Rh2BG571700

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000027
Physical Location & Seq
Reverse (-)
78770664 .. 78779225
8562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG571700.1

Sequence Viewer

Length: 2355 bp
ATGGCAGCTAGAGTTGTCCCTAGTGCAAATACTATTCCTGAAGTTCTAAACCTATACAACTATGAAGATTGGAGTATTCGGGTCGAAACCTACTTAATTTCTGAGGGTCTTTGGGACGTTGTCGAAGCCACAGCTGAAACTCTCCCTGGTGAAACTGAATATATGGATTGGAGGATGAAGAACGCCAAGGCTCTTCATGCAATCCAAAACTCATGTAGGACTGATGTATTCGGTTTTATCCGTGACATTAGGATGGCCAAGGATGCGTGGGAGACTTTGGCAAAACGGTTGAAGCCGAAAAACATAGCTATCGAGGGCAGGACAGCGACACTAGTCCCTAGTGTAATGATTTATCTTGAAGCTCTTAACCAAGACAACTATACGCACTGGAGCTTTTGGGTGAAAACATACTTGCTGGCTGAAGATTTGTGGGACGTTGTCAAAGGCACAAATAAACTTCCAAAACTAGAAGACGGGGAAGGGGAAGCTGAATTCATGGCTTGGCTGAAAAATAATGCCAGGGCCTTGCATGTTATCATGATATTTTGCGGGGAGGATGCTAAGTCTTCTATTAGTGACATTGAGAGGGCGAAAGATGCCTGGCATACTTTGGCAGAAAAGTTCGAACCTCCTGAAATTTTAGCAACTCCAGTTGACTCGAACGACGACACCGGCTCAAATGATGGTAATGCTGACTTGAAAATGGAAGTGGTTGAAGCATATGAGAGTGAGACCTATAGACCTTTCTTCGGTGGTGTGCTGTGCGGGCATTGGGAGGATGTAAAAAAGTTCATAAAACAACATCCAGAGGCAGTAAGAGCTGGACAAAAGAAGAGTGGCAAGACAGCTCTTCACTATGCAATCCAGTTTAGCGACGTGGGAGGTGTAAAAGAGTTGTTGCCGTTTATGAAAAAGAAAGATTTGGAAATACTAGACGGTCTTGGACGTACTGCTCTCTCTATGGCTTTACGAAATACGGATACAAATGATGCGACGGAAATCGTCAAGTGCATAGTTGAGAAGAACAAGACACTACTCCTTCGTGTTGTCGATCCTTTTGCCAATATTATTCCGCTCCTGAATGCTCTGACTTTGGACAAACCAAAAATGGCTCGTTATCTTTATTCTGTTACTCCACTCGGAAAGCTGAAGAGTAGGGACGGCGCTGAGCTTGTTTCCACATGTTTGCGATTGAAACATTTAGATATTGCGTTGGACTTACTACAGTGTTTTCCAAACTTGGCCATTGCTAAAGACCATTCTGGTATATACATACCACCTACACCTTCGTATACTGGTCACGTTATTATAGATATTCAAATAGAAGAGAACGATCAAGGCAATTGGAAGCATCCCATTCGCAAAGGAATCAATGGTATATATCAAATGAAATTGCTCCATGTCCAGATCCTGGAAATTCTGATTCGCATGTGCACAGTGTTAATGGAAGATAATCTCAACTATATGCAACATAAATATGTTGAAAAAGCACTCTTCCAAGCAGTAGAACGAGGACATGCTCCAATCATCCATCACGTATTGAGATCTTATCCAAGGTTTCTTGCGGTCACTAATGAACATGAAAAGACCGTCTTTCAATTTGCTGCTGAGCATCGTCAAGACGAAATCTTTGATCAGATAAATATGTTTCGTGAACAAAGGAGGGTAGAAATTGTAGGCAGAAAAGATAAGTTTGGGAATAACATGCTGCATGTGGTAGGAAAGTTGTCTCCATTAACAAATATTGCTCATATTCGAGGTGCAGCTTTGCAAATGCAGAACGAACTACAATGGTTCAAGGGTTTTCGTTGGGATGAAATGCAGAAGGTGGAGCGCATGGTAAGTCCCAAGGATCTTGATTGTATAAATTCTGATGGTCTCACACCCCGTGAGGTATTTACTATGAACCACATAAGTTTGGTGGAGGCGGGAGAAAAGTCAATGAAAGAAACTGCAAAATCTTCTTCTTTCGTAGGTGCTCTTGTCATTACCATTATGTTCGCTGCAGCAGTGACAGTTCCTGGTGGAATTAAGGGGGACACAGAAGAAGATTTCTTCATATCCTTGCCCACAAAATTGATAATTGGCCTTTTTACCCTTTTTCTATCTATCGCGGGCATGATGATCGCCTTTTCTTCTGCCATTTTCATCATGTTTCCGGAAAATATAGCGATCGTTATTCCATCTATTGTGCTAGCTTGTGTTCCAGTTGCCTCATTCCTATGGATGGAAGGAAACTTGCTCATTGCGATCATTCTTTCTACTTATGGAAGGAAACTAGCTTATGTTCACTTAACCTACCAGTGGGCTCGGAGGATTTACGGGGGGCTTAAGAGGTTTTGCTGGAGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

784

Amino Acids

88.9

Weight (kDa)

6.37

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 20 - 42 1e-06 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 29 - 96 1.4e-07 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 135 - 209 3.3e-08 gag-polypeptide of LTR copia-type
Ank_2 PF12796 257 - 342 3.9e-06 Ankyrin repeats (3 copies)
PGG PF13962 646 - 681 8.9e-06 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1411
AccBSI CCGCTC 1 cut(s) 1075
AccI GTMKAC 1 cut(s) 1292
AccII CGCG 1 cut(s) 2114
AccIII TCCGGA 1 cut(s) 2158
AciI CCGC 6 cut(s) 549, 765, 1073, 1565, 1928, 2114
AclWI GGATC 3 cut(s) 1046, 1402, 1860
AcoI YGGCCR 2 cut(s) 255, 1242
AcsI RAATTY 4 cut(s) 491, 636, 1416, 1867
AcuI CTGAAG 3 cut(s) 60, 441, 1169
AdeI CACNNNGTG 1 cut(s) 1889
AfaI GTAC 1 cut(s) 949
AfiI CCNNNNNNNGG 4 cut(s) 749, 1411, 2227, 2304
AflII CTTAAG 1 cut(s) 2330
AflIII ACRYGT 1 cut(s) 1181
AgsI TTSAA 9 cut(s) 292, 359, 700, 716, 1195, 1319, 1484, 1598, 1798
AhlI ACTAGT 1 cut(s) 331
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 5 cut(s) 145, 518, 599, 1410, 2020
Alw21I GWGCWC 2 cut(s) 1436, 1981
Alw26I GTCTC 4 cut(s) 266, 725, 1734, 1883
Alw44I GTGCAC 1 cut(s) 1432
AlwI GGATC 3 cut(s) 1046, 1402, 1860
AlwNI CAGNNNCTG 2 cut(s) 1411, 2021
Aor13HI TCCGGA 1 cut(s) 2158
AoxI GGCC 4 cut(s) 255, 522, 1242, 2086
ApaLI GTGCAC 1 cut(s) 1432
ApeKI GCWGC 6 cut(s) 5, 1604, 1708, 1763, 2003, 2006
ApoI RAATTY 4 cut(s) 491, 636, 1416, 1867
ArsI GACNNNNNNTTYG 2 cut(s) 1613, 1645
AspLEI GCGC 2 cut(s) 1166, 1836
AspS9I GGNCC 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 161, 412
AsuII TTCGAA 1 cut(s) 624
AsuNHI GCTAGC 1 cut(s) 2194
BaeGI GKGCMC 1 cut(s) 1436
BalI TGGCCA 2 cut(s) 257, 1244
BanII GRGCYC 1 cut(s) 2311
BbsI GAAGAC 2 cut(s) 477, 558
Bbv12I GWGCWC 2 cut(s) 1436, 1981
BbvI GCAGC 6 cut(s) 17, 1591, 1695, 1775, 1990, 2018
