protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 495, 1019 |
| AarI | CACCTGC | 1 cut(s) | 1125 |
| Acc36I | ACCTGC | 1 cut(s) | 1125 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 251 |
| AccBSI | CCGCTC | 1 cut(s) | 795 |
| AccII | CGCG | 1 cut(s) | 639 |
| AciI | CCGC | 1 cut(s) | 793 |
| AclI | AACGTT | 1 cut(s) | 157 |
| AclWI | GGATC | 3 cut(s) | 33, 1042, 1060 |
| AcsI | RAATTY | 5 cut(s) | 124, 346, 608, 676, 856 |
| AcuI | CTGAAG | 1 cut(s) | 868 |
| AfaI | GTAC | 2 cut(s) | 1177, 1183 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 251, 560 |
| AflIII | ACRYGT | 2 cut(s) | 53, 966 |
| AgsI | TTSAA | 6 cut(s) | 140, 351, 463, 542, 665, 1194 |
| AjiI | CACGTC | 1 cut(s) | 56 |
| AjnI | CCWGG | 2 cut(s) | 336, 1137 |
| AleI | CACNNNNGTG | 1 cut(s) | 949 |
| AluBI | AGCT | 6 cut(s) | 179, 263, 371, 594, 814, 1089 |
| AluI | AGCT | 6 cut(s) | 179, 263, 371, 594, 814, 1089 |
| AlwI | GGATC | 3 cut(s) | 33, 1042, 1060 |
| Ama87I | CYCGRG | 1 cut(s) | 221 |
| ApeKI | GCWGC | 3 cut(s) | 383, 1144, 1158 |
| ApoI | RAATTY | 5 cut(s) | 124, 346, 608, 676, 856 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 953, 985 |
| AspS9I | GGNCC | 1 cut(s) | 563 |
| AsuHPI | GGTGA | 2 cut(s) | 194, 371 |
| AvaI | CYCGRG | 1 cut(s) | 221 |
| AvaII | GGWCC | 1 cut(s) | 563 |
| BbsI | GAAGAC | 1 cut(s) | 339 |
| BbvI | GCAGC | 3 cut(s) | 370, 1156, 1170 |
| BccI | CCATC | 3 cut(s) | 316, 883, 1001 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 494, 528 |
| BciT130I | CCWGG | 2 cut(s) | 338, 1139 |
| BfuAI | ACCTGC | 1 cut(s) | 1125 |
| BisI | GCNGC | 3 cut(s) | 384, 1145, 1159 |
| BlsI | GCNGC | 3 cut(s) | 385, 1146, 1160 |
| Bme1390I | CCNGG | 2 cut(s) | 338, 1139 |
| Bme18I | GGWCC | 1 cut(s) | 563 |
| BmeT110I | CYCGRG | 1 cut(s) | 221 |
| BmgBI | CACGTC | 1 cut(s) | 56 |
| BmgT120I | GGNCC | 1 cut(s) | 563 |
| BmrFI | CCNGG | 2 cut(s) | 338, 1139 |
| BmsI | GCATC | 3 cut(s) | 271, 445, 1145 |
| BpiI | GAAGAC | 1 cut(s) | 339 |
| BpmI | CTGGAG | 1 cut(s) | 519 |
| BpuEI | CTTGAG | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 251, 560 |
| Bse1I | ACTGG | 2 cut(s) | 473, 536 |
| Bse3DI | GCAATG | 3 cut(s) | 270, 1147, 1205 |
| BseBI | CCWGG | 2 cut(s) | 338, 1139 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 3 cut(s) | 210, 217, 599 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 251, 560 |
| BseMI | GCAATG | 3 cut(s) | 270, 1147, 1205 |
| BseMII | CTCAG | 3 cut(s) | 457, 726, 765 |
| BseNI | ACTGG | 2 cut(s) | 473, 536 |
| BseRI | GAGGAG | 2 cut(s) | 621, 624 |
| BseXI | GCAGC | 3 cut(s) | 370, 1156, 1170 |
| BseYI | CCCAGC | 2 cut(s) | 284, 1099 |
| BsgI | GTGCAG | 3 cut(s) | 927, 1103, 1163 |
| Bsh1236I | