protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 205 |
| AciI | CCGC | 2 cut(s) | 472, 512 |
| AcoI | YGGCCR | 1 cut(s) | 612 |
| AcsI | RAATTY | 3 cut(s) | 458, 569, 701 |
| AcvI | CACGTG | 1 cut(s) | 38 |
| AfaI | GTAC | 4 cut(s) | 171, 338, 630, 802 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 610 |
| AflII | CTTAAG | 1 cut(s) | 682 |
| AgsI | TTSAA | 3 cut(s) | 31, 597, 623 |
| AhlI | ACTAGT | 1 cut(s) | 803 |
| AjnI | CCWGG | 1 cut(s) | 5 |
| AleI | CACNNNNGTG | 1 cut(s) | 324 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 11, 43 |
| AluBI | AGCT | 5 cut(s) | 131, 278, 285, 350, 503 |
| AluI | AGCT | 5 cut(s) | 131, 278, 285, 350, 503 |
| Alw26I | GTCTC | 3 cut(s) | 211, 324, 666 |
| AoxI | GGCC | 3 cut(s) | 3, 469, 612 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| ApoI | RAATTY | 3 cut(s) | 458, 569, 701 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 26 |
| AspS9I | GGNCC | 1 cut(s) | 469 |
| AsuHPI | GGTGA | 2 cut(s) | 170, 266 |
| BalI | TGGCCA | 1 cut(s) | 614 |
| BanI | GGYRCC | 1 cut(s) | 205 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 153, 185 |
| BbrPI | CACGTG | 1 cut(s) | 38 |
| BbsI | GAAGAC | 1 cut(s) | 144 |
| BbvI | GCAGC | 1 cut(s) | 287 |
| BccI | CCATC | 1 cut(s) | 519 |
| BceAI | ACGGC | 2 cut(s) | 193, 306 |
| BciT130I | CCWGG | 1 cut(s) | 7 |
| BcoDI | GTCTC | 3 cut(s) | 211, 324, 666 |
| BcuI | ACTAGT | 1 cut(s) | 803 |
| BfaI | CTAG | 1 cut(s) | 804 |
| BfrI | CTTAAG | 1 cut(s) | 682 |
| BisI | GCNGC | 3 cut(s) | 276, 472, 512 |
| BlsI | GCNGC | 3 cut(s) | 277, 473, 513 |
| Bme1390I | CCNGG | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 469 |
| BmiI | GGNNCC | 1 cut(s) | 207 |
| BmrFI | CCNGG | 1 cut(s) | 7 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 144 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaAI | YACGTR | 1 cut(s) | 38 |
| BsaJI | CCNNGG | 6 cut(s) | 6, 372, 494, 581, 605, 615 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 11, 41 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 610 |
| Bse1I | ACTGG | 1 cut(s) | 431 |
| BseBI | CCWGG | 1 cut(s) | 7 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 6 cut(s) | 6, 372, 494, 581, 605, 615 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 610 |
| BseNI | ACTGG | 1 cut(s) | 431 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseXI | GCAGC | 1 cut(s) | 287 |
| BseYI | CCCAGC | 1 cut(s) | 278 |
| BshFI | GGCC | 3 cut(s) | 5, 471, 614 |
| BshNI | GGYRCC | 1 cut(s) | 205 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BslFI | GGGAC | 1 cut(s) | 599 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 610 |
| BsmAI | GTCTC | 3 cut(s) | 211, 324, 666 |
| BsmBI | CGTCTC | 1 cut(s) | 324 |
| BsmFI | GGGAC | 1 cut(s) | 599 |
| BsmI | GAATGC | 2 cut(s) | 677, 696 |
| BsnI | GGCC | 3 cut(s) | 5, 471, 614 |
| Bsp1407I | TGTACA | 1 cut(s) | 628 |
| Bsp143I | GATC | 2 cut(s) | 354, 648 |
| Bsp19I | CCATGG | 1 cut(s) | 372 |
| BspACI | CCGC | 2 cut(s) | 472, 512 |
| BspANI | GGCC | 3 cut(s) | 5, 471, 614 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspLI | GGNNCC | 1 cut(s) | 207 |
| BspT107I | GGYRCC | 1 cut(s) | 205 |
| BspTI | CTTAAG | 1 cut(s) | 682 |
| BsrGI | TGTACA | 1 cut(s) | 628 |
