protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1043 |
| AccII | CGCG | 1 cut(s) | 775 |
| AciI | CCGC | 1 cut(s) | 198 |
| AcsI | RAATTY | 4 cut(s) | 388, 498, 507, 1137 |
| AcuI | CTGAAG | 1 cut(s) | 69 |
| AcvI | CACGTG | 1 cut(s) | 217 |
| AdeI | CACNNNGTG | 1 cut(s) | 247 |
| AfaI | GTAC | 5 cut(s) | 110, 375, 441, 445, 906 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 53 |
| AflII | CTTAAG | 1 cut(s) | 1126 |
| AflIII | ACRYGT | 1 cut(s) | 773 |
| AjiI | CACGTC | 1 cut(s) | 529 |
| AjnI | CCWGG | 2 cut(s) | 11, 1087 |
| AluBI | AGCT | 7 cut(s) | 209, 265, 314, 593, 854, 874, 1329 |
| AluI | AGCT | 7 cut(s) | 209, 265, 314, 593, 854, 874, 1329 |
| Alw26I | GTCTC | 1 cut(s) | 48 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1088 |
| Ama87I | CYCGRG | 1 cut(s) | 167 |
| AoxI | GGCC | 3 cut(s) | 342, 487, 1201 |
| ApeKI | GCWGC | 5 cut(s) | 140, 809, 851, 1070, 1073 |
| ApoI | RAATTY | 4 cut(s) | 388, 498, 507, 1137 |
| AseI | ATTAAT | 1 cut(s) | 417 |
| AspS9I | GGNCC | 2 cut(s) | 343, 487 |
| AsuC2I | CCSGG | 1 cut(s) | 1417 |
| AsuHPI | GGTGA | 4 cut(s) | 140, 958, 1000, 1201 |
| AvaI | CYCGRG | 1 cut(s) | 167 |
| AxyI | CCTNAGG | 1 cut(s) | 1172 |
| BaeGI | GKGCMC | 1 cut(s) | 1048 |
| BanI | GGYRCC | 1 cut(s) | 1043 |
| BanII | GRGCYC | 1 cut(s) | 744 |
| BbrPI | CACGTG | 1 cut(s) | 217 |
| BbvI | GCAGC | 5 cut(s) | 127, 821, 863, 1057, 1060 |
| BccI | CCATC | 7 cut(s) | 290, 296, 658, 806, 919, 1127, 1231 |
| BceAI | ACGGC | 3 cut(s) | 357, 530, 683 |
| BciT130I | CCWGG | 2 cut(s) | 13, 1089 |
| BcnI | CCSGG | 1 cut(s) | 1417 |
| BcoDI | GTCTC | 1 cut(s) | 48 |
| BfaI | CTAG | 1 cut(s) | 1314 |
| BfmI | CTRYAG | 1 cut(s) | 594 |
| BfrI | CTTAAG | 1 cut(s) | 1126 |
| BglII | AGATCT | 1 cut(s) | 680 |
| BisI | GCNGC | 5 cut(s) | 141, 810, 852, 1071, 1074 |
| BlsI | GCNGC | 5 cut(s) | 142, 811, 853, 1072, 1075 |
| Bme1390I | CCNGG | 3 cut(s) | 13, 1089, 1417 |
| BmeT110I | CYCGRG | 1 cut(s) | 167 |
| BmgBI | CACGTC | 1 cut(s) | 529 |
| BmgT120I | GGNCC | 2 cut(s) | 343, 487 |
| BmiI | GGNNCC | 3 cut(s) | 345, 1045, 1320 |
| BmrFI | CCNGG | 3 cut(s) | 13, 1089, 1417 |
| BmsI | GCATC | 1 cut(s) | 1332 |
| BpuEI | CTTGAG | 2 cut(s) | 420, 1292 |
| BpuMI | CCSGG | 1 cut(s) | 1417 |
| BsaAI | YACGTR | 2 cut(s) | 217, 443 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 1416 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 594, 624 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 53 |