BccI CCATC 6 cut(s) 247, 677, 1539, 1868, 2191, 2221
BceAI ACGGC 2 cut(s) 886, 1177
BcgI CGANNNNNNTGC 6 cut(s) 1040, 1074, 1340, 1374, 2107, 2141
BciT130I CCWGG 5 cut(s) 147, 520, 601, 1412, 2022
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 1633
BcoDI GTCTC 4 cut(s) 266, 725, 1734, 1883
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 8 cut(s) 9, 21, 332, 339, 467, 932, 2195, 2279
BfmI CTRYAG 3 cut(s) 736, 1223, 2004
BfoI RGCGCY 1 cut(s) 1167
BfrI CTTAAG 1 cut(s) 2330
BfuI GTATCC 1 cut(s) 973
BglII AGATCT 1 cut(s) 1544
BisI GCNGC 6 cut(s) 6, 1605, 1709, 1764, 2004, 2007
BlpI GCTNAGC 2 cut(s) 1167, 1608
BlsI GCNGC 6 cut(s) 7, 1606, 1710, 1765, 2005, 2008
Bme1390I CCNGG 5 cut(s) 147, 520, 601, 1412, 2022
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 522
BmrFI CCNGG 5 cut(s) 147, 520, 601, 1412, 2022
BmsI GCATC 6 cut(s) 253, 547, 586, 979, 1360, 1621
BmtI GCTAGC 1 cut(s) 2198
BoxI GACNNNNGTC 1 cut(s) 332
BpiI GAAGAC 2 cut(s) 477, 558
BpmI CTGGAG 2 cut(s) 409, 633
Bpu1102I GCTNAGC 2 cut(s) 1167, 1608
Bpu14I TTCGAA 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 1537
BsaI GGTCTC 2 cut(s) 725, 1883
BsaJI CCNNGG 6 cut(s) 145, 186, 258, 519, 1553, 1848
BsaWI WCCGGW 1 cut(s) 2158
Bsc4I CCNNNNNNNGG 4 cut(s) 749, 1411, 2227, 2304
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 6 cut(s) 392, 650, 865, 1300, 2207, 2302
Bse3DI GCAATG 2 cut(s) 1245, 2244
BseAI TCCGGA 1 cut(s) 2158
BseBI CCWGG 5 cut(s) 147, 520, 601, 1412, 2022
BseDI CCNNGG 6 cut(s) 145, 186, 258, 519, 1553, 1848
BseLI CCNNNNNNNGG 4 cut(s) 749, 1411, 2227, 2304
BseMI GCAATG 2 cut(s) 1245, 2244
BseMII CTCAG 3 cut(s) 93, 1158, 1599
BseNI ACTGG 6 cut(s) 392, 650, 865, 1300, 2207, 2302
BseSI GKGCMC 1 cut(s) 1436
BseXI GCAGC 6 cut(s) 17, 1591, 1695, 1775, 1990, 2018
BsgI GTGCAG 1 cut(s) 1782
Bsh1236I CGCG 1 cut(s) 2114
Bsh1285I CGRYCG 1 cut(s) 2175
BshFI GGCC 4 cut(s) 257, 524, 1244, 2088
BsiEI CGRYCG 1 cut(s) 2175
BsiHKAI GWGCWC 2 cut(s) 1436, 1981
BsiSI CCGG 2 cut(s) 672, 2159
BslFI GGGAC 7 cut(s) 2, 128, 320, 446, 1172, 1830, 2051
BslI CCNNNNNNNGG 4 cut(s) 749, 1411, 2227, 2304
BsmAI GTCTC 4 cut(s) 266, 725, 1734, 1883
BsmFI GGGAC 7 cut(s) 2, 128, 320, 446, 1172, 1830, 2051
BsmI GAATGC 1 cut(s) 1087
BsnI GGCC 4 cut(s) 257, 524, 1244, 2088
Bso31I GGTCTC 2 cut(s) 725, 1883
