Domain of unknown function (DUF4219)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 28 - 98 | 1.1e-10 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 713 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 758 |
| Acc36I | ACCTGC | 1 cut(s) | 713 |
| AccBSI | CCGCTC | 1 cut(s) | 820 |
| AccII | CGCG | 3 cut(s) | 78, 434, 750 |
| AciI | CCGC | 7 cut(s) | 216, 297, 309, 432, 553, 748, 818 |
| AclWI | GGATC | 4 cut(s) | 369, 728, 739, 827 |
| AcoI | YGGCCR | 1 cut(s) | 921 |
| AcsI | RAATTY | 1 cut(s) | 1007 |
| AfaI | GTAC | 2 cut(s) | 567, 973 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 66, 484, 919 |
| AflII | CTTAAG | 1 cut(s) | 988 |
| AgsI | TTSAA | 2 cut(s) | 305, 958 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 250 |
| AjnI | CCWGG | 2 cut(s) | 266, 292 |
| AluBI | AGCT | 8 cut(s) | 98, 322, 338, 503, 686, 715, 767, 918 |
| AluI | AGCT | 8 cut(s) | 98, 322, 338, 503, 686, 715, 767, 918 |
| Alw26I | GTCTC | 2 cut(s) | 927, 1247 |
| AlwI | GGATC | 4 cut(s) | 369, 728, 739, 827 |
| Ama87I | CYCGRG | 2 cut(s) | 482, 738 |
| AoxI | GGCC | 3 cut(s) | 126, 273, 921 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| ApoI | RAATTY | 1 cut(s) | 1007 |
| AseI | ATTAAT | 1 cut(s) | 588 |
| AspLEI | GCGC | 1 cut(s) | 635 |
| AsuHPI | GGTGA | 3 cut(s) | 323, 380, 737 |
| AvaI | CYCGRG | 2 cut(s) | 482, 738 |
| BalI | TGGCCA | 1 cut(s) | 923 |
| BbsI | GAAGAC | 1 cut(s) | 293 |
| BccI | CCATC | 5 cut(s) | 365, 371, 514, 662, 1151 |
| BceAI | ACGGC | 2 cut(s) | 532, 793 |
| BciT130I | CCWGG | 2 cut(s) | 268, 294 |
| BcoDI | GTCTC | 2 cut(s) | 927, 1247 |
| BfaI | CTAG | 2 cut(s) | 323, 930 |
| BfrI | CTTAAG | 1 cut(s) | 988 |
| BfuAI | ACCTGC | 1 cut(s) | 713 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 272 |
| BisI | GCNGC | 2 cut(s) | 6, 432 |
| BlpI | GCTNAGC | 1 cut(s) | 318 |
| BlsI | GCNGC | 2 cut(s) | 7, 433 |
| Bme1390I | CCNGG | 2 cut(s) | 268, 294 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 250 |
| BmeT110I | CYCGRG | 2 cut(s) | 482, 738 |
| BmrFI | CCNGG | 2 cut(s) | 268, 294 |
| BmrI | ACTGGG | 1 cut(s) | 15 |
| BmsI | GCATC | 3 cut(s) | 214, 304, 535 |
| BmuI | ACTGGG | 1 cut(s) | 15 |
| BoxI | GACNNNNGTC | 1 cut(s) | 14 |
| BpiI | GAAGAC | 1 cut(s) | 293 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1252 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 318 |
| BsaBI | GATNNNNATC | 1 cut(s) | 732 |
| BsaI | GGTCTC | 1 cut(s) | 1247 |
