protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 13 - 36 | 4.8e-09 | Domain of unknown function (DUF4219) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 110 |
| AccI | GTMKAC | 1 cut(s) | 277 |
| AccII | CGCG | 2 cut(s) | 462, 744 |
| AciI | CCGC | 3 cut(s) | 180, 725, 742 |
| AclWI | GGATC | 1 cut(s) | 138 |
| AcoI | YGGCCR | 3 cut(s) | 81, 906, 951 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 476 |
| AflII | CTTAAG | 1 cut(s) | 973 |
| AgsI | TTSAA | 2 cut(s) | 662, 890 |
| AjnI | CCWGG | 2 cut(s) | 215, 256 |
| AluBI | AGCT | 4 cut(s) | 8, 72, 509, 623 |
| AluI | AGCT | 4 cut(s) | 8, 72, 509, 623 |
| Alw26I | GTCTC | 2 cut(s) | 247, 735 |
| AlwI | GGATC | 1 cut(s) | 138 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 733 |
| Ama87I | CYCGRG | 2 cut(s) | 60, 470 |
| AoxI | GGCC | 5 cut(s) | 81, 219, 302, 906, 951 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| AspLEI | GCGC | 4 cut(s) | 333, 363, 746, 830 |
| AspS9I | GGNCC | 1 cut(s) | 219 |
| AsuC2I | CCSGG | 3 cut(s) | 471, 472, 910 |
| AsuHPI | GGTGA | 2 cut(s) | 389, 824 |
| AvaI | CYCGRG | 2 cut(s) | 60, 470 |
| BalI | TGGCCA | 2 cut(s) | 83, 953 |
| BanI | GGYRCC | 1 cut(s) | 110 |
| BbsI | GAAGAC | 1 cut(s) | 594 |
| BbvI | GCAGC | 1 cut(s) | 17 |
| BccI | CCATC | 2 cut(s) | 337, 818 |
| BceAI | ACGGC | 2 cut(s) | 514, 517 |
| BciT130I | CCWGG | 2 cut(s) | 217, 258 |
| BcnI | CCSGG | 3 cut(s) | 471, 472, 910 |
| BcoDI | GTCTC | 2 cut(s) | 247, 735 |
| BfaI | CTAG | 1 cut(s) | 915 |
| BfmI | CTRYAG | 2 cut(s) | 21, 336 |
| BfoI | RGCGCY | 1 cut(s) | 831 |
| BfrI | CTTAAG | 1 cut(s) | 973 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 5 cut(s) | 217, 258, 471, 472, 910 |
| BmeT110I | CYCGRG | 2 cut(s) | 60, 470 |
| BmgT120I | GGNCC | 1 cut(s) | 219 |
| BmiI | GGNNCC | 2 cut(s) | 112, 932 |
| BmrFI | CCNGG | 5 cut(s) | 217, 258, 471, 472, 910 |
| BmsI | GCATC | 1 cut(s) | 971 |
| BpiI | GAAGAC | 1 cut(s) | 594 |
| BpmI | CTGGAG | 1 cut(s) | 387 |
| Bpu10I | CCTNAGC | 1 cut(s) | 940 |
| BpuMI | CCSGG | 3 cut(s) | 471, 472, 910 |
| Bsa29I | ATCGAT | 1 cut(s) | 268 |
| BsaI | GGTCTC | 1 cut(s) | 247 |
| BsaJI | CCNNGG | 3 cut(s) | 84, 216, 470 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 476 |
| Bse118I | RCCGGY | 1 cut(s) | 984 |
| Bse1I | ACTGG | 4 cut(s) | 121, 284, 370, 954 |
| Bse3DI | GCAATG | 3 cut(s) | 324, 354, 391 |
| BseBI | CCWGG | 2 cut(s) | 217, 258 |
| BseCI | ATCGAT | 1 cut(s) | 268 |
| BseDI | CCNNGG | 3 cut(s) | 84, 216, 470 |
| BseGI | GGATG | 4 cut(s) | 190, 348, 466, 986 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 476 |
| BseMI | GCAATG | 3 cut(s) | 324, 354, 391 |
| BseMII | CTCAG | 1 cut(s) | 738 |
| BseNI | ACTGG | 4 cut(s) | 121, 284, 370, 954 |
| BseXI | GCAGC | 1 cut(s) | 17 |
| BseYI | CCCAGC | 1 cut(s) | 475 |
| Bsh1236I | CGCG | 2 cut(s) | 462, 744 |
| BshFI | GGCC | 5 cut(s) | 83, 221, 304, 908, 953 |
| BshNI | GGYRCC | 1 cut(s) | 110 |
| BshVI | ATCGAT | 1 cut(s) | 268 |
| BsiHKCI | CYCGRG | 2 cut(s) | 60, 470 |