Bsp119I TTCGAA 1 cut(s) 624
Bsp1286I GDGCHC 3 cut(s) 1436, 1981, 2311
Bsp13I TCCGGA 1 cut(s) 2158
Bsp143I GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
Bsp1720I GCTNAGC 2 cut(s) 1167, 1608
BspACI CCGC 6 cut(s) 549, 765, 1073, 1565, 1928, 2114
BspANI GGCC 4 cut(s) 257, 524, 1244, 2088
BspCNI CTCAG 3 cut(s) 94, 1159, 1600
BspEI TCCGGA 1 cut(s) 2158
BspFNI CGCG 1 cut(s) 2114
BspHI TCATGA 1 cut(s) 537
BspMAI CTGCAG 1 cut(s) 2008
BspOI GCTAGC 1 cut(s) 2198
BspPI GGATC 3 cut(s) 1046, 1402, 1860
BspQI GCTCTTC 2 cut(s) 198, 855
BspT104I TTCGAA 1 cut(s) 624
BspTI CTTAAG 1 cut(s) 2330
BspTNI GGTCTC 2 cut(s) 725, 1883
BsrBI CCGCTC 1 cut(s) 1075
BsrDI GCAATG 2 cut(s) 1245, 2244
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 6 cut(s) 392, 650, 865, 1300, 2207, 2302
BssAI RCCGGY 1 cut(s) 671
BssECI CCNNGG 6 cut(s) 145, 186, 258, 519, 1553, 1848
BssMI GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
BssNAI GTATAC 1 cut(s) 1293
BssT1I CCWWGG 4 cut(s) 186, 258, 1553, 1848
Bst1107I GTATAC 1 cut(s) 1293
Bst2UI CCWGG 5 cut(s) 147, 520, 601, 1412, 2022
Bst4CI ACNGT 6 cut(s) 288, 938, 1227, 1438, 1591, 2017
Bst6I CTCTTC 6 cut(s) 198, 827, 855, 1145, 1320, 1499
BstAFI CTTAAG 1 cut(s) 2330
BstBAI YACGTR 1 cut(s) 1537
BstBI TTCGAA 1 cut(s) 624
BstC8I GCNNGC 4 cut(s) 417, 767, 2116, 2196
BstDEI CTNAG 4 cut(s) 102, 561, 1167, 1608
BstFNI CGCG 1 cut(s) 2114
BstH2I RGCGCY 1 cut(s) 1167
BstHHI GCGC 2 cut(s) 1166, 1836
BstKTI GATC 9 cut(s) 1054, 1336, 1410, 1547, 1636, 1855, 2127, 2175, 2253
BstMAI GTCTC 4 cut(s) 266, 725, 1734, 1883
BstMBI GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
BstMCI CGRYCG 1 cut(s) 2175
BstMWI GCNNNNNNNGC 5 cut(s) 197, 263, 596, 766, 818
BstNI CCWGG 5 cut(s) 147, 520, 601, 1412, 2022
BstNSI RCATGY 6 cut(s) 533, 1185, 1432, 1520, 1708, 1715
BstPAI GACNNNNGTC 1 cut(s) 332
BstSCI CCNGG 5 cut(s) 145, 518, 599, 1410, 2020
BstSFI CTRYAG 3 cut(s) 736, 1223, 2004
BstSLI GKGCMC 1 cut(s) 1436
BstUI CGCG 1 cut(s) 2114
BstV1I GCAGC 6 cut(s) 17, 1591, 1695, 1775, 1990, 2018
BstV2I GAAGAC 2 cut(s) 477, 558
BstX2I RGATCY 3 cut(s) 1407, 1544, 1852
BstYI RGATCY 3 cut(s) 1407, 1544, 1852
BstZ17I GTATAC 1 cut(s) 1293
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 4 cut(s) 257, 524, 1244, 2088
