15, 204, 471, 576, 789 |
| EarI | CTCTTC | 5 cut(s) | 15, 204, 471, 576, 789 |
| Eco130I | CCWWGG | 3 cut(s) | 63, 966, 1199 |
| EcoRII | CCWGG | 1 cut(s) | 143 |
| EcoT14I | CCWWGG | 3 cut(s) | 63, 966, 1199 |
| ErhI | CCWWGG | 3 cut(s) | 63, 966, 1199 |
| Esp3I | CGTCTC | 1 cut(s) | 918 |
| FaeI | CATG | 8 cut(s) | 77, 494, 686, 812, 970, 1045, 1229, 1361 |
| FaqI | GGGAC | 2 cut(s) | 109, 1193 |
| FatI | CATG | 8 cut(s) | 73, 490, 682, 808, 966, 1041, 1225, 1357 |
| FauI | CCCGC | 3 cut(s) | 86, 134, 1348 |
| Fnu4HI | GCNGC | 5 cut(s) | 447, 477, 690, 1066, 1106 |
| FokI | GGATG | 2 cut(s) | 254, 1424 |
| Fsp4HI | GCNGC | 5 cut(s) | 447, 477, 690, 1066, 1106 |
| FspBI | CTAG | 1 cut(s) | 450 |
| GluI | GCNGC | 5 cut(s) | 447, 477, 690, 1066, 1106 |
| GsaI | CCCAGC | 1 cut(s) | 696 |
| GsuI | CTGGAG | 1 cut(s) | 322 |
| HaeIII | GGCC | 3 cut(s) | 143, 1065, 1208 |
| HgaI | GACGC | 1 cut(s) | 611 |
| Hin1II | CATG | 8 cut(s) | 77, 494, 686, 812, 970, 1045, 1229, 1361 |
| HincII | GTYRAC | 1 cut(s) | 261 |
| HindII | GTYRAC | 1 cut(s) | 261 |
| HindIII | AAGCTT | 2 cut(s) | 852, 1095 |
| HinfI | GANTC | 4 cut(s) | 97, 335, 359, 526 |
| HphI | GGTGA | 3 cut(s) | 308, 386, 680 |
| Hpy166II | GTNNAC | 2 cut(s) | 261, 601 |
| Hpy188I | TCNGA | 3 cut(s) | 312, 1242, 1387 |
| Hpy188III | TCNNGA | 6 cut(s) | 11, 530, 539, 799, 1358, 1425 |
| Hpy8I | GTNNAC | 2 cut(s) | 261, 601 |
| HpyAV | CCTTC | 5 cut(s) | 293, 479, 583, 689, 1153 |
| HpyCH4III | ACNGT | 6 cut(s) | 165, 317, 920, 935, 1213, 1222 |
| HpyCH4IV | ACGT | 1 cut(s) | 187 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 74, 140 |
| HpyF3I | CTNAG | 4 cut(s) | 390, 428, 1384, 1423 |
| HpySE526I | ACGT | 1 cut(s) | 187 |
| Hsp92II | CATG | 8 cut(s) | 77, 494, 686, 812, 970, 1045, 1229, 1361 |
| Kzo9I | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| LguI | GCTCTTC | 3 cut(s) | 471, 576, 789 |
| LmnI | GCTCC | 2 cut(s) | 1154, 1342 |
| Lsp1109I | GCAGC | 3 cut(s) | 458, 488, 701 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 1 cut(s) | 450 |
| MaeII | ACGT | 1 cut(s) | 187 |
| MaeIII | GTNAC | 2 cut(s) | 374, 1081 |
| MalI | GATC | 7 cut(s) | 457, 537, 950, 1244, 1313, 1362, 1429 |
| MbiI | CCGCTC | 1 cut(s) | 569 |
| MboI | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| MfeI | CAATTG | 2 cut(s) | 772, 1058 |
| MflI | RGATCY | 3 cut(s) | 455, 535, 1311 |
| MlsI | TGGCCA | 1 cut(s) | 1208 |
| MluNI | TGGCCA | 1 cut(s) | 1208 |
| MlyI | GAGTC | 3 cut(s) | 91, 329, 520 |
| MmeI | TCCRAC | 2 cut(s) | 345, 792 |
| Mox20I | TGGCCA | 1 cut(s) | 1208 |
| MroXI | GAANNNNTTC | 1 cut(s) | 164 |
| MscI | TGGCCA | 1 cut(s) | 1208 |
| MseI | TTAA | 5 cut(s) | 81, 960, 1049, 1100, 1277 |
| MslI | CAYNNNNRTG | 1 cut(s) | 918 |
| Msp20I | TGGCCA | 1 cut(s) | 1208 |
| MspA1I | CMGCKG | 2 cut(s) | 269, 692 |
| MspCI | CTTAAG | 1 cut(s) | 1276 |
| MspR9I | CCNGG | 1 cut(s) | 145 |
| MunI | CAATTG | 2 cut(s) | 772, 1058 |
