protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 48 - 159 | 7.9e-25 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 263 |
| AccB1I | GGYRCC | 3 cut(s) | 248, 440, 765 |
| AcsI | RAATTY | 2 cut(s) | 70, 388 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AcyI | GRCGYC | 1 cut(s) | 766 |
| AfaI | GTAC | 2 cut(s) | 45, 169 |
| AflIII | ACRYGT | 1 cut(s) | 603 |
| AgsI | TTSAA | 5 cut(s) | 321, 617, 635, 724, 752 |
| AjiI | CACGTC | 1 cut(s) | 357 |
| AjnI | CCWGG | 1 cut(s) | 223 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 716, 748 |
| Alw26I | GTCTC | 1 cut(s) | 110 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 224 |
| AoxI | GGCC | 2 cut(s) | 501, 619 |
| ApeKI | GCWGC | 3 cut(s) | 206, 209, 524 |
| ApoI | RAATTY | 2 cut(s) | 70, 388 |
| AspLEI | GCGC | 2 cut(s) | 182, 768 |
| AspS9I | GGNCC | 1 cut(s) | 501 |
| AsuHPI | GGTGA | 1 cut(s) | 638 |
| BaeGI | GKGCMC | 1 cut(s) | 253 |
| BanI | GGYRCC | 3 cut(s) | 248, 440, 765 |
| BbsI | GAAGAC | 2 cut(s) | 605, 606 |
| BbvI | GCAGC | 3 cut(s) | 193, 221, 511 |
| BccI | CCATC | 1 cut(s) | 71 |
| BceAI | ACGGC | 1 cut(s) | 488 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 123, 157 |
| BciT130I | CCWGG | 1 cut(s) | 225 |
| BcoDI | GTCTC | 1 cut(s) | 110 |
| BfaI | CTAG | 2 cut(s) | 513, 528 |
| BfmI | CTRYAG | 2 cut(s) | 14, 207 |
| BfoI | RGCGCY | 2 cut(s) | 183, 769 |
| BisI | GCNGC | 3 cut(s) | 207, 210, 525 |
| BlsI | GCNGC | 3 cut(s) | 208, 211, 526 |
| Bme1390I | CCNGG | 1 cut(s) | 225 |
| BmgBI | CACGTC | 1 cut(s) | 357 |
| BmgT120I | GGNCC | 1 cut(s) | 501 |
| BmiI | GGNNCC | 3 cut(s) | 250, 442, 767 |
| BmrFI | CCNGG | 1 cut(s) | 225 |
| BmrI | ACTGGG | 1 cut(s) | 719 |
| BmuI | ACTGGG | 1 cut(s) | 719 |
| BpiI | GAAGAC | 2 cut(s) | 605, 606 |
| BsaHI | GRCGYC | 1 cut(s) | 766 |
| BsaJI | CCNNGG | 2 cut(s) | 622, 769 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 665, 695 |
| Bse1I | ACTGG | 2 cut(s) | 536, 714 |
| BseBI | CCWGG | 1 cut(s) | 225 |
| BseDI | CCNNGG | 2 cut(s) | 622, 769 |
| BseGI | GGATG | 1 cut(s) | 408 |
| BseNI | ACTGG | 2 cut(s) | 536, 714 |
| BseRI | GAGGAG | 1 cut(s) | 602 |
| BseSI | GKGCMC | 1 cut(s) | 253 |
| BseXI | GCAGC | 3 cut(s) | 193, 221, 511 |
| BshFI | GGCC | 2 cut(s) | 503, 621 |
| BshNI | GGYRCC | 3 cut(s) | 248, 440, 765 |
| BsmAI | GTCTC | 1 cut(s) | 110 |
| BsnI | GGCC | 2 cut(s) | 503, 621 |
| Bsp1286I | GDGCHC | 1 cut(s) | 253 |
| BspANI | GGCC | 2 cut(s) | 503, 621 |
| BspHI | TCATGA | 1 cut(s) | 112 |
| BspLI | GGNNCC | 3 cut(s) | 250, 442, 767 |
| BspMAI | CTGCAG | 1 cut(s) | 211 |
| BspT107I | GGYRCC | 3 cut(s) | 248, 440, 765 |
| BsrI | ACTGG | 2 cut(s) | 536, 714 |
| BssECI | CCNNGG | 2 cut(s) | 622, 769 |
| BssNI | GRCGYC | 1 cut(s) | 766 |
| BssT1I | CCWWGG | 1 cut(s) | 622 |
| Bst2UI | CCWGG | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 4 cut(s) | 18, 99, 172, 220 |
| BstACI | GRCGYC | 1 cut(s) | 766 |
| BstDEI | CTNAG | 2 cut(s) | 267, 384 |