BtrI CACGTC 1 cut(s) 877
BtsI GCAGTG 1 cut(s) 2016
BtsIMutI CAGTG 5 cut(s) 385, 1232, 1443, 2016, 2309
Cac8I GCNNGC 4 cut(s) 417, 767, 2116, 2196
CaiI CAGNNNCTG 2 cut(s) 1411, 2021
CciI TCATGA 1 cut(s) 537
CfoI GCGC 2 cut(s) 1166, 1836
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 1 cut(s) 522
Csp6I GTAC 1 cut(s) 948
CviQI GTAC 1 cut(s) 948
DdeI CTNAG 4 cut(s) 102, 561, 1167, 1608
DpnI GATC 9 cut(s) 1053, 1335, 1409, 1546, 1635, 1854, 2126, 2174, 2252
DpnII GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
DraIII CACNNNGTG 1 cut(s) 1889
EaeI YGGCCR 2 cut(s) 255, 1242
Eam1104I CTCTTC 6 cut(s) 198, 827, 855, 1145, 1320, 1499
EarI CTCTTC 6 cut(s) 198, 827, 855, 1145, 1320, 1499
Eco130I CCWWGG 4 cut(s) 186, 258, 1553, 1848
Eco24I GRGCYC 1 cut(s) 2311
Eco31I GGTCTC 2 cut(s) 725, 1883
Eco57I CTGAAG 3 cut(s) 60, 441, 1169
EcoO109I RGGNCCY 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 5 cut(s) 145, 518, 599, 1410, 2020
EcoT14I CCWWGG 4 cut(s) 186, 258, 1553, 1848
EcoT38I GRGCYC 1 cut(s) 2311
ErhI CCWWGG 4 cut(s) 186, 258, 1553, 1848
FalI AAGNNNNNCTT 2 cut(s) 1577, 1609
FaqI GGGAC 7 cut(s) 2, 128, 320, 446, 1172, 1830, 2051
FauI CCCGC 4 cut(s) 542, 758, 1921, 2107
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 1633
FblI GTMKAC 1 cut(s) 1292
Fnu4HI GCNGC 6 cut(s) 6, 1605, 1709, 1764, 2004, 2007
FriOI GRGCYC 1 cut(s) 2311
Fsp4HI GCNGC 6 cut(s) 6, 1605, 1709, 1764, 2004, 2007
FspBI CTAG 8 cut(s) 9, 21, 332, 339, 467, 932, 2195, 2279
GlaI GCGC 2 cut(s) 1165, 1835
GluI GCNGC 6 cut(s) 6, 1605, 1709, 1764, 2004, 2007
GsuI CTGGAG 2 cut(s) 409, 633
HaeII RGCGCY 1 cut(s) 1167
HaeIII GGCC 4 cut(s) 257, 524, 1244, 2088
HapII CCGG 2 cut(s) 672, 2159
HhaI GCGC 2 cut(s) 1166, 1836
Hin6I GCGC 2 cut(s) 1164, 1834
HinP1I GCGC 2 cut(s) 1164, 1834
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 3 cut(s) 656, 1368, 1423
HpaII CCGG 2 cut(s) 672, 2159
HphI GGTGA 2 cut(s) 161, 412
Hpy166II GTNNAC 5 cut(s) 655, 1293, 1434, 1655, 2290
Hpy188I TCNGA 7 cut(s) 103, 1089, 1142, 1422, 1638, 1873, 2313
Hpy8I GTNNAC 5 cut(s) 655, 1293, 1434, 1655, 2290
Hpy99I CGWCG 3 cut(s) 668, 878, 997
HpyAV CCTTC 6 cut(s) 473, 1049, 1296, 1819, 2225, 2265
HpyCH4III ACNGT 6 cut(s) 288, 938, 1227, 1438, 1591, 2017