| BsrI | ACTGG | 1 cut(s) | 431 |
| BssECI | CCNNGG | 6 cut(s) | 6, 372, 494, 581, 605, 615 |
| BssMI | GATC | 2 cut(s) | 354, 648 |
| BssT1I | CCWWGG | 2 cut(s) | 372, 605 |
| Bst2UI | CCWGG | 1 cut(s) | 7 |
| Bst4CI | ACNGT | 4 cut(s) | 27, 341, 619, 628 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstAFI | CTTAAG | 1 cut(s) | 682 |
| BstAUI | TGTACA | 1 cut(s) | 628 |
| BstBAI | YACGTR | 1 cut(s) | 38 |
| BstC8I | GCNNGC | 1 cut(s) | 445 |
| BstDSI | CCRYGG | 4 cut(s) | 372, 494, 581, 615 |
| BstKTI | GATC | 2 cut(s) | 357, 651 |
| BstMAI | GTCTC | 3 cut(s) | 211, 324, 666 |
| BstMBI | GATC | 2 cut(s) | 354, 648 |
| BstNI | CCWGG | 1 cut(s) | 7 |
| BstNSI | RCATGY | 1 cut(s) | 451 |
| BstSCI | CCNGG | 1 cut(s) | 5 |
| BstV1I | GCAGC | 1 cut(s) | 287 |
| BstV2I | GAAGAC | 1 cut(s) | 144 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 326 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuRI | GGCC | 3 cut(s) | 5, 471, 614 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 4 cut(s) | 372, 494, 581, 615 |
| BtsIMutI | CAGTG | 1 cut(s) | 346 |
| Cac8I | GCNNGC | 1 cut(s) | 445 |
| Cfr13I | GGNCC | 1 cut(s) | 469 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 4 cut(s) | 170, 337, 629, 801 |
| CviAII | CATG | 5 cut(s) | 269, 373, 448, 632, 797 |
| CviQI | GTAC | 4 cut(s) | 170, 337, 629, 801 |
| DpnI | GATC | 2 cut(s) | 356, 650 |
| DpnII | GATC | 2 cut(s) | 354, 648 |
| EaeI | YGGCCR | 1 cut(s) | 612 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| Eco130I | CCWWGG | 2 cut(s) | 372, 605 |
| Eco72I | CACGTG | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 5 |
| EcoT14I | CCWWGG | 2 cut(s) | 372, 605 |
| EcoT22I | ATGCAT | 1 cut(s) | 815 |
| ErhI | CCWWGG | 2 cut(s) | 372, 605 |
| Esp3I | CGTCTC | 1 cut(s) | 324 |
| FaeI | CATG | 5 cut(s) | 272, 376, 451, 635, 800 |
| FaqI | GGGAC | 1 cut(s) | 599 |
| FatI | CATG | 5 cut(s) | 268, 372, 447, 631, 796 |
| Fnu4HI | GCNGC | 3 cut(s) | 276, 472, 512 |
| Fsp4HI | GCNGC | 3 cut(s) | 276, 472, 512 |
| FspBI | CTAG | 1 cut(s) | 804 |
| GluI | GCNGC | 3 cut(s) | 276, 472, 512 |
| GsaI | CCCAGC | 1 cut(s) | 282 |
| HaeIII | GGCC | 3 cut(s) | 5, 471, 614 |
| HgaI | GACGC | 1 cut(s) | 197 |
| Hin1II | CATG | 5 cut(s) | 272, 376, 451, 635, 800 |
| HincII | GTYRAC | 1 cut(s) | 123 |
| HindII | GTYRAC | 1 cut(s) | 123 |
| HindIII | AAGCTT | 1 cut(s) | 501 |
| HphI | GGTGA | 2 cut(s) | 170, 266 |
| Hpy166II | GTNNAC | 2 cut(s) | 123, 187 |
| Hpy188I | TCNGA | 1 cut(s) | 648 |
| Hpy8I | GTNNAC | 2 cut(s) | 123, 187 |
| HpyAV | CCTTC | 5 cut(s) | 155, 169, 275, 338, 559 |
| HpyCH4III | ACNGT | 4 cut(s) | 27, 341, 619, 628 |
| HpyCH4IV | ACGT | 2 cut(s) | 37, 49 |
| HpyCH4V | TGCA | 6 cut(s) | 380, 447, 670, 677, 694, 813 |
| HpySE526I | ACGT | 2 cut(s) | 37, 49 |
| Hsp92II | CATG | 5 cut(s) | 272, 376, 451, 635, 800 |
| Kzo9I | GATC | 2 cut(s) | 354, 648 |
| LmnI | GCTCC | 4 cut(s) | 164, 282, 347, 560 |
| LpnPI | CCDG | 8 cut(s) | 19, 141, 141, 209, 264, 335, 401, 444 |
| Lsp1109I | GCAGC | 1 cut(s) | 287 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 1 cut(s) | 804 |
| MaeII | ACGT | 2 cut(s) | 37, 49 |
| MaeIII | GTNAC | 2 cut(s) | 38, 487 |
| MalI | GATC | 2 cut(s) | 356, 650 |
