protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NYN_YacP | PF05991 | 125 - 290 | 2.9e-42 | YacP-like NYN domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 98 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 37 |
| AccI | GTMKAC | 2 cut(s) | 797, 849 |
| AccII | CGCG | 3 cut(s) | 315, 452, 454 |
| AclI | AACGTT | 1 cut(s) | 177 |
| AclWI | GGATC | 3 cut(s) | 293, 311, 870 |
| AcoI | YGGCCR | 1 cut(s) | 102 |
| AcuI | CTGAAG | 1 cut(s) | 437 |
| AcvI | CACGTG | 1 cut(s) | 62 |
| AfaI | GTAC | 1 cut(s) | 389 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 720 |
| AgsI | TTSAA | 4 cut(s) | 202, 617, 785, 809 |
| AhlI | ACTAGT | 1 cut(s) | 254 |
| AjnI | CCWGG | 1 cut(s) | 345 |
| AluBI | AGCT | 6 cut(s) | 196, 415, 463, 475, 515, 632 |
| AluI | AGCT | 6 cut(s) | 196, 415, 463, 475, 515, 632 |
| Alw26I | GTCTC | 2 cut(s) | 126, 433 |
| AlwI | GGATC | 3 cut(s) | 293, 311, 870 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 368, 463 |
| AoxI | GGCC | 1 cut(s) | 102 |
| ApeKI | GCWGC | 6 cut(s) | 127, 193, 629, 688, 695, 726 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 215 |
| AspLEI | GCGC | 3 cut(s) | 239, 454, 456 |
| AsuHPI | GGTGA | 2 cut(s) | 286, 602 |
| BalI | TGGCCA | 1 cut(s) | 104 |
| BanII | GRGCYC | 1 cut(s) | 143 |
| BbrPI | CACGTG | 1 cut(s) | 62 |
| BbvI | GCAGC | 6 cut(s) | 139, 205, 641, 700, 707, 738 |
| BccI | CCATC | 2 cut(s) | 377, 638 |
| BciT130I | CCWGG | 1 cut(s) | 347 |
| BclI | TGATCA | 2 cut(s) | 276, 676 |
| BcoDI | GTCTC | 2 cut(s) | 126, 433 |
| BcuI | ACTAGT | 1 cut(s) | 254 |
| BfaI | CTAG | 2 cut(s) | 234, 255 |
| BisI | GCNGC | 6 cut(s) | 128, 194, 630, 689, 696, 727 |
| BlsI | GCNGC | 6 cut(s) | 129, 195, 631, 690, 697, 728 |
| Bme1390I | CCNGG | 1 cut(s) | 347 |
| BmiI | GGNNCC | 1 cut(s) | 712 |
| BmrFI | CCNGG | 1 cut(s) | 347 |
| BmsI | GCATC | 4 cut(s) | 514, 595, 764, 768 |
| BpuEI | CTTGAG | 1 cut(s) | 842 |
| BsaAI | YACGTR | 1 cut(s) | 62 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 346 |
| BsaWI | WCCGGW | 1 cut(s) | 261 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 720 |
| BseBI | CCWGG | 1 cut(s) | 347 |
| BseDI | CCNNGG | 2 cut(s) | 161, 346 |
| BseGI | GGATG | 3 cut(s) | 649, 653, 783 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 720 |
| BseMII | CTCAG | 5 cut(s) | 135, 137, 600, 735, 852 |
| BsePI | GCGCGC | 1 cut(s) | 452 |
| BseRI | GAGGAG | 1 cut(s) | 147 |
| BseXI | GCAGC | 6 cut(s) | 139, 205, 641, 700, 707, 738 |
| Bsh1236I | CGCG | 3 cut(s) | 315, 452, 454 |
| BshFI | GGCC | 1 cut(s) | 104 |
| BsiSI | CCGG | 1 cut(s) | 262 |
| BslFI | GGGAC | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 720 |
| BsmAI | GTCTC | 2 cut(s) | 126, 433 |