| Bse1I | ACTGG | 2 cut(s) | 557, 1298 |
| Bse21I | CCTNAGG | 1 cut(s) | 1172 |
| BseBI | CCWGG | 2 cut(s) | 13, 1089 |
| BseDI | CCNNGG | 2 cut(s) | 12, 1416 |
| BseGI | GGATG | 3 cut(s) | 673, 798, 1347 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BseMII | CTCAG | 3 cut(s) | 757, 930, 1186 |
| BseNI | ACTGG | 2 cut(s) | 557, 1298 |
| BseSI | GKGCMC | 1 cut(s) | 1048 |
| BseXI | GCAGC | 5 cut(s) | 127, 821, 863, 1057, 1060 |
| BsgI | GTGCAG | 2 cut(s) | 798, 870 |
| Bsh1236I | CGCG | 1 cut(s) | 775 |
| BshFI | GGCC | 3 cut(s) | 344, 489, 1203 |
| BshNI | GGYRCC | 1 cut(s) | 1043 |
| BsiHKCI | CYCGRG | 1 cut(s) | 167 |
| BsiSI | CCGG | 1 cut(s) | 1416 |
| BslFI | GGGAC | 1 cut(s) | 217 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BsmAI | GTCTC | 1 cut(s) | 48 |
| BsmBI | CGTCTC | 1 cut(s) | 48 |
| BsmFI | GGGAC | 1 cut(s) | 217 |
| BsmI | GAATGC | 2 cut(s) | 142, 766 |
| BsnI | GGCC | 3 cut(s) | 344, 489, 1203 |
| BsoBI | CYCGRG | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 2 cut(s) | 744, 1048 |
| Bsp143I | GATC | 2 cut(s) | 157, 680 |
| BspACI | CCGC | 1 cut(s) | 198 |
| BspANI | GGCC | 3 cut(s) | 344, 489, 1203 |
| BspCNI | CTCAG | 3 cut(s) | 756, 931, 1185 |
| BspFNI | CGCG | 1 cut(s) | 775 |
| BspLI | GGNNCC | 3 cut(s) | 345, 1045, 1320 |
| BspQI | GCTCTTC | 1 cut(s) | 216 |
| BspT107I | GGYRCC | 1 cut(s) | 1043 |
| BspTI | CTTAAG | 1 cut(s) | 1126 |
| BsrI | ACTGG | 2 cut(s) | 557, 1298 |
| BssECI | CCNNGG | 2 cut(s) | 12, 1416 |
| BssMI | GATC | 2 cut(s) | 157, 680 |
| Bst2UI | CCWGG | 2 cut(s) | 13, 1089 |
| Bst4CI | ACNGT | 4 cut(s) | 428, 450, 1036, 1084 |
| Bst6I | CTCTTC | 3 cut(s) | 216, 246, 996 |
| BstAFI | CTTAAG | 1 cut(s) | 1126 |
| BstBAI | YACGTR | 2 cut(s) | 217, 443 |
| BstC8I | GCNNGC | 4 cut(s) | 358, 362, 777, 1311 |
| BstDEI | CTNAG | 5 cut(s) | 35, 743, 919, 939, 1172 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 51 |
| BstF5I | GGATG | 3 cut(s) | 673, 798, 1347 |
| BstFNI | CGCG | 1 cut(s) | 775 |
| BstKTI | GATC | 2 cut(s) | 160, 683 |
| BstMAI | GTCTC | 1 cut(s) | 48 |
| BstMBI | GATC | 2 cut(s) | 157, 680 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 871 |
| BstNI | CCWGG | 2 cut(s) | 13, 1089 |
| BstNSI | RCATGY | 2 cut(s) | 364, 809 |
| BstSCI | CCNGG | 3 cut(s) | 11, 1087, 1415 |
| BstSFI | CTRYAG | 1 cut(s) | 594 |
| BstSLI | GKGCMC | 1 cut(s) | 1048 |
| BstSNI | TACGTA | 1 cut(s) | 443 |
| BstUI | CGCG | 1 cut(s) | 775 |