| BstF5I | GGATG | 1 cut(s) | 408 |
| BstH2I | RGCGCY | 2 cut(s) | 183, 769 |
| BstHHI | GCGC | 2 cut(s) | 182, 768 |
| BstMAI | GTCTC | 1 cut(s) | 110 |
| BstNI | CCWGG | 1 cut(s) | 225 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstSCI | CCNGG | 1 cut(s) | 223 |
| BstSFI | CTRYAG | 2 cut(s) | 14, 207 |
| BstSLI | GKGCMC | 1 cut(s) | 253 |
| BstV1I | GCAGC | 3 cut(s) | 193, 221, 511 |
| BstV2I | GAAGAC | 2 cut(s) | 605, 606 |
| BsuRI | GGCC | 2 cut(s) | 503, 621 |
| BtrI | CACGTC | 1 cut(s) | 357 |
| BtsCI | GGATG | 1 cut(s) | 408 |
| BtsIMutI | CAGTG | 2 cut(s) | 23, 47 |
| CaiI | CAGNNNCTG | 1 cut(s) | 224 |
| CciI | TCATGA | 1 cut(s) | 112 |
| CfoI | GCGC | 2 cut(s) | 182, 768 |
| Cfr13I | GGNCC | 1 cut(s) | 501 |
| Csp6I | GTAC | 2 cut(s) | 44, 168 |
| CviAII | CATG | 7 cut(s) | 92, 113, 196, 445, 478, 498, 604 |
| CviJI | RGCY | 2 cut(s) | 503, 621 |
| CviKI_1 | RGCY | 2 cut(s) | 503, 621 |
| CviQI | GTAC | 2 cut(s) | 44, 168 |
| DdeI | CTNAG | 2 cut(s) | 267, 384 |
| DinI | GGCGCC | 1 cut(s) | 767 |
| Eco130I | CCWWGG | 1 cut(s) | 622 |
| Eco147I | AGGCCT | 1 cut(s) | 621 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| EcoRII | CCWGG | 1 cut(s) | 223 |
| EcoT14I | CCWWGG | 1 cut(s) | 622 |
| EgeI | GGCGCC | 1 cut(s) | 767 |
| EheI | GGCGCC | 1 cut(s) | 767 |
| ErhI | CCWWGG | 1 cut(s) | 622 |
| FaeI | CATG | 7 cut(s) | 95, 116, 199, 448, 481, 501, 607 |
| FatI | CATG | 7 cut(s) | 91, 112, 195, 444, 477, 497, 603 |
| Fnu4HI | GCNGC | 3 cut(s) | 207, 210, 525 |
| FokI | GGATG | 1 cut(s) | 415 |
| Fsp4HI | GCNGC | 3 cut(s) | 207, 210, 525 |
| FspBI | CTAG | 2 cut(s) | 513, 528 |
| GlaI | GCGC | 2 cut(s) | 181, 767 |
| GluI | GCNGC | 3 cut(s) | 207, 210, 525 |
| HaeII | RGCGCY | 2 cut(s) | 183, 769 |
| HaeIII | GGCC | 2 cut(s) | 503, 621 |
| HhaI | GCGC | 2 cut(s) | 182, 768 |
| Hin1I | GRCGYC | 1 cut(s) | 766 |
| Hin1II | CATG | 7 cut(s) | 95, 116, 199, 448, 481, 501, 607 |
| Hin6I | GCGC | 2 cut(s) | 180, 766 |
| HinP1I | GCGC | 2 cut(s) | 180, 766 |
| HinfI | GANTC | 5 cut(s) | 109, 140, 348, 578, 641 |
| HphI | GGTGA | 1 cut(s) | 638 |
| Hpy166II | GTNNAC | 1 cut(s) | 102 |
| Hpy188I | TCNGA | 2 cut(s) | 76, 298 |
| Hpy188III | TCNNGA | 1 cut(s) | 113 |
| Hpy8I | GTNNAC | 1 cut(s) | 102 |
| HpyCH4III | ACNGT | 4 cut(s) | 18, 99, 172, 220 |
| HpyCH4IV | ACGT | 2 cut(s) | 356, 361 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 209, 368, 559 |
| HpyF3I | CTNAG | 2 cut(s) | 267, 384 |
| HpySE526I | ACGT | 2 cut(s) | 356, 361 |
| Hsp92I | GRCGYC | 1 cut(s) | 766 |
| Hsp92II | CATG | 7 cut(s) | 95, 116, 199, 448, 481, 501, 607 |
| HspAI | GCGC | 2 cut(s) | 180, 766 |
| KasI | GGCGCC | 1 cut(s) | 765 |
| LpnPI | CCDG | 6 cut(s) | 210, 231, 237, 549, 632, 695 |
| Lsp1109I | GCAGC | 3 cut(s) | 193, 221, 511 |
| MaeI | CTAG | 2 cut(s) | 513, 528 |
| MaeII | ACGT | 2 cut(s) | 356, 361 |
| MaeIII | GTNAC | 2 cut(s) | 190, 357 |
| MboII | GAAGA | 8 cut(s) | 149, 309, 383, 453, 605, 605, 608, 611 |