| BsaJI | CCNNGG | 4 cut(s) | 267, 292, 483, 1089 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 66, 484, 919 |
| Bse118I | RCCGGY | 1 cut(s) | 999 |
| Bse1I | ACTGG | 2 cut(s) | 21, 795 |
| Bse3DI | GCAATG | 2 cut(s) | 924, 1118 |
| Bse8I | GATNNNNATC | 1 cut(s) | 732 |
| BseBI | CCWGG | 2 cut(s) | 268, 294 |
| BseDI | CCNNGG | 4 cut(s) | 267, 292, 483, 1089 |
| BseJI | GATNNNNATC | 1 cut(s) | 732 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 66, 484, 919 |
| BseMI | GCAATG | 2 cut(s) | 924, 1118 |
| BseMII | CTCAG | 3 cut(s) | 123, 332, 874 |
| BseNI | ACTGG | 2 cut(s) | 21, 795 |
| BseRI | GAGGAG | 1 cut(s) | 1044 |
| Bsh1236I | CGCG | 3 cut(s) | 78, 434, 750 |
| Bsh1285I | CGRYCG | 1 cut(s) | 678 |
| BshFI | GGCC | 3 cut(s) | 128, 275, 923 |
| BsiEI | CGRYCG | 1 cut(s) | 678 |
| BsiHKCI | CYCGRG | 2 cut(s) | 482, 738 |
| BsiSI | CCGG | 1 cut(s) | 1000 |
| BslFI | GGGAC | 3 cut(s) | 2, 257, 629 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 66, 484, 919 |
| BsmAI | GTCTC | 2 cut(s) | 927, 1247 |
| BsmFI | GGGAC | 3 cut(s) | 2, 257, 629 |
| BsmI | GAATGC | 1 cut(s) | 983 |
| BsnI | GGCC | 3 cut(s) | 128, 275, 923 |
| Bso31I | GGTCTC | 1 cut(s) | 1247 |
| BsoBI | CYCGRG | 2 cut(s) | 482, 738 |
| Bsp1407I | TGTACA | 1 cut(s) | 971 |
| Bsp143I | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 318 |
| Bsp19I | CCATGG | 1 cut(s) | 1089 |
| BspACI | CCGC | 7 cut(s) | 216, 297, 309, 432, 553, 748, 818 |
| BspANI | GGCC | 3 cut(s) | 128, 275, 923 |
| BspCNI | CTCAG | 3 cut(s) | 124, 331, 873 |
| BspFNI | CGCG | 3 cut(s) | 78, 434, 750 |
| BspMI | ACCTGC | 1 cut(s) | 713 |
| BspPI | GGATC | 4 cut(s) | 369, 728, 739, 827 |
| BspTI | CTTAAG | 1 cut(s) | 988 |
| BspTNI | GGTCTC | 1 cut(s) | 1247 |
| BsrBI | CCGCTC | 1 cut(s) | 820 |
| BsrDI | GCAATG | 2 cut(s) | 924, 1118 |
| BsrFI | RCCGGY | 1 cut(s) | 999 |
| BsrGI | TGTACA | 1 cut(s) | 971 |
| BsrI | ACTGG | 2 cut(s) | 21, 795 |
| BssAI | RCCGGY | 1 cut(s) | 999 |
| BssECI | CCNNGG | 4 cut(s) | 267, 292, 483, 1089 |
| BssMI | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| BssT1I | CCWWGG | 1 cut(s) | 1089 |
| Bst2UI | CCWGG | 2 cut(s) | 268, 294 |
| Bst4CI | ACNGT | 4 cut(s) | 13, 392, 526, 676 |
| Bst6I | CTCTTC | 1 cut(s) | 243 |
| BstAFI | CTTAAG | 1 cut(s) | 988 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 545 |
| BstAUI | TGTACA | 1 cut(s) | 971 |
| BstC8I | GCNNGC | 4 cut(s) | 198, 892, 1001, 1125 |
| BstDEI | CTNAG | 4 cut(s) | 132, 318, 860, 1252 |