| Mva1269I | GAATGC | 3 cut(s) | 64, 1271, 1290 |
| MvaI | CCWGG | 1 cut(s) | 145 |
| MvnI | CGCG | 1 cut(s) | 177 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 74, 140 |
| NcoI | CCATGG | 1 cut(s) | 966 |
| NdeII | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| NlaIII | CATG | 8 cut(s) | 77, 494, 686, 812, 970, 1045, 1229, 1361 |
| NlaIV | GGNNCC | 1 cut(s) | 621 |
| NmuCI | GTSAC | 1 cut(s) | 374 |
| NspI | RCATGY | 4 cut(s) | 77, 494, 812, 1045 |
| OliI | CACNNNNGTG | 1 cut(s) | 918 |
| PagI | TCATGA | 1 cut(s) | 1357 |
| PciSI | GCTCTTC | 3 cut(s) | 471, 576, 789 |
| PctI | GAATGC | 3 cut(s) | 64, 1271, 1290 |
| PdmI | GAANNNNTTC | 1 cut(s) | 164 |
| PfeI | GAWTC | 1 cut(s) | 359 |
| PkrI | GCNGC | 5 cut(s) | 448, 478, 691, 1067, 1107 |
| PleI | GAGTC | 3 cut(s) | 91, 329, 520 |
| PpsI | GAGTC | 3 cut(s) | 91, 329, 520 |
| Psp6I | CCWGG | 1 cut(s) | 143 |
| PspFI | CCCAGC | 1 cut(s) | 692 |
| PspGI | CCWGG | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 1 cut(s) | 621 |
| PspPI | GGNCC | 1 cut(s) | 1063 |
| PsuI | RGATCY | 3 cut(s) | 455, 535, 1311 |
| PvuII | CAGCTG | 2 cut(s) | 269, 692 |
| RsaI | GTAC | 5 cut(s) | 426, 585, 932, 1224, 1402 |
| RsaNI | GTAC | 5 cut(s) | 425, 584, 931, 1223, 1401 |
| RseI | CAYNNNNRTG | 1 cut(s) | 918 |
| SapI | GCTCTTC | 3 cut(s) | 471, 576, 789 |
| SaqAI | TTAA | 5 cut(s) | 81, 960, 1049, 1100, 1277 |
| SatI | GCNGC | 5 cut(s) | 447, 477, 690, 1066, 1106 |
| Sau3AI | GATC | 7 cut(s) | 455, 535, 948, 1242, 1311, 1360, 1427 |
| Sau96I | GGNCC | 1 cut(s) | 1063 |
| SchI | GAGTC | 3 cut(s) | 91, 329, 520 |
| ScrFI | CCNGG | 1 cut(s) | 145 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SfcI | CTRYAG | 1 cut(s) | 459 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 918 |
| SmlI | CTYRAG | 2 cut(s) | 528, 1276 |
| SmoI | CTYRAG | 2 cut(s) | 528, 1276 |
| SsiI | CCGC | 6 cut(s) | 93, 127, 567, 1066, 1106, 1341 |
| SspMI | CTAG | 1 cut(s) | 450 |
| StyD4I | CCNGG | 1 cut(s) | 143 |
| StyI | CCWWGG | 3 cut(s) | 63, 966, 1199 |
| TaaI | ACNGT | 6 cut(s) | 165, 317, 920, 935, 1213, 1222 |
| TaiI | ACGT | 1 cut(s) | 190 |
| TaqI | TCGA | 3 cut(s) | 333, 951, 1416 |
| TatI | WGTACW | 4 cut(s) | 424, 583, 930, 1222 |
| TauI | GCSGC | 2 cut(s) | 1068, 1108 |
| TfiI | GAWTC | 1 cut(s) | 359 |
| Tru1I | TTAA | 5 cut(s) | 81, 960, 1049, 1100, 1277 |
| Tru9I | TTAA | 5 cut(s) | 81, 960, 1049, 1100, 1277 |
| TscAI | CASTG | 1 cut(s) | 940 |
| TseFI | GTSAC | 1 cut(s) | 374 |
| TseI | GCWGC | 3 cut(s) | 446, 476, 689 |
| Tsp45I | GTSAC | 1 cut(s) | 374 |
| TspDTI | ATGAA | 6 cut(s) | 17, 135, 288, 360, 671, 1346 |
| TspGWI | ACGGA | 2 cut(s) | 1069, 1164 |
| TspRI | CASTG | 1 cut(s) | 940 |
| Vha464I | CTTAAG | 1 cut(s) | 1276 |
| XapI | RAATTY | 4 cut(s) | 84, 1052, 1163, 1295 |
| XceI | RCATGY | 4 cut(s) | 77, 494, 812, 1045 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 989, 1116 |
| XmnI | GAANNNNTTC | 1 cut(s) | 164 |
| XspI | CTAG | 1 cut(s) | 450 |