| BstV1I | GCAGC | 5 cut(s) | 127, 821, 863, 1057, 1060 |
| BstX2I | RGATCY | 1 cut(s) | 680 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1237 |
| BstYI | RGATCY | 1 cut(s) | 680 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1172 |
| BsuRI | GGCC | 3 cut(s) | 344, 489, 1203 |
| BtgZI | GCGATG | 1 cut(s) | 315 |
| BtrI | CACGTC | 1 cut(s) | 529 |
| BtsCI | GGATG | 3 cut(s) | 673, 798, 1347 |
| BtsIMutI | CAGTG | 1 cut(s) | 751 |
| Cac8I | GCNNGC | 4 cut(s) | 358, 362, 777, 1311 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1088 |
| Cfr13I | GGNCC | 2 cut(s) | 343, 487 |
| Csp6I | GTAC | 5 cut(s) | 109, 374, 440, 444, 905 |
| CviAII | CATG | 8 cut(s) | 98, 361, 491, 520, 806, 1234, 1284, 1372 |
| CviQI | GTAC | 5 cut(s) | 109, 374, 440, 444, 905 |
| DdeI | CTNAG | 5 cut(s) | 35, 743, 919, 939, 1172 |
| DpnI | GATC | 2 cut(s) | 159, 682 |
| DpnII | GATC | 2 cut(s) | 157, 680 |
| DraIII | CACNNNGTG | 1 cut(s) | 247 |
| Eam1104I | CTCTTC | 3 cut(s) | 216, 246, 996 |
| EarI | CTCTTC | 3 cut(s) | 216, 246, 996 |
| Eco105I | TACGTA | 1 cut(s) | 443 |
| Eco147I | AGGCCT | 1 cut(s) | 1203 |
| Eco24I | GRGCYC | 1 cut(s) | 744 |
| Eco57I | CTGAAG | 1 cut(s) | 69 |
| Eco72I | CACGTG | 1 cut(s) | 217 |
| Eco81I | CCTNAGG | 1 cut(s) | 1172 |
| Eco88I | CYCGRG | 1 cut(s) | 167 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 51 |
| EcoRI | GAATTC | 1 cut(s) | 498 |
| EcoRII | CCWGG | 2 cut(s) | 11, 1087 |
| EcoT22I | ATGCAT | 1 cut(s) | 366 |
| EcoT38I | GRGCYC | 1 cut(s) | 744 |
| Esp3I | CGTCTC | 1 cut(s) | 48 |
| FaeI | CATG | 8 cut(s) | 101, 364, 494, 523, 809, 1237, 1287, 1375 |
| FaqI | GGGAC | 1 cut(s) | 217 |
| FatI | CATG | 8 cut(s) | 97, 360, 490, 519, 805, 1233, 1283, 1371 |
| Fnu4HI | GCNGC | 5 cut(s) | 141, 810, 852, 1071, 1074 |
| FokI | GGATG | 3 cut(s) | 680, 785, 1354 |
| FriOI | GRGCYC | 1 cut(s) | 744 |
| Fsp4HI | GCNGC | 5 cut(s) | 141, 810, 852, 1071, 1074 |
| FspBI | CTAG | 1 cut(s) | 1314 |
| GluI | GCNGC | 5 cut(s) | 141, 810, 852, 1071, 1074 |
| HaeIII | GGCC | 3 cut(s) | 344, 489, 1203 |
| HapII | CCGG | 1 cut(s) | 1416 |
| Hin1II | CATG | 8 cut(s) | 101, 364, 494, 523, 809, 1237, 1287, 1375 |
| HinfI | GANTC | 6 cut(s) | 170, 404, 640, 648, 1004, 1280 |
| HpaII | CCGG | 1 cut(s) | 1416 |
| HphI | GGTGA | 4 cut(s) | 140, 958, 1000, 1201 |
| Hpy166II | GTNNAC | 2 cut(s) | 446, 1377 |
| Hpy188I | TCNGA | 1 cut(s) | 590 |
| Hpy188III | TCNNGA | 6 cut(s) | 47, 548, 713, 825, 1103, 1361 |