HpyCH4IV ACGT 6 cut(s) 117, 435, 876, 946, 1302, 1536
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 263, 596, 766, 818
HpyF3I CTNAG 4 cut(s) 102, 561, 1167, 1608
HpySE526I ACGT 6 cut(s) 117, 435, 876, 946, 1302, 1536
HspAI GCGC 2 cut(s) 1164, 1834
Kpn2I TCCGGA 1 cut(s) 2158
Ksp22I TGATCA 1 cut(s) 1633
Kzo9I GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
LguI GCTCTTC 2 cut(s) 198, 855
LmnI GCTCC 5 cut(s) 390, 1080, 1401, 1525, 1831
Lsp1109I GCAGC 6 cut(s) 17, 1591, 1695, 1775, 1990, 2018
LweI GCATC 6 cut(s) 253, 547, 586, 979, 1360, 1621
MaeI CTAG 8 cut(s) 9, 21, 332, 339, 467, 932, 2195, 2279
MaeII ACGT 6 cut(s) 117, 435, 876, 946, 1302, 1536
MaeIII GTNAC 6 cut(s) 242, 575, 1129, 1298, 1567, 2011
MalI GATC 9 cut(s) 1053, 1335, 1409, 1546, 1635, 1854, 2126, 2174, 2252
MbiI CCGCTC 1 cut(s) 1075
MboI GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
MfeI CAATTG 1 cut(s) 1342
MflI RGATCY 3 cut(s) 1407, 1544, 1852
MhlI GDGCHC 3 cut(s) 1436, 1981, 2311
MlsI TGGCCA 2 cut(s) 257, 1244
MluNI TGGCCA 2 cut(s) 257, 1244
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 1194
Mox20I TGGCCA 2 cut(s) 257, 1244
MroI TCCGGA 1 cut(s) 2158
MscI TGGCCA 2 cut(s) 257, 1244
MseI TTAA 8 cut(s) 95, 366, 1442, 1736, 2031, 2294, 2331, 2353
MslI CAYNNNNRTG 3 cut(s) 251, 1476, 2221
Msp20I TGGCCA 2 cut(s) 257, 1244
MspA1I CMGCKG 1 cut(s) 134
MspCI CTTAAG 1 cut(s) 2330
MspI CCGG 2 cut(s) 672, 2159
MspR9I CCNGG 5 cut(s) 147, 520, 601, 1412, 2022
MunI CAATTG 1 cut(s) 1342
Mva1269I GAATGC 1 cut(s) 1087
MvaI CCWGG 5 cut(s) 147, 520, 601, 1412, 2022
MvnI CGCG 1 cut(s) 2114
MwoI GCNNNNNNNGC 5 cut(s) 197, 263, 596, 766, 818
NdeI CATATG 1 cut(s) 721
NdeII GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
NheI GCTAGC 1 cut(s) 2194
NmuCI GTSAC 5 cut(s) 242, 575, 1298, 1567, 2011
NspI RCATGY 6 cut(s) 533, 1185, 1432, 1520, 1708, 1715
NspV TTCGAA 1 cut(s) 624
PagI TCATGA 1 cut(s) 537
PciI ACATGT 1 cut(s) 1181
PciSI GCTCTTC 2 cut(s) 198, 855
PctI GAATGC 1 cut(s) 1087
PfeI GAWTC 2 cut(s) 1368, 1423
PflFI GACNNNGTC 2 cut(s) 119, 437
PflMI CCANNNNNTGG 1 cut(s) 1411
PfoI TCCNGGA 1 cut(s) 1410
PkrI GCNGC 6 cut(s) 7, 1606, 1710, 1765, 2005, 2008
Ple19I CGATCG 1 cut(s) 2175
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Ppu21I YACGTR 1 cut(s) 1537
