protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 233 - 346 | 3.7e-22 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 279, 1148 |
| AccII | CGCG | 2 cut(s) | 71, 922 |
| AciI | CCGC | 2 cut(s) | 542, 981 |
| AclI | AACGTT | 1 cut(s) | 8 |
| AclWI | GGATC | 1 cut(s) | 175 |
| AcsI | RAATTY | 1 cut(s) | 201 |
| AcuI | CTGAAG | 2 cut(s) | 873, 951 |
| AfaI | GTAC | 2 cut(s) | 581, 877 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 614 |
| AgsI | TTSAA | 3 cut(s) | 238, 395, 1144 |
| AjiI | CACGTC | 1 cut(s) | 197 |
| AjnI | CCWGG | 1 cut(s) | 784 |
| AluBI | AGCT | 1 cut(s) | 529 |
| AluI | AGCT | 1 cut(s) | 529 |
| Alw26I | GTCTC | 1 cut(s) | 127 |
| AlwI | GGATC | 1 cut(s) | 175 |
| Ama87I | CYCGRG | 2 cut(s) | 613, 686 |
| AoxI | GGCC | 3 cut(s) | 259, 355, 973 |
| ApeKI | GCWGC | 4 cut(s) | 548, 716, 767, 1085 |
| ApoI | RAATTY | 1 cut(s) | 201 |
| AsuC2I | CCSGG | 1 cut(s) | 499 |
| AvaI | CYCGRG | 2 cut(s) | 613, 686 |
| BbvI | GCAGC | 4 cut(s) | 560, 728, 754, 1072 |
| BccI | CCATC | 6 cut(s) | 136, 251, 632, 686, 1003, 1004 |
| BceAI | ACGGC | 2 cut(s) | 175, 384 |
| BciT130I | CCWGG | 1 cut(s) | 786 |
| BcnI | CCSGG | 1 cut(s) | 499 |
| BcoDI | GTCTC | 1 cut(s) | 127 |
| BfaI | CTAG | 2 cut(s) | 359, 971 |
| BfmI | CTRYAG | 1 cut(s) | 768 |
| BglII | AGATCT | 1 cut(s) | 62 |
| BisI | GCNGC | 4 cut(s) | 549, 717, 768, 1086 |
| BlsI | GCNGC | 4 cut(s) | 550, 718, 769, 1087 |
| Bme1390I | CCNGG | 2 cut(s) | 499, 786 |
| BmeT110I | CYCGRG | 2 cut(s) | 613, 686 |
| BmgBI | CACGTC | 1 cut(s) | 197 |
| BmiI | GGNNCC | 2 cut(s) | 606, 619 |
| BmrFI | CCNGG | 2 cut(s) | 499, 786 |
| BmrI | ACTGGG | 1 cut(s) | 61 |
| BmsI | GCATC | 3 cut(s) | 850, 918, 1104 |
| BmuI | ACTGGG | 1 cut(s) | 61 |
| BpuMI | CCSGG | 1 cut(s) | 499 |
| BsaBI | GATNNNNATC | 1 cut(s) | 995 |
| BsaJI | CCNNGG | 1 cut(s) | 666 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 12, 42 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 614 |
| Bse1I | ACTGG | 1 cut(s) | 56 |
| Bse3DI | GCAATG | 1 cut(s) | 581 |
| Bse8I | GATNNNNATC | 1 cut(s) | 995 |
| BseBI | CCWGG | 1 cut(s) | 786 |
| BseDI | CCNNGG | 1 cut(s) | 666 |
| BseGI | GGATG | 7 cut(s) | 262, 507, 697, 711, 865, 909, 1119 |
| BseJI | GATNNNNATC | 1 cut(s) | 995 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BseMI | GCAATG | 1 cut(s) | 581 |
| BseMII | CTCAG | 1 cut(s) | 50 |
| BseNI | ACTGG | 1 cut(s) | 56 |
| BseRI | GAGGAG | 1 cut(s) | 54 |
| BseXI | GCAGC | 4 cut(s) | 560, 728, 754, 1072 |
| BsgI | GTGCAG | 2 cut(s) | 567, 735 |