| Hpy8I | GTNNAC | 2 cut(s) | 446, 1377 |
| HpyAV | CCTTC | 5 cut(s) | 47, 51, 593, 985, 989 |
| HpyCH4III | ACNGT | 4 cut(s) | 428, 450, 1036, 1084 |
| HpyCH4IV | ACGT | 3 cut(s) | 216, 442, 528 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 871 |
| HpyF3I | CTNAG | 5 cut(s) | 35, 743, 919, 939, 1172 |
| HpySE526I | ACGT | 3 cut(s) | 216, 442, 528 |
| Hsp92II | CATG | 8 cut(s) | 101, 364, 494, 523, 809, 1237, 1287, 1375 |
| Kzo9I | GATC | 2 cut(s) | 157, 680 |
| LguI | GCTCTTC | 1 cut(s) | 216 |
| Lsp1109I | GCAGC | 5 cut(s) | 127, 821, 863, 1057, 1060 |
| LweI | GCATC | 1 cut(s) | 1332 |
| MaeI | CTAG | 1 cut(s) | 1314 |
| MaeII | ACGT | 3 cut(s) | 216, 442, 528 |
| MaeIII | GTNAC | 7 cut(s) | 171, 237, 395, 524, 934, 1054, 1146 |
| MalI | GATC | 2 cut(s) | 159, 682 |
| MboI | GATC | 2 cut(s) | 157, 680 |
| MflI | RGATCY | 1 cut(s) | 680 |
| MhlI | GDGCHC | 2 cut(s) | 744, 1048 |
| MluCI | AATT | 8 cut(s) | 288, 388, 414, 498, 507, 983, 1137, 1346 |
| MluI | ACGCGT | 1 cut(s) | 773 |
| MlyI | GAGTC | 2 cut(s) | 179, 1013 |
| Mph1103I | ATGCAT | 1 cut(s) | 366 |
| MseI | TTAA | 6 cut(s) | 417, 621, 726, 770, 834, 1127 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1190, 1235, 1370 |
| MspCI | CTTAAG | 1 cut(s) | 1126 |
| MspI | CCGG | 1 cut(s) | 1416 |
| MspR9I | CCNGG | 3 cut(s) | 13, 1089, 1417 |
| Mva1269I | GAATGC | 2 cut(s) | 142, 766 |
| MvaI | CCWGG | 2 cut(s) | 13, 1089 |
| MvnI | CGCG | 1 cut(s) | 775 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 871 |
| NciI | CCSGG | 1 cut(s) | 1417 |
| NdeII | GATC | 2 cut(s) | 157, 680 |
| NlaIII | CATG | 8 cut(s) | 101, 364, 494, 523, 809, 1237, 1287, 1375 |
| NlaIV | GGNNCC | 3 cut(s) | 345, 1045, 1320 |
| NmuCI | GTSAC | 3 cut(s) | 171, 524, 1146 |
| NsiI | ATGCAT | 1 cut(s) | 366 |
| NspI | RCATGY | 2 cut(s) | 364, 809 |
| PaeI | GCATGC | 1 cut(s) | 364 |
| PceI | AGGCCT | 1 cut(s) | 1203 |
| PciSI | GCTCTTC | 1 cut(s) | 216 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 222 |
| PctI | GAATGC | 2 cut(s) | 142, 766 |
| PfeI | GAWTC | 4 cut(s) | 404, 640, 648, 1280 |
| PkrI | GCNGC | 5 cut(s) | 142, 811, 853, 1072, 1075 |
| PleI | GAGTC | 2 cut(s) | 178, 1012 |
| PmaCI | CACGTG | 1 cut(s) | 217 |
| PmlI | CACGTG | 1 cut(s) | 217 |
| PpsI | GAGTC | 2 cut(s) | 178, 1012 |
| Ppu21I | YACGTR | 2 cut(s) | 217, 443 |
| PshBI | ATTAAT | 1 cut(s) | 417 |
| Psp6I | CCWGG | 2 cut(s) | 11, 1087 |