| MfeI | CAATTG | 1 cut(s) | 435 |
| MhlI | GDGCHC | 1 cut(s) | 253 |
| MluCI | AATT | 9 cut(s) | 70, 291, 388, 435, 560, 636, 656, 731, 747 |
| Mly113I | GGCGCC | 1 cut(s) | 766 |
| MlyI | GAGTC | 1 cut(s) | 635 |
| MmeI | TCCRAC | 1 cut(s) | 651 |
| MnlI | CCTC | 9 cut(s) | 22, 28, 124, 362, 479, 553, 580, 583, 764 |
| MseI | TTAA | 1 cut(s) | 24 |
| MslI | CAYNNNNRTG | 3 cut(s) | 446, 476, 550 |
| MspR9I | CCNGG | 1 cut(s) | 225 |
| MunI | CAATTG | 1 cut(s) | 435 |
| MvaI | CCWGG | 1 cut(s) | 225 |
| NarI | GGCGCC | 1 cut(s) | 766 |
| NlaIII | CATG | 7 cut(s) | 95, 116, 199, 448, 481, 501, 607 |
| NlaIV | GGNNCC | 3 cut(s) | 250, 442, 767 |
| NmuCI | GTSAC | 1 cut(s) | 357 |
| NspI | RCATGY | 1 cut(s) | 607 |
| PagI | TCATGA | 1 cut(s) | 112 |
| PceI | AGGCCT | 1 cut(s) | 621 |
| PciI | ACATGT | 1 cut(s) | 603 |
| PfeI | GAWTC | 4 cut(s) | 109, 140, 348, 578 |
| PkrI | GCNGC | 3 cut(s) | 208, 211, 526 |
| PleI | GAGTC | 1 cut(s) | 635 |
| PluTI | GGCGCC | 1 cut(s) | 769 |
| PpsI | GAGTC | 1 cut(s) | 635 |
| PscI | ACATGT | 1 cut(s) | 603 |
| PsiI | TTATAA | 1 cut(s) | 263 |
| Psp6I | CCWGG | 1 cut(s) | 223 |
| PspGI | CCWGG | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 3 cut(s) | 250, 442, 767 |
| PspPI | GGNCC | 1 cut(s) | 501 |
| PstI | CTGCAG | 1 cut(s) | 211 |
| PstNI | CAGNNNCTG | 1 cut(s) | 224 |
| RsaI | GTAC | 2 cut(s) | 45, 169 |
| RsaNI | GTAC | 2 cut(s) | 44, 168 |
| RseI | CAYNNNNRTG | 3 cut(s) | 446, 476, 550 |
| SaqAI | TTAA | 1 cut(s) | 24 |
| SatI | GCNGC | 3 cut(s) | 207, 210, 525 |
| Sau96I | GGNCC | 1 cut(s) | 501 |
| SchI | GAGTC | 1 cut(s) | 635 |
| ScrFI | CCNGG | 1 cut(s) | 225 |
| SduI | GDGCHC | 1 cut(s) | 253 |
| SetI | ASST | 5 cut(s) | 33, 250, 359, 364, 415 |
| SfcI | CTRYAG | 2 cut(s) | 14, 207 |
| SfoI | GGCGCC | 1 cut(s) | 767 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 446, 476, 550 |
| Sse9I | AATT | 9 cut(s) | 70, 291, 388, 435, 560, 636, 656, 731, 747 |
| SseBI | AGGCCT | 1 cut(s) | 621 |
| SspDI | GGCGCC | 1 cut(s) | 765 |
| SspI | AATATT | 1 cut(s) | 339 |
| SspMI | CTAG | 2 cut(s) | 513, 528 |
| StuI | AGGCCT | 1 cut(s) | 621 |
| StyD4I | CCNGG | 1 cut(s) | 223 |
| StyI | CCWWGG | 1 cut(s) | 622 |
| TaaI | ACNGT | 4 cut(s) | 18, 99, 172, 220 |
| TaiI | ACGT | 2 cut(s) | 359, 364 |
| TaqI | TCGA | 2 cut(s) | 143, 483 |
| TasI | AATT | 9 cut(s) | 70, 291, 388, 435, 560, 636, 656, 731, 747 |
| TatI | WGTACW | 1 cut(s) | 167 |
| TfiI | GAWTC | 4 cut(s) | 109, 140, 348, 578 |
| Tru1I | TTAA | 1 cut(s) | 24 |
| Tru9I | TTAA | 1 cut(s) | 24 |
| TscAI | CASTG | 2 cut(s) | 23, 54 |
| TseFI | GTSAC | 1 cut(s) | 357 |
| TseI | GCWGC | 3 cut(s) | 206, 209, 524 |
| Tsp45I | GTSAC | 1 cut(s) | 357 |
| TspDTI | ATGAA | 7 cut(s) | 108, 161, 277, 418, 570, 719, 743 |
| TspRI | CASTG | 2 cut(s) | 23, 54 |
| XapI | RAATTY | 2 cut(s) | 70, 388 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XspI | CTAG | 2 cut(s) | 513, 528 |