| Bsh1236I | CGCG | 2 cut(s) | 71, 922 |
| BshFI | GGCC | 3 cut(s) | 261, 357, 975 |
| BsiHKCI | CYCGRG | 2 cut(s) | 613, 686 |
| BsiSI | CCGG | 2 cut(s) | 474, 498 |
| BslFI | GGGAC | 1 cut(s) | 62 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BsmAI | GTCTC | 1 cut(s) | 127 |
| BsmFI | GGGAC | 1 cut(s) | 62 |
| BsmI | GAATGC | 2 cut(s) | 162, 401 |
| BsnI | GGCC | 3 cut(s) | 261, 357, 975 |
| BsoBI | CYCGRG | 2 cut(s) | 613, 686 |
| Bsp143I | GATC | 4 cut(s) | 62, 180, 532, 990 |
| BspACI | CCGC | 2 cut(s) | 542, 981 |
| BspANI | GGCC | 3 cut(s) | 261, 357, 975 |
| BspCNI | CTCAG | 1 cut(s) | 51 |
| BspFNI | CGCG | 2 cut(s) | 71, 922 |
| BspLI | GGNNCC | 2 cut(s) | 606, 619 |
| BspMAI | CTGCAG | 1 cut(s) | 772 |
| BspPI | GGATC | 1 cut(s) | 175 |
| BsrDI | GCAATG | 1 cut(s) | 581 |
| BsrI | ACTGG | 1 cut(s) | 56 |
| BssECI | CCNNGG | 1 cut(s) | 666 |
| BssMI | GATC | 4 cut(s) | 62, 180, 532, 990 |
| BssNAI | GTATAC | 1 cut(s) | 280 |
| Bst1107I | GTATAC | 1 cut(s) | 280 |
| Bst2UI | CCWGG | 1 cut(s) | 786 |
| Bst4CI | ACNGT | 5 cut(s) | 234, 284, 733, 781, 1188 |
| BstC8I | GCNNGC | 1 cut(s) | 520 |
| BstDEI | CTNAG | 1 cut(s) | 59 |
| BstF5I | GGATG | 7 cut(s) | 262, 507, 697, 711, 865, 909, 1119 |
| BstFNI | CGCG | 2 cut(s) | 71, 922 |
| BstKTI | GATC | 4 cut(s) | 65, 183, 535, 993 |
| BstMAI | GTCTC | 1 cut(s) | 127 |
| BstMBI | GATC | 4 cut(s) | 62, 180, 532, 990 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 548, 890 |
| BstNI | CCWGG | 1 cut(s) | 786 |
| BstNSI | RCATGY | 1 cut(s) | 217 |
| BstSCI | CCNGG | 2 cut(s) | 497, 784 |
| BstSFI | CTRYAG | 1 cut(s) | 768 |
| BstUI | CGCG | 2 cut(s) | 71, 922 |
| BstV1I | GCAGC | 4 cut(s) | 560, 728, 754, 1072 |
| BstX2I | RGATCY | 1 cut(s) | 62 |
| BstYI | RGATCY | 1 cut(s) | 62 |
| BstZ17I | GTATAC | 1 cut(s) | 280 |
| BsuRI | GGCC | 3 cut(s) | 261, 357, 975 |
| BtgZI | GCGATG | 2 cut(s) | 903, 982 |
| BtrI | CACGTC | 1 cut(s) | 197 |
| BtsCI | GGATG | 7 cut(s) | 262, 507, 697, 711, 865, 909, 1119 |
| BtsIMutI | CAGTG | 2 cut(s) | 289, 1193 |
| Cac8I | GCNNGC | 1 cut(s) | 520 |
| Csp6I | GTAC | 2 cut(s) | 580, 876 |
| CviAII | CATG | 5 cut(s) | 185, 214, 760, 1006, 1039 |
| CviJI | RGCY | 9 cut(s) | 58, 261, 332, 357, 420, 529, 551, 620, 975 |
| CviKI_1 | RGCY | 9 cut(s) | 58, 261, 332, 357, 420, 529, 551, 620, 975 |
| CviQI | GTAC | 2 cut(s) | 580, 876 |
| DdeI | CTNAG | 1 cut(s) | 59 |
| DpnI | GATC | 4 cut(s) | 64, 182, 534, 992 |
| DpnII | GATC | 4 cut(s) | 62, 180, 532, 990 |
| DraI | TTTAAA | 1 cut(s) | 630 |