| BstDSI | CCRYGG | 1 cut(s) | 1089 |
| BstFNI | CGCG | 3 cut(s) | 78, 434, 750 |
| BstHHI | GCGC | 1 cut(s) | 635 |
| BstKTI | GATC | 6 cut(s) | 364, 622, 736, 747, 785, 835 |
| BstMAI | GTCTC | 2 cut(s) | 927, 1247 |
| BstMBI | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| BstMCI | CGRYCG | 1 cut(s) | 678 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 197, 263, 272, 545 |
| BstNI | CCWGG | 2 cut(s) | 268, 294 |
| BstNSI | RCATGY | 3 cut(s) | 200, 972, 1127 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 14 |
| BstSCI | CCNGG | 2 cut(s) | 266, 292 |
| BstUI | CGCG | 3 cut(s) | 78, 434, 750 |
| BstV2I | GAAGAC | 1 cut(s) | 293 |
| BsuRI | GGCC | 3 cut(s) | 128, 275, 923 |
| BtgI | CCRYGG | 1 cut(s) | 1089 |
| BtsIMutI | CAGTG | 1 cut(s) | 129 |
| BveI | ACCTGC | 1 cut(s) | 713 |
| Cac8I | GCNNGC | 4 cut(s) | 198, 892, 1001, 1125 |
| CfoI | GCGC | 1 cut(s) | 635 |
| Cfr10I | RCCGGY | 1 cut(s) | 999 |
| CseI | GACGC | 1 cut(s) | 67 |
| Csp6I | GTAC | 2 cut(s) | 566, 972 |
| CviAII | CATG | 7 cut(s) | 197, 969, 1031, 1090, 1124, 1187, 1214 |
| CviQI | GTAC | 2 cut(s) | 566, 972 |
| DdeI | CTNAG | 4 cut(s) | 132, 318, 860, 1252 |
| DpnI | GATC | 6 cut(s) | 363, 621, 735, 746, 784, 834 |
| DpnII | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| DraI | TTTAAA | 1 cut(s) | 232 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 758 |
| DriI | GACNNNNNGTC | 1 cut(s) | 250 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 758 |
| EaeI | YGGCCR | 1 cut(s) | 921 |
| Eam1104I | CTCTTC | 1 cut(s) | 243 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 250 |
| EarI | CTCTTC | 1 cut(s) | 243 |
| Eco130I | CCWWGG | 1 cut(s) | 1089 |
| Eco147I | AGGCCT | 1 cut(s) | 275 |
| Eco31I | GGTCTC | 1 cut(s) | 1247 |
| Eco88I | CYCGRG | 2 cut(s) | 482, 738 |
| EcoRII | CCWGG | 2 cut(s) | 266, 292 |
| EcoT14I | CCWWGG | 1 cut(s) | 1089 |
| ErhI | CCWWGG | 1 cut(s) | 1089 |
| FaeI | CATG | 7 cut(s) | 200, 972, 1034, 1093, 1127, 1190, 1217 |
| FaqI | GGGAC | 3 cut(s) | 2, 257, 629 |
| FatI | CATG | 7 cut(s) | 196, 968, 1030, 1089, 1123, 1186, 1213 |
| FauI | CCCGC | 1 cut(s) | 546 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 432 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 432 |
| FspBI | CTAG | 2 cut(s) | 323, 930 |
| GlaI | GCGC | 1 cut(s) | 634 |
| GluI | GCNGC | 2 cut(s) | 6, 432 |
| HaeIII | GGCC | 3 cut(s) | 128, 275, 923 |
| HapII | CCGG | 1 cut(s) | 1000 |
| HgaI | GACGC | 1 cut(s) | 67 |