| PspCI | CACGTG | 1 cut(s) | 217 |
| PspGI | CCWGG | 2 cut(s) | 11, 1087 |
| PspN4I | GGNNCC | 3 cut(s) | 345, 1045, 1320 |
| PspPI | GGNCC | 2 cut(s) | 343, 487 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 436, 468 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1088 |
| PsuI | RGATCY | 1 cut(s) | 680 |
| RsaI | GTAC | 5 cut(s) | 110, 375, 441, 445, 906 |
| RsaNI | GTAC | 5 cut(s) | 109, 374, 440, 444, 905 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1190, 1235, 1370 |
| SapI | GCTCTTC | 1 cut(s) | 216 |
| SaqAI | TTAA | 6 cut(s) | 417, 621, 726, 770, 834, 1127 |
| SatI | GCNGC | 5 cut(s) | 141, 810, 852, 1071, 1074 |
| Sau3AI | GATC | 2 cut(s) | 157, 680 |
| Sau96I | GGNCC | 2 cut(s) | 343, 487 |
| SchI | GAGTC | 2 cut(s) | 179, 1013 |
| ScrFI | CCNGG | 3 cut(s) | 13, 1089, 1417 |
| SduI | GDGCHC | 2 cut(s) | 744, 1048 |
| SfaNI | GCATC | 1 cut(s) | 1332 |
| SfcI | CTRYAG | 1 cut(s) | 594 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1190, 1235, 1370 |
| SmlI | CTYRAG | 3 cut(s) | 435, 1126, 1271 |
| SmoI | CTYRAG | 3 cut(s) | 435, 1126, 1271 |
| SnaBI | TACGTA | 1 cut(s) | 443 |
| SphI | GCATGC | 1 cut(s) | 364 |
| Sse9I | AATT | 8 cut(s) | 288, 388, 414, 498, 507, 983, 1137, 1346 |
| SseBI | AGGCCT | 1 cut(s) | 1203 |
| SsiI | CCGC | 1 cut(s) | 198 |
| SspI | AATATT | 2 cut(s) | 421, 1395 |
| SspMI | CTAG | 1 cut(s) | 1314 |
| StuI | AGGCCT | 1 cut(s) | 1203 |
| StyD4I | CCNGG | 3 cut(s) | 11, 1087, 1415 |
| TaaI | ACNGT | 4 cut(s) | 428, 450, 1036, 1084 |
| TaiI | ACGT | 3 cut(s) | 219, 445, 531 |
| TaqI | TCGA | 2 cut(s) | 160, 225 |
| TaqII | GACCGA | 1 cut(s) | 510 |
| TasI | AATT | 8 cut(s) | 288, 388, 414, 498, 507, 983, 1137, 1346 |
| TfiI | GAWTC | 4 cut(s) | 404, 640, 648, 1280 |
| Tru1I | TTAA | 6 cut(s) | 417, 621, 726, 770, 834, 1127 |
| Tru9I | TTAA | 6 cut(s) | 417, 621, 726, 770, 834, 1127 |
| TscAI | CASTG | 1 cut(s) | 751 |
| TseFI | GTSAC | 3 cut(s) | 171, 524, 1146 |
| TseI | GCWGC | 5 cut(s) | 140, 809, 851, 1070, 1073 |
| Tsp45I | GTSAC | 3 cut(s) | 171, 524, 1146 |
| TspDTI | ATGAA | 4 cut(s) | 180, 453, 684, 1360 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 751 |
| Vha464I | CTTAAG | 1 cut(s) | 1126 |
| VspI | ATTAAT | 1 cut(s) | 417 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 51 |
| XapI | RAATTY | 4 cut(s) | 388, 498, 507, 1137 |
| XceI | RCATGY | 2 cut(s) | 364, 809 |
| XspI | CTAG | 1 cut(s) | 1314 |
| Zsp2I | ATGCAT | 1 cut(s) | 366 |