| Eco147I | AGGCCT | 2 cut(s) | 357, 975 |
| Eco57I | CTGAAG | 2 cut(s) | 873, 951 |
| Eco88I | CYCGRG | 2 cut(s) | 613, 686 |
| EcoRII | CCWGG | 1 cut(s) | 784 |
| FaeI | CATG | 5 cut(s) | 188, 217, 763, 1009, 1042 |
| FaqI | GGGAC | 1 cut(s) | 62 |
| FatI | CATG | 5 cut(s) | 184, 213, 759, 1005, 1038 |
| FauI | CCCGC | 1 cut(s) | 535 |
| FblI | GTMKAC | 2 cut(s) | 279, 1148 |
| Fnu4HI | GCNGC | 4 cut(s) | 549, 717, 768, 1086 |
| FokI | GGATG | 7 cut(s) | 269, 514, 704, 718, 872, 896, 1126 |
| Fsp4HI | GCNGC | 4 cut(s) | 549, 717, 768, 1086 |
| FspBI | CTAG | 2 cut(s) | 359, 971 |
| GluI | GCNGC | 4 cut(s) | 549, 717, 768, 1086 |
| HaeIII | GGCC | 3 cut(s) | 261, 357, 975 |
| HapII | CCGG | 2 cut(s) | 474, 498 |
| Hin1II | CATG | 5 cut(s) | 188, 217, 763, 1009, 1042 |
| HindIII | AAGCTT | 1 cut(s) | 527 |
| HinfI | GANTC | 1 cut(s) | 153 |
| HpaII | CCGG | 2 cut(s) | 474, 498 |
| Hpy166II | GTNNAC | 3 cut(s) | 280, 1149, 1160 |
| Hpy188I | TCNGA | 3 cut(s) | 142, 353, 859 |
| Hpy188III | TCNNGA | 6 cut(s) | 132, 167, 404, 615, 988, 1046 |
| Hpy8I | GTNNAC | 3 cut(s) | 280, 1149, 1160 |
| HpyAV | CCTTC | 4 cut(s) | 11, 75, 115, 562 |
| HpyCH4III | ACNGT | 5 cut(s) | 234, 284, 733, 781, 1188 |
| HpyCH4IV | ACGT | 2 cut(s) | 8, 196 |
| HpyCH4V | TGCA | 7 cut(s) | 213, 548, 562, 716, 770, 884, 1117 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 548, 890 |
| HpyF3I | CTNAG | 1 cut(s) | 59 |
| HpySE526I | ACGT | 2 cut(s) | 8, 196 |
| Hsp92II | CATG | 5 cut(s) | 188, 217, 763, 1009, 1042 |
| Kzo9I | GATC | 4 cut(s) | 62, 180, 532, 990 |
| LmnI | GCTCC | 1 cut(s) | 617 |
| LpnPI | CCDG | 9 cut(s) | 37, 346, 351, 487, 511, 771, 792, 798, 1031 |
| Lsp1109I | GCAGC | 4 cut(s) | 560, 728, 754, 1072 |
| LweI | GCATC | 3 cut(s) | 850, 918, 1104 |
| MaeI | CTAG | 2 cut(s) | 359, 971 |
| MaeII | ACGT | 2 cut(s) | 8, 196 |
| MaeIII | GTNAC | 2 cut(s) | 192, 218 |
| MalI | GATC | 4 cut(s) | 64, 182, 534, 992 |
| MboI | GATC | 4 cut(s) | 62, 180, 532, 990 |
| MboII | GAAGA | 4 cut(s) | 101, 104, 257, 944 |
| MflI | RGATCY | 1 cut(s) | 62 |
| MluCI | AATT | 7 cut(s) | 176, 201, 341, 469, 656, 680, 1052 |
| MseI | TTAA | 4 cut(s) | 629, 644, 824, 945 |
| MslI | CAYNNNNRTG | 1 cut(s) | 962 |
| MspI | CCGG | 2 cut(s) | 474, 498 |
| MspR9I | CCNGG | 2 cut(s) | 499, 786 |
| Mva1269I | GAATGC | 2 cut(s) | 162, 401 |
| MvaI | CCWGG | 1 cut(s) | 786 |
| MvnI | CGCG | 2 cut(s) | 71, 922 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 548, 890 |
| NciI | CCSGG | 1 cut(s) | 499 |
| NdeII | GATC | 4 cut(s) | 62, 180, 532, 990 |