| HhaI | GCGC | 1 cut(s) | 635 |
| Hin1II | CATG | 7 cut(s) | 200, 972, 1034, 1093, 1127, 1190, 1217 |
| Hin6I | GCGC | 1 cut(s) | 633 |
| HinP1I | GCGC | 1 cut(s) | 633 |
| HincII | GTYRAC | 1 cut(s) | 34 |
| HindII | GTYRAC | 1 cut(s) | 34 |
| HindIII | AAGCTT | 1 cut(s) | 916 |
| HinfI | GANTC | 3 cut(s) | 251, 344, 1081 |
| HpaII | CCGG | 1 cut(s) | 1000 |
| HphI | GGTGA | 3 cut(s) | 323, 380, 737 |
| Hpy166II | GTNNAC | 2 cut(s) | 34, 974 |
| Hpy188I | TCNGA | 5 cut(s) | 61, 349, 511, 764, 943 |
| Hpy188III | TCNNGA | 3 cut(s) | 659, 904, 1063 |
| Hpy8I | GTNNAC | 2 cut(s) | 34, 974 |
| Hpy99I | CGWCG | 1 cut(s) | 518 |
| HpyAV | CCTTC | 2 cut(s) | 564, 987 |
| HpyCH4III | ACNGT | 4 cut(s) | 13, 392, 526, 676 |
| HpyCH4IV | ACGT | 2 cut(s) | 160, 1140 |
| HpyCH4V | TGCA | 9 cut(s) | 196, 200, 539, 580, 722, 983, 1123, 1127, 1190 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 197, 263, 272, 545 |
| HpyF3I | CTNAG | 4 cut(s) | 132, 318, 860, 1252 |
| HpySE526I | ACGT | 2 cut(s) | 160, 1140 |
| Hsp92II | CATG | 7 cut(s) | 200, 972, 1034, 1093, 1127, 1190, 1217 |
| HspAI | GCGC | 1 cut(s) | 633 |
| KroI | GCCGGC | 1 cut(s) | 999 |
| KroNI | GCCGGC | 1 cut(s) | 1001 |
| Kzo9I | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| LmnI | GCTCC | 3 cut(s) | 508, 712, 764 |
| LweI | GCATC | 3 cut(s) | 214, 304, 535 |
| MaeI | CTAG | 2 cut(s) | 323, 930 |
| MaeII | ACGT | 2 cut(s) | 160, 1140 |
| MaeIII | GTNAC | 1 cut(s) | 811 |
| MalI | GATC | 6 cut(s) | 363, 621, 735, 746, 784, 834 |
| MbiI | CCGCTC | 1 cut(s) | 820 |
| MboI | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| MlsI | TGGCCA | 1 cut(s) | 923 |
| MluCI | AATT | 6 cut(s) | 201, 946, 962, 1007, 1019, 1128 |
| MluNI | TGGCCA | 1 cut(s) | 923 |
| MlyI | GAGTC | 3 cut(s) | 260, 353, 1075 |
| MmeI | TCCRAC | 3 cut(s) | 420, 742, 1232 |
| Mox20I | TGGCCA | 1 cut(s) | 923 |
| MroNI | GCCGGC | 1 cut(s) | 999 |
| MscI | TGGCCA | 1 cut(s) | 923 |
| MseI | TTAA | 8 cut(s) | 45, 144, 231, 278, 471, 588, 899, 989 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1218 |
| Msp20I | TGGCCA | 1 cut(s) | 923 |
| MspCI | CTTAAG | 1 cut(s) | 988 |
| MspI | CCGG | 1 cut(s) | 1000 |
| MspR9I | CCNGG | 2 cut(s) | 268, 294 |
| Mva1269I | GAATGC | 1 cut(s) | 983 |
| MvaI | CCWGG | 2 cut(s) | 268, 294 |
| MvnI | CGCG | 3 cut(s) | 78, 434, 750 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 197, 263, 272, 545 |
| NaeI | GCCGGC | 1 cut(s) | 1001 |