| BsiSI | CCGG | 3 cut(s) | 471, 909, 985 |
| BslFI | GGGAC | 1 cut(s) | 925 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 476 |
| BsmAI | GTCTC | 2 cut(s) | 247, 735 |
| BsmFI | GGGAC | 1 cut(s) | 925 |
| BsmI | GAATGC | 1 cut(s) | 968 |
| BsnI | GGCC | 5 cut(s) | 83, 221, 304, 908, 953 |
| Bso31I | GGTCTC | 1 cut(s) | 247 |
| BsoBI | CYCGRG | 2 cut(s) | 60, 470 |
| Bsp143I | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| Bsp68I | TCGCGA | 1 cut(s) | 462 |
| BspACI | CCGC | 3 cut(s) | 180, 725, 742 |
| BspANI | GGCC | 5 cut(s) | 83, 221, 304, 908, 953 |
| BspCNI | CTCAG | 1 cut(s) | 739 |
| BspDI | ATCGAT | 1 cut(s) | 268 |
| BspFNI | CGCG | 2 cut(s) | 462, 744 |
| BspLI | GGNNCC | 2 cut(s) | 112, 932 |
| BspMAI | CTGCAG | 1 cut(s) | 25 |
| BspPI | GGATC | 1 cut(s) | 138 |
| BspQI | GCTCTTC | 2 cut(s) | 321, 516 |
| BspT107I | GGYRCC | 1 cut(s) | 110 |
| BspTI | CTTAAG | 1 cut(s) | 973 |
| BspTNI | GGTCTC | 1 cut(s) | 247 |
| BsrDI | GCAATG | 3 cut(s) | 324, 354, 391 |
| BsrFI | RCCGGY | 1 cut(s) | 984 |
| BsrI | ACTGG | 4 cut(s) | 121, 284, 370, 954 |
| BssAI | RCCGGY | 1 cut(s) | 984 |
| BssECI | CCNNGG | 3 cut(s) | 84, 216, 470 |
| BssMI | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst2UI | CCWGG | 2 cut(s) | 217, 258 |
| Bst4CI | ACNGT | 5 cut(s) | 50, 152, 564, 962, 1019 |
| Bst6I | CTCTTC | 2 cut(s) | 321, 516 |
| BstAFI | CTTAAG | 1 cut(s) | 973 |
| BstC8I | GCNNGC | 2 cut(s) | 778, 986 |
| BstDEI | CTNAG | 4 cut(s) | 609, 747, 812, 940 |
| BstF5I | GGATG | 4 cut(s) | 190, 348, 466, 986 |
| BstFNI | CGCG | 2 cut(s) | 462, 744 |
| BstH2I | RGCGCY | 1 cut(s) | 831 |
| BstHHI | GCGC | 4 cut(s) | 333, 363, 746, 830 |
| BstKTI | GATC | 4 cut(s) | 133, 268, 450, 1011 |
| BstMAI | GTCTC | 2 cut(s) | 247, 735 |
| BstMBI | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 161, 227, 950 |
| BstNI | CCWGG | 2 cut(s) | 217, 258 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstSCI | CCNGG | 5 cut(s) | 215, 256, 469, 470, 908 |
| BstSFI | CTRYAG | 2 cut(s) | 21, 336 |
| BstUI | CGCG | 2 cut(s) | 462, 744 |
| BstV1I | GCAGC | 1 cut(s) | 17 |
| BstV2I | GAAGAC | 1 cut(s) | 594 |
| Bsu15I | ATCGAT | 1 cut(s) | 268 |
| BsuRI | GGCC | 5 cut(s) | 83, 221, 304, 908, 953 |
| BsuTUI | ATCGAT | 1 cut(s) | 268 |
| BtsCI | GGATG | 4 cut(s) | 190, 348, 466, 986 |
| BtsIMutI | CAGTG | 2 cut(s) | 157, 363 |
| BtuMI | TCGCGA | 1 cut(s) | 462 |
| Cac8I | GCNNGC | 2 cut(s) | 778, 986 |
| CaiI | CAGNNNCTG | 1 cut(s) | 733 |
| CfoI | GCGC | 4 cut(s) | 333, 363, 746, 830 |
| Cfr10I | RCCGGY | 1 cut(s) | 984 |
| Cfr13I | GGNCC | 1 cut(s) | 219 |
| Cfr9I | CCCGGG | 1 cut(s) | 470 |
| ClaI | ATCGAT | 1 cut(s) | 268 |
| CviAII | CATG | 5 cut(s) | 116, 161, 231, 374, 676 |
| DdeI | CTNAG | 4 cut(s) | 609, 747, 812, 940 |
| DpnI | GATC | 4 cut(s) | 132, 267, 449, 1010 |
| DpnII | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| DraI | TTTAAA | 1 cut(s) | 196 |
| EaeI | YGGCCR | 3 cut(s) | 81, 906, 951 |
| Eam1104I | CTCTTC | 2 cut(s) | 321, 516 |