| BsmFI | GGGAC | 1 cut(s) | 25 |
| BsmI | GAATGC | 2 cut(s) | 247, 364 |
| BsnI | GGCC | 1 cut(s) | 104 |
| Bsp1286I | GDGCHC | 1 cut(s) | 143 |
| Bsp143I | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| Bsp68I | TCGCGA | 1 cut(s) | 315 |
| BspANI | GGCC | 1 cut(s) | 104 |
| BspCNI | CTCAG | 5 cut(s) | 136, 136, 599, 736, 851 |
| BspFNI | CGCG | 3 cut(s) | 315, 452, 454 |
| BspHI | TCATGA | 1 cut(s) | 18 |
| BspLI | GGNNCC | 1 cut(s) | 712 |
| BspPI | GGATC | 3 cut(s) | 293, 311, 870 |
| BssECI | CCNNGG | 2 cut(s) | 161, 346 |
| BssHII | GCGCGC | 1 cut(s) | 452 |
| BssMI | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| Bst2UI | CCWGG | 1 cut(s) | 347 |
| Bst6I | CTCTTC | 1 cut(s) | 76 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 190 |
| BstBAI | YACGTR | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 4 cut(s) | 454, 491, 568, 693 |
| BstDEI | CTNAG | 7 cut(s) | 123, 144, 494, 586, 744, 838, 866 |
| BstF5I | GGATG | 3 cut(s) | 649, 653, 783 |
| BstFNI | CGCG | 3 cut(s) | 315, 452, 454 |
| BstHHI | GCGC | 3 cut(s) | 239, 454, 456 |
| BstKTI | GATC | 5 cut(s) | 279, 301, 319, 679, 865 |
| BstMAI | GTCTC | 2 cut(s) | 126, 433 |
| BstMBI | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 190, 373, 460, 704 |
| BstNI | CCWGG | 1 cut(s) | 347 |
| BstNSI | RCATGY | 1 cut(s) | 493 |
| BstSCI | CCNGG | 1 cut(s) | 345 |
| BstUI | CGCG | 3 cut(s) | 315, 452, 454 |
| BstV1I | GCAGC | 6 cut(s) | 139, 205, 641, 700, 707, 738 |
| BstX2I | RGATCY | 2 cut(s) | 298, 862 |
| BstYI | RGATCY | 2 cut(s) | 298, 862 |
| BsuRI | GGCC | 1 cut(s) | 104 |
| BtsCI | GGATG | 3 cut(s) | 649, 653, 783 |
| BtsI | GCAGTG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 1 cut(s) | 369 |
| BtuMI | TCGCGA | 1 cut(s) | 315 |
| Cac8I | GCNNGC | 4 cut(s) | 454, 491, 568, 693 |
| CaiI | CAGNNNCTG | 2 cut(s) | 368, 463 |
| CciI | TCATGA | 1 cut(s) | 18 |
| CfoI | GCGC | 3 cut(s) | 239, 454, 456 |
| CseI | GACGC | 1 cut(s) | 860 |
| Csp6I | GTAC | 1 cut(s) | 388 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 379, 414 |
| CviAII | CATG | 5 cut(s) | 19, 490, 529, 680, 701 |
| CviQI | GTAC | 1 cut(s) | 388 |
| DdeI | CTNAG | 7 cut(s) | 123, 144, 494, 586, 744, 838, 866 |
| DpnI | GATC | 5 cut(s) | 278, 300, 318, 678, 864 |
| DpnII | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 37 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 37 |
| EaeI | YGGCCR | 1 cut(s) | 102 |
| Eam1104I | CTCTTC | 1 cut(s) | 76 |
| EarI | CTCTTC | 1 cut(s) | 76 |
| Eco24I | GRGCYC | 1 cut(s) | 143 |
| Eco32I | GATATC | 1 cut(s) | 448 |
| Eco57I | CTGAAG | 1 cut(s) | 437 |
| Eco72I | CACGTG | 1 cut(s) | 62 |
| EcoRII | CCWGG | 1 cut(s) | 345 |
| EcoRV | GATATC | 1 cut(s) | 448 |