| NcoI | CCATGG | 1 cut(s) | 1089 |
| NdeII | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| NgoMIV | GCCGGC | 1 cut(s) | 999 |
| NlaIII | CATG | 7 cut(s) | 200, 972, 1034, 1093, 1127, 1190, 1217 |
| NmuCI | GTSAC | 1 cut(s) | 811 |
| NspI | RCATGY | 3 cut(s) | 200, 972, 1127 |
| PaeI | GCATGC | 2 cut(s) | 200, 1127 |
| PaqCI | CACCTGC | 1 cut(s) | 713 |
| PceI | AGGCCT | 1 cut(s) | 275 |
| PctI | GAATGC | 1 cut(s) | 983 |
| PdiI | GCCGGC | 1 cut(s) | 1001 |
| PkrI | GCNGC | 2 cut(s) | 7, 433 |
| PleI | GAGTC | 3 cut(s) | 259, 352, 1075 |
| PpsI | GAGTC | 3 cut(s) | 259, 352, 1075 |
| PshAI | GACNNNNGTC | 1 cut(s) | 14 |
| PshBI | ATTAAT | 1 cut(s) | 588 |
| Psp6I | CCWGG | 2 cut(s) | 266, 292 |
| PspGI | CCWGG | 2 cut(s) | 266, 292 |
| RsaI | GTAC | 2 cut(s) | 567, 973 |
| RsaNI | GTAC | 2 cut(s) | 566, 972 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1218 |
| SaqAI | TTAA | 8 cut(s) | 45, 144, 231, 278, 471, 588, 899, 989 |
| SatI | GCNGC | 2 cut(s) | 6, 432 |
| Sau3AI | GATC | 6 cut(s) | 361, 619, 733, 744, 782, 832 |
| SchI | GAGTC | 3 cut(s) | 260, 353, 1075 |
| ScrFI | CCNGG | 2 cut(s) | 268, 294 |
| SfaNI | GCATC | 3 cut(s) | 214, 304, 535 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1218 |
| SmlI | CTYRAG | 1 cut(s) | 988 |
| SmoI | CTYRAG | 1 cut(s) | 988 |
| SphI | GCATGC | 2 cut(s) | 200, 1127 |
| Sse9I | AATT | 6 cut(s) | 201, 946, 962, 1007, 1019, 1128 |
| SseBI | AGGCCT | 1 cut(s) | 275 |
| SsiI | CCGC | 7 cut(s) | 216, 297, 309, 432, 553, 748, 818 |
| SspMI | CTAG | 2 cut(s) | 323, 930 |
| StuI | AGGCCT | 1 cut(s) | 275 |
| StyD4I | CCNGG | 2 cut(s) | 266, 292 |
| StyI | CCWWGG | 1 cut(s) | 1089 |
| TaaI | ACNGT | 4 cut(s) | 13, 392, 526, 676 |
| TaiI | ACGT | 2 cut(s) | 163, 1143 |
| TaqI | TCGA | 3 cut(s) | 543, 678, 732 |
| TasI | AATT | 6 cut(s) | 201, 946, 962, 1007, 1019, 1128 |
| TatI | WGTACW | 1 cut(s) | 971 |
| TauI | GCSGC | 1 cut(s) | 434 |
| Tru1I | TTAA | 8 cut(s) | 45, 144, 231, 278, 471, 588, 899, 989 |
| Tru9I | TTAA | 8 cut(s) | 45, 144, 231, 278, 471, 588, 899, 989 |
| TscAI | CASTG | 1 cut(s) | 136 |
| TseFI | GTSAC | 1 cut(s) | 811 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 1 cut(s) | 811 |
| TspDTI | ATGAA | 3 cut(s) | 194, 521, 1230 |
| TspRI | CASTG | 1 cut(s) | 136 |
| Vha464I | CTTAAG | 1 cut(s) | 988 |
| VspI | ATTAAT | 1 cut(s) | 588 |
| XapI | RAATTY | 1 cut(s) | 1007 |
| XceI | RCATGY | 3 cut(s) | 200, 972, 1127 |
| XspI | CTAG | 2 cut(s) | 323, 930 |