| EarI | CTCTTC | 2 cut(s) | 321, 516 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| Eco31I | GGTCTC | 1 cut(s) | 247 |
| Eco88I | CYCGRG | 2 cut(s) | 60, 470 |
| EcoRII | CCWGG | 2 cut(s) | 215, 256 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| FaeI | CATG | 5 cut(s) | 119, 164, 234, 377, 679 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 59, 91 |
| FaqI | GGGAC | 1 cut(s) | 925 |
| FatI | CATG | 5 cut(s) | 115, 160, 230, 373, 675 |
| FauI | CCCGC | 1 cut(s) | 173 |
| FblI | GTMKAC | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 4 cut(s) | 197, 355, 453, 993 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 1 cut(s) | 915 |
| GlaI | GCGC | 4 cut(s) | 332, 362, 745, 829 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsaI | CCCAGC | 1 cut(s) | 479 |
| GsuI | CTGGAG | 1 cut(s) | 387 |
| HaeII | RGCGCY | 1 cut(s) | 831 |
| HaeIII | GGCC | 5 cut(s) | 83, 221, 304, 908, 953 |
| HapII | CCGG | 3 cut(s) | 471, 909, 985 |
| HhaI | GCGC | 4 cut(s) | 333, 363, 746, 830 |
| Hin1II | CATG | 5 cut(s) | 119, 164, 234, 377, 679 |
| Hin6I | GCGC | 4 cut(s) | 331, 361, 744, 828 |
| HinP1I | GCGC | 4 cut(s) | 331, 361, 744, 828 |
| HincII | GTYRAC | 1 cut(s) | 278 |
| HindII | GTYRAC | 1 cut(s) | 278 |
| HinfI | GANTC | 4 cut(s) | 296, 425, 605, 886 |
| HpaII | CCGG | 3 cut(s) | 471, 909, 985 |
| HphI | GGTGA | 2 cut(s) | 389, 824 |
| Hpy166II | GTNNAC | 1 cut(s) | 278 |
| Hpy188I | TCNGA | 1 cut(s) | 135 |
| Hpy188III | TCNNGA | 5 cut(s) | 169, 252, 461, 650, 859 |
| Hpy8I | GTNNAC | 1 cut(s) | 278 |
| HpyAV | CCTTC | 5 cut(s) | 101, 258, 350, 755, 944 |
| HpyCH4III | ACNGT | 5 cut(s) | 50, 152, 564, 962, 1019 |
| HpyCH4IV | ACGT | 1 cut(s) | 646 |
| HpyCH4V | TGCA | 4 cut(s) | 23, 164, 485, 683 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 161, 227, 950 |
| HpyF3I | CTNAG | 4 cut(s) | 609, 747, 812, 940 |
| HpySE526I | ACGT | 1 cut(s) | 646 |
| Hsp92II | CATG | 5 cut(s) | 119, 164, 234, 377, 679 |
| HspAI | GCGC | 4 cut(s) | 331, 361, 744, 828 |
| KroI | GCCGGC | 1 cut(s) | 984 |
| KroNI | GCCGGC | 1 cut(s) | 986 |
| Kzo9I | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| LguI | GCTCTTC | 2 cut(s) | 321, 516 |
| Lsp1109I | GCAGC | 1 cut(s) | 17 |
| LweI | GCATC | 1 cut(s) | 971 |
| MaeI | CTAG | 1 cut(s) | 915 |
| MaeII | ACGT | 1 cut(s) | 646 |
| MaeIII | GTNAC | 3 cut(s) | 286, 817, 956 |
| MalI | GATC | 4 cut(s) | 132, 267, 449, 1010 |
| MboI | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| MboII | GAAGA | 8 cut(s) | 335, 338, 365, 449, 503, 599, 653, 770 |
| MfeI | CAATTG | 2 cut(s) | 12, 902 |
| MlsI | TGGCCA | 2 cut(s) | 83, 953 |
| MluCI | AATT | 6 cut(s) | 12, 31, 306, 695, 902, 1004 |
| MluNI | TGGCCA | 2 cut(s) | 83, 953 |
| MlyI | GAGTC | 2 cut(s) | 434, 599 |
| MmeI | TCCRAC | 1 cut(s) | 32 |
| MnlI | CCTC | 5 cut(s) | 129, 294, 362, 709, 803 |
| Mox20I | TGGCCA | 2 cut(s) | 83, 953 |
| MroNI | GCCGGC | 1 cut(s) | 984 |
| MscI | TGGCCA | 2 cut(s) | 83, 953 |
| MseI | TTAA | 7 cut(s) | 30, 66, 195, 242, 534, 575, 974 |
| Msp20I | TGGCCA | 2 cut(s) | 83, 953 |