| EcoT38I | GRGCYC | 1 cut(s) | 143 |
| FaeI | CATG | 5 cut(s) | 22, 493, 532, 683, 704 |
| FaiI | YATR | 9 cut(s) | 20, 98, 208, 339, 397, 491, 530, 681, 702 |
| FaqI | GGGAC | 1 cut(s) | 25 |
| FatI | CATG | 5 cut(s) | 18, 489, 528, 679, 700 |
| FbaI | TGATCA | 2 cut(s) | 276, 676 |
| FblI | GTMKAC | 2 cut(s) | 797, 849 |
| Fnu4HI | GCNGC | 6 cut(s) | 128, 194, 630, 689, 696, 727 |
| FokI | GGATG | 3 cut(s) | 656, 660, 790 |
| FriOI | GRGCYC | 1 cut(s) | 143 |
| Fsp4HI | GCNGC | 6 cut(s) | 128, 194, 630, 689, 696, 727 |
| FspBI | CTAG | 2 cut(s) | 234, 255 |
| GlaI | GCGC | 3 cut(s) | 238, 453, 455 |
| GluI | GCNGC | 6 cut(s) | 128, 194, 630, 689, 696, 727 |
| HaeIII | GGCC | 1 cut(s) | 104 |
| HapII | CCGG | 1 cut(s) | 262 |
| HgaI | GACGC | 1 cut(s) | 860 |
| HhaI | GCGC | 3 cut(s) | 239, 454, 456 |
| Hin1II | CATG | 5 cut(s) | 22, 493, 532, 683, 704 |
| Hin6I | GCGC | 3 cut(s) | 237, 452, 454 |
| HinP1I | GCGC | 3 cut(s) | 237, 452, 454 |
| HinfI | GANTC | 3 cut(s) | 15, 328, 836 |
| HpaII | CCGG | 1 cut(s) | 262 |
| HphI | GGTGA | 2 cut(s) | 286, 602 |
| Hpy166II | GTNNAC | 2 cut(s) | 798, 850 |
| Hpy188I | TCNGA | 6 cut(s) | 145, 162, 676, 745, 841, 883 |
| Hpy188III | TCNNGA | 6 cut(s) | 19, 293, 302, 314, 537, 833 |
| Hpy8I | GTNNAC | 2 cut(s) | 798, 850 |
| Hpy99I | CGWCG | 1 cut(s) | 40 |
| HpyAV | CCTTC | 6 cut(s) | 144, 205, 265, 499, 724, 757 |
| HpyCH4IV | ACGT | 2 cut(s) | 61, 177 |
| HpyCH4V | TGCA | 3 cut(s) | 193, 362, 629 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 190, 373, 460, 704 |
| HpyF3I | CTNAG | 7 cut(s) | 123, 144, 494, 586, 744, 838, 866 |
| HpySE526I | ACGT | 2 cut(s) | 61, 177 |
| Hsp92II | CATG | 5 cut(s) | 22, 493, 532, 683, 704 |
| HspAI | GCGC | 3 cut(s) | 237, 452, 454 |
| Ksp22I | TGATCA | 2 cut(s) | 276, 676 |
| Kzo9I | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| LmnI | GCTCC | 3 cut(s) | 704, 710, 723 |
| Lsp1109I | GCAGC | 6 cut(s) | 139, 205, 641, 700, 707, 738 |
| LweI | GCATC | 4 cut(s) | 514, 595, 764, 768 |
| MaeI | CTAG | 2 cut(s) | 234, 255 |
| MaeII | ACGT | 2 cut(s) | 61, 177 |
| MaeIII | GTNAC | 4 cut(s) | 83, 257, 478, 667 |
| MalI | GATC | 5 cut(s) | 278, 300, 318, 678, 864 |
| MboI | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| MboII | GAAGA | 6 cut(s) | 44, 63, 308, 430, 569, 797 |
| MflI | RGATCY | 2 cut(s) | 298, 862 |
| MhlI | GDGCHC | 1 cut(s) | 143 |
| MlsI | TGGCCA | 1 cut(s) | 104 |
| MluNI | TGGCCA | 1 cut(s) | 104 |
| MlyI | GAGTC | 3 cut(s) | 24, 322, 830 |
| MnlI | CCTC | 8 cut(s) | 43, 156, 165, 168, 616, 634, 760, 768 |
| Mox20I | TGGCCA | 1 cut(s) | 104 |
| MroXI | GAANNNNTTC | 1 cut(s) | 215 |
| MscI | TGGCCA | 1 cut(s) | 104 |