| NlaIII | CATG | 5 cut(s) | 188, 217, 763, 1009, 1042 |
| NlaIV | GGNNCC | 2 cut(s) | 606, 619 |
| NmuCI | GTSAC | 2 cut(s) | 192, 218 |
| NspI | RCATGY | 1 cut(s) | 217 |
| PaeR7I | CTCGAG | 1 cut(s) | 686 |
| PceI | AGGCCT | 2 cut(s) | 357, 975 |
| PctI | GAATGC | 2 cut(s) | 162, 401 |
| PfeI | GAWTC | 1 cut(s) | 153 |
| PkrI | GCNGC | 4 cut(s) | 550, 718, 769, 1087 |
| Psp1406I | AACGTT | 1 cut(s) | 8 |
| Psp6I | CCWGG | 1 cut(s) | 784 |
| PspGI | CCWGG | 1 cut(s) | 784 |
| PspN4I | GGNNCC | 2 cut(s) | 606, 619 |
| PspXI | VCTCGAGB | 1 cut(s) | 686 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 765, 797 |
| PstI | CTGCAG | 1 cut(s) | 772 |
| PsuI | RGATCY | 1 cut(s) | 62 |
| RsaI | GTAC | 2 cut(s) | 581, 877 |
| RsaNI | GTAC | 2 cut(s) | 580, 876 |
| RseI | CAYNNNNRTG | 1 cut(s) | 962 |
| SaqAI | TTAA | 4 cut(s) | 629, 644, 824, 945 |
| SatI | GCNGC | 4 cut(s) | 549, 717, 768, 1086 |
| Sau3AI | GATC | 4 cut(s) | 62, 180, 532, 990 |
| ScrFI | CCNGG | 2 cut(s) | 499, 786 |
| SetI | ASST | 7 cut(s) | 11, 199, 312, 531, 591, 837, 856 |
| SfaNI | GCATC | 3 cut(s) | 850, 918, 1104 |
| SfcI | CTRYAG | 1 cut(s) | 768 |
| Sfr274I | CTCGAG | 1 cut(s) | 686 |
| SlaI | CTCGAG | 1 cut(s) | 686 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 962 |
| SmlI | CTYRAG | 1 cut(s) | 686 |
| SmoI | CTYRAG | 1 cut(s) | 686 |
| Sse9I | AATT | 7 cut(s) | 176, 201, 341, 469, 656, 680, 1052 |
| SseBI | AGGCCT | 2 cut(s) | 357, 975 |
| SsiI | CCGC | 2 cut(s) | 542, 981 |
| SspMI | CTAG | 2 cut(s) | 359, 971 |
| StuI | AGGCCT | 2 cut(s) | 357, 975 |
| StyD4I | CCNGG | 2 cut(s) | 497, 784 |
| TaaI | ACNGT | 5 cut(s) | 234, 284, 733, 781, 1188 |
| TaiI | ACGT | 2 cut(s) | 11, 199 |
| TaqI | TCGA | 3 cut(s) | 131, 687, 1170 |
| TaqII | GACCGA | 1 cut(s) | 180 |
| TasI | AATT | 7 cut(s) | 176, 201, 341, 469, 656, 680, 1052 |
| TatI | WGTACW | 1 cut(s) | 875 |
| TfiI | GAWTC | 1 cut(s) | 153 |
| Tru1I | TTAA | 4 cut(s) | 629, 644, 824, 945 |
| Tru9I | TTAA | 4 cut(s) | 629, 644, 824, 945 |
| TscAI | CASTG | 2 cut(s) | 289, 1193 |
| TseFI | GTSAC | 2 cut(s) | 192, 218 |
| TseI | GCWGC | 4 cut(s) | 548, 716, 767, 1085 |
| Tsp45I | GTSAC | 2 cut(s) | 192, 218 |
| TspDTI | ATGAA | 6 cut(s) | 258, 285, 371, 1011, 1024, 1063 |
| TspGWI | ACGGA | 3 cut(s) | 51, 381, 843 |
| TspRI | CASTG | 2 cut(s) | 289, 1193 |
| XapI | RAATTY | 1 cut(s) | 201 |
| XceI | RCATGY | 1 cut(s) | 217 |
| XhoI | CTCGAG | 1 cut(s) | 686 |
| XmiI | GTMKAC | 2 cut(s) | 279, 1148 |
| XspI | CTAG | 2 cut(s) | 359, 971 |