| MspCI | CTTAAG | 1 cut(s) | 973 |
| MspI | CCGG | 3 cut(s) | 471, 909, 985 |
| MspR9I | CCNGG | 5 cut(s) | 217, 258, 471, 472, 910 |
| MunI | CAATTG | 2 cut(s) | 12, 902 |
| Mva1269I | GAATGC | 1 cut(s) | 968 |
| MvaI | CCWGG | 2 cut(s) | 217, 258 |
| MvnI | CGCG | 2 cut(s) | 462, 744 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 161, 227, 950 |
| NaeI | GCCGGC | 1 cut(s) | 986 |
| NciI | CCSGG | 3 cut(s) | 471, 472, 910 |
| NdeII | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| NgoMIV | GCCGGC | 1 cut(s) | 984 |
| NlaIII | CATG | 5 cut(s) | 119, 164, 234, 377, 679 |
| NlaIV | GGNNCC | 2 cut(s) | 112, 932 |
| NruI | TCGCGA | 1 cut(s) | 462 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PciSI | GCTCTTC | 2 cut(s) | 321, 516 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 274 |
| PctI | GAATGC | 1 cut(s) | 968 |
| PdiI | GCCGGC | 1 cut(s) | 986 |
| PfeI | GAWTC | 2 cut(s) | 296, 886 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PleI | GAGTC | 2 cut(s) | 433, 599 |
| PpsI | GAGTC | 2 cut(s) | 433, 599 |
| Psp6I | CCWGG | 2 cut(s) | 215, 256 |
| PspFI | CCCAGC | 1 cut(s) | 475 |
| PspGI | CCWGG | 2 cut(s) | 215, 256 |
| PspN4I | GGNNCC | 2 cut(s) | 112, 932 |
| PspPI | GGNCC | 1 cut(s) | 219 |
| PstI | CTGCAG | 1 cut(s) | 25 |
| PstNI | CAGNNNCTG | 1 cut(s) | 733 |
| RruI | TCGCGA | 1 cut(s) | 462 |
| SalI | GTCGAC | 1 cut(s) | 276 |
| SapI | GCTCTTC | 2 cut(s) | 321, 516 |
| SaqAI | TTAA | 7 cut(s) | 30, 66, 195, 242, 534, 575, 974 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 4 cut(s) | 130, 265, 447, 1008 |
| Sau96I | GGNCC | 1 cut(s) | 219 |
| SchI | GAGTC | 2 cut(s) | 434, 599 |
| ScrFI | CCNGG | 5 cut(s) | 217, 258, 471, 472, 910 |
| SetI | ASST | 9 cut(s) | 10, 74, 140, 250, 511, 625, 649, 837, 936 |
| SfaNI | GCATC | 1 cut(s) | 971 |
| SfcI | CTRYAG | 2 cut(s) | 21, 336 |
| SmaI | CCCGGG | 1 cut(s) | 472 |
| SmlI | CTYRAG | 1 cut(s) | 973 |
| SmoI | CTYRAG | 1 cut(s) | 973 |
| Sse9I | AATT | 6 cut(s) | 12, 31, 306, 695, 902, 1004 |
| SsiI | CCGC | 3 cut(s) | 180, 725, 742 |
| SspI | AATATT | 1 cut(s) | 893 |
| SspMI | CTAG | 1 cut(s) | 915 |
| StyD4I | CCNGG | 5 cut(s) | 215, 256, 469, 470, 908 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TaaI | ACNGT | 5 cut(s) | 50, 152, 564, 962, 1019 |
| TaiI | ACGT | 1 cut(s) | 649 |
| TaqI | TCGA | 7 cut(s) | 105, 140, 251, 268, 277, 299, 551 |
| TasI | AATT | 6 cut(s) | 12, 31, 306, 695, 902, 1004 |
| TfiI | GAWTC | 2 cut(s) | 296, 886 |
| Tru1I | TTAA | 7 cut(s) | 30, 66, 195, 242, 534, 575, 974 |
| Tru9I | TTAA | 7 cut(s) | 30, 66, 195, 242, 534, 575, 974 |
| TscAI | CASTG | 2 cut(s) | 157, 370 |
| TseI | GCWGC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 6 cut(s) | 158, 201, 400, 483, 842, 913 |
| TspMI | CCCGGG | 1 cut(s) | 470 |
| TspRI | CASTG | 2 cut(s) | 157, 370 |
| Vha464I | CTTAAG | 1 cut(s) | 973 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XmaI | CCCGGG | 1 cut(s) | 470 |
| XmiI | GTMKAC | 1 cut(s) | 277 |
| XspI | CTAG | 1 cut(s) | 915 |