| MseI | TTAA | 3 cut(s) | 635, 750, 821 |
| Msp20I | TGGCCA | 1 cut(s) | 104 |
| MspI | CCGG | 1 cut(s) | 262 |
| MspR9I | CCNGG | 1 cut(s) | 347 |
| Mva1269I | GAATGC | 2 cut(s) | 247, 364 |
| MvaI | CCWGG | 1 cut(s) | 347 |
| MvnI | CGCG | 3 cut(s) | 315, 452, 454 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 190, 373, 460, 704 |
| NdeII | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| NlaIII | CATG | 5 cut(s) | 22, 493, 532, 683, 704 |
| NlaIV | GGNNCC | 1 cut(s) | 712 |
| NmuCI | GTSAC | 2 cut(s) | 83, 667 |
| NruI | TCGCGA | 1 cut(s) | 315 |
| NspI | RCATGY | 1 cut(s) | 493 |
| PaeI | GCATGC | 1 cut(s) | 493 |
| PagI | TCATGA | 1 cut(s) | 18 |
| PauI | GCGCGC | 1 cut(s) | 452 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 32 |
| PctI | GAATGC | 2 cut(s) | 247, 364 |
| PdmI | GAANNNNTTC | 1 cut(s) | 215 |
| PflFI | GACNNNGTC | 1 cut(s) | 34 |
| PkrI | GCNGC | 6 cut(s) | 129, 195, 631, 690, 697, 728 |
| PleI | GAGTC | 3 cut(s) | 23, 322, 830 |
| PmaCI | CACGTG | 1 cut(s) | 62 |
| PmlI | CACGTG | 1 cut(s) | 62 |
| PpsI | GAGTC | 3 cut(s) | 23, 322, 830 |
| Ppu21I | YACGTR | 1 cut(s) | 62 |
| PsiI | TTATAA | 1 cut(s) | 98 |
| Psp1406I | AACGTT | 1 cut(s) | 177 |
| Psp6I | CCWGG | 1 cut(s) | 345 |
| PspCI | CACGTG | 1 cut(s) | 62 |
| PspGI | CCWGG | 1 cut(s) | 345 |
| PspN4I | GGNNCC | 1 cut(s) | 712 |
| PstNI | CAGNNNCTG | 2 cut(s) | 368, 463 |
| PsuI | RGATCY | 2 cut(s) | 298, 862 |
| PsyI | GACNNNGTC | 1 cut(s) | 34 |
| PteI | GCGCGC | 1 cut(s) | 452 |
| RruI | TCGCGA | 1 cut(s) | 315 |
| RsaI | GTAC | 1 cut(s) | 389 |
| RsaNI | GTAC | 1 cut(s) | 388 |
| SaqAI | TTAA | 3 cut(s) | 635, 750, 821 |
| SatI | GCNGC | 6 cut(s) | 128, 194, 630, 689, 696, 727 |
| Sau3AI | GATC | 5 cut(s) | 276, 298, 316, 676, 862 |
| SchI | GAGTC | 3 cut(s) | 24, 322, 830 |
| ScrFI | CCNGG | 1 cut(s) | 347 |
| SduI | GDGCHC | 1 cut(s) | 143 |
| SfaNI | GCATC | 4 cut(s) | 514, 595, 764, 768 |
| SmlI | CTYRAG | 1 cut(s) | 857 |
| SmoI | CTYRAG | 1 cut(s) | 857 |
| SpeI | ACTAGT | 1 cut(s) | 254 |
| SphI | GCATGC | 1 cut(s) | 493 |
| SspMI | CTAG | 2 cut(s) | 234, 255 |
| StyD4I | CCNGG | 1 cut(s) | 345 |
| TaiI | ACGT | 2 cut(s) | 64, 180 |
| Tru1I | TTAA | 3 cut(s) | 635, 750, 821 |
| Tru9I | TTAA | 3 cut(s) | 635, 750, 821 |
| TscAI | CASTG | 1 cut(s) | 369 |
| TseFI | GTSAC | 2 cut(s) | 83, 667 |
| TseI | GCWGC | 6 cut(s) | 127, 193, 629, 688, 695, 726 |
| Tsp45I | GTSAC | 2 cut(s) | 83, 667 |
| TspDTI | ATGAA | 3 cut(s) | 17, 35, 706 |
| TspRI | CASTG | 1 cut(s) | 369 |
| Tth111I | GACNNNGTC | 1 cut(s) | 34 |
| XceI | RCATGY | 1 cut(s) | 493 |
| XmiI | GTMKAC | 2 cut(s) | 797, 849 |
| XmnI | GAANNNNTTC | 1 cut(s) | 215 |
| XspI | CTAG | 2 cut(s) | 234, 255 |