PscI ACATGT 1 cut(s) 1181
PshAI GACNNNNGTC 1 cut(s) 332
Psp6I CCWGG 5 cut(s) 145, 518, 599, 1410, 2020
PspGI CCWGG 5 cut(s) 145, 518, 599, 1410, 2020
PspPI GGNCC 1 cut(s) 522
PstI CTGCAG 1 cut(s) 2008
PstNI CAGNNNCTG 2 cut(s) 1411, 2021
PsuI RGATCY 3 cut(s) 1407, 1544, 1852
PsyI GACNNNGTC 2 cut(s) 119, 437
PvuI CGATCG 1 cut(s) 2175
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 949
RsaNI GTAC 1 cut(s) 948
RseI CAYNNNNRTG 3 cut(s) 251, 1476, 2221
SapI GCTCTTC 2 cut(s) 198, 855
SaqAI TTAA 8 cut(s) 95, 366, 1442, 1736, 2031, 2294, 2331, 2353
SatI GCNGC 6 cut(s) 6, 1605, 1709, 1764, 2004, 2007
Sau3AI GATC 9 cut(s) 1051, 1333, 1407, 1544, 1633, 1852, 2124, 2172, 2250
Sau96I GGNCC 1 cut(s) 522
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 5 cut(s) 147, 520, 601, 1412, 2022
SduI GDGCHC 3 cut(s) 1436, 1981, 2311
SfaNI GCATC 6 cut(s) 253, 547, 586, 979, 1360, 1621
SfcI CTRYAG 3 cut(s) 736, 1223, 2004
SfuI TTCGAA 1 cut(s) 624
SmiMI CAYNNNNRTG 3 cut(s) 251, 1476, 2221
SmlI CTYRAG 1 cut(s) 2330
SmoI CTYRAG 1 cut(s) 2330
SpeI ACTAGT 1 cut(s) 331
SsiI CCGC 6 cut(s) 549, 765, 1073, 1565, 1928, 2114
SspI AATATT 2 cut(s) 1066, 1744
SspMI CTAG 8 cut(s) 9, 21, 332, 339, 467, 932, 2195, 2279
StyD4I CCNGG 5 cut(s) 145, 518, 599, 1410, 2020
StyI CCWWGG 4 cut(s) 186, 258, 1553, 1848
TaaI ACNGT 6 cut(s) 288, 938, 1227, 1438, 1591, 2017
TaiI ACGT 6 cut(s) 120, 438, 879, 949, 1305, 1539
TaqI TCGA 7 cut(s) 84, 123, 312, 624, 659, 1050, 1756
TfiI GAWTC 2 cut(s) 1368, 1423
Tru1I TTAA 8 cut(s) 95, 366, 1442, 1736, 2031, 2294, 2331, 2353
Tru9I TTAA 8 cut(s) 95, 366, 1442, 1736, 2031, 2294, 2331, 2353
TscAI CASTG 5 cut(s) 392, 1232, 1443, 2016, 2309
TseFI GTSAC 5 cut(s) 242, 575, 1298, 1567, 2011
TseI GCWGC 6 cut(s) 5, 1604, 1708, 1763, 2003, 2006
Tsp45I GTSAC 5 cut(s) 242, 575, 1298, 1567, 2011
TspGWI ACGGA 3 cut(s) 230, 992, 1010
TspRI CASTG 5 cut(s) 392, 1232, 1443, 2016, 2309
Tth111I GACNNNGTC 2 cut(s) 119, 437
Van91I CCANNNNNTGG 1 cut(s) 1411
Vha464I CTTAAG 1 cut(s) 2330
VneI GTGCAC 1 cut(s) 1432
XapI RAATTY 4 cut(s) 491, 636, 1416, 1867
XceI RCATGY 6 cut(s) 533, 1185, 1432, 1520, 1708, 1715
XmiI GTMKAC 1 cut(s) 1292
XspI CTAG 8 cut(s) 9, 21, 332, 339, 467, 932, 2195, 2279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.