| MboI | GATC | 2 cut(s) | 354, 648 |
| MboII | GAAGA | 3 cut(s) | 83, 149, 735 |
| MfeI | CAATTG | 1 cut(s) | 464 |
| MlsI | TGGCCA | 1 cut(s) | 614 |
| MluCI | AATT | 7 cut(s) | 458, 464, 569, 598, 640, 701, 768 |
| MluNI | TGGCCA | 1 cut(s) | 614 |
| MnlI | CCTC | 6 cut(s) | 4, 105, 109, 193, 433, 629 |
| Mox20I | TGGCCA | 1 cut(s) | 614 |
| Mph1103I | ATGCAT | 1 cut(s) | 815 |
| MroXI | GAANNNNTTC | 1 cut(s) | 26 |
| MscI | TGGCCA | 1 cut(s) | 614 |
| MseI | TTAA | 5 cut(s) | 366, 455, 506, 683, 780 |
| MslI | CAYNNNNRTG | 1 cut(s) | 324 |
| Msp20I | TGGCCA | 1 cut(s) | 614 |
| MspA1I | CMGCKG | 2 cut(s) | 131, 278 |
| MspCI | CTTAAG | 1 cut(s) | 682 |
| MspR9I | CCNGG | 1 cut(s) | 7 |
| MunI | CAATTG | 1 cut(s) | 464 |
| Mva1269I | GAATGC | 2 cut(s) | 677, 696 |
| MvaI | CCWGG | 1 cut(s) | 7 |
| NcoI | CCATGG | 1 cut(s) | 372 |
| NdeII | GATC | 2 cut(s) | 354, 648 |
| NlaIII | CATG | 5 cut(s) | 272, 376, 451, 635, 800 |
| NlaIV | GGNNCC | 1 cut(s) | 207 |
| NmuCI | GTSAC | 1 cut(s) | 38 |
| NsiI | ATGCAT | 1 cut(s) | 815 |
| NspI | RCATGY | 1 cut(s) | 451 |
| OliI | CACNNNNGTG | 1 cut(s) | 324 |
| PctI | GAATGC | 2 cut(s) | 677, 696 |
| PdmI | GAANNNNTTC | 1 cut(s) | 26 |
| PkrI | GCNGC | 3 cut(s) | 277, 473, 513 |
| PmaCI | CACGTG | 1 cut(s) | 38 |
| PmlI | CACGTG | 1 cut(s) | 38 |
| Ppu21I | YACGTR | 1 cut(s) | 38 |
| Psp6I | CCWGG | 1 cut(s) | 5 |
| PspCI | CACGTG | 1 cut(s) | 38 |
| PspFI | CCCAGC | 1 cut(s) | 278 |
| PspGI | CCWGG | 1 cut(s) | 5 |
| PspN4I | GGNNCC | 1 cut(s) | 207 |
| PspPI | GGNCC | 1 cut(s) | 469 |
| PvuII | CAGCTG | 2 cut(s) | 131, 278 |
| RsaI | GTAC | 4 cut(s) | 171, 338, 630, 802 |
| RsaNI | GTAC | 4 cut(s) | 170, 337, 629, 801 |
| RseI | CAYNNNNRTG | 1 cut(s) | 324 |
| SaqAI | TTAA | 5 cut(s) | 366, 455, 506, 683, 780 |
| SatI | GCNGC | 3 cut(s) | 276, 472, 512 |
| Sau3AI | GATC | 2 cut(s) | 354, 648 |
| Sau96I | GGNCC | 1 cut(s) | 469 |
| ScrFI | CCNGG | 1 cut(s) | 7 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 324 |
| SmlI | CTYRAG | 1 cut(s) | 682 |
| SmoI | CTYRAG | 1 cut(s) | 682 |
| SpeI | ACTAGT | 1 cut(s) | 803 |
| Sse9I | AATT | 7 cut(s) | 458, 464, 569, 598, 640, 701, 768 |
| SsiI | CCGC | 2 cut(s) | 472, 512 |
| SspMI | CTAG | 1 cut(s) | 804 |
| StyD4I | CCNGG | 1 cut(s) | 5 |
| StyI | CCWWGG | 2 cut(s) | 372, 605 |
| TaaI | ACNGT | 4 cut(s) | 27, 341, 619, 628 |
| TaiI | ACGT | 2 cut(s) | 40, 52 |
| TaqI | TCGA | 2 cut(s) | 102, 357 |
| TasI | AATT | 7 cut(s) | 458, 464, 569, 598, 640, 701, 768 |
| TatI | WGTACW | 3 cut(s) | 169, 336, 628 |
| TauI | GCSGC | 2 cut(s) | 474, 514 |
| Tru1I | TTAA | 5 cut(s) | 366, 455, 506, 683, 780 |
| Tru9I | TTAA | 5 cut(s) | 366, 455, 506, 683, 780 |
| TscAI | CASTG | 1 cut(s) | 346 |
| TseFI | GTSAC | 1 cut(s) | 38 |
| TseI | GCWGC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 38 |
| TspDTI | ATGAA | 2 cut(s) | 150, 257 |
| TspGWI | ACGGA | 2 cut(s) | 475, 570 |
| TspRI | CASTG | 1 cut(s) | 346 |
| Vha464I | CTTAAG | 1 cut(s) | 682 |
| XapI | RAATTY | 3 cut(s) | 458, 569, 701 |
| XceI | RCATGY | 1 cut(s) | 451 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 395, 522 |
| XmnI | GAANNNNTTC | 1 cut(s) | 26 |
| XspI | CTAG | 1 cut(s) | 804 |
| Zsp2I | ATGCAT | 1 cut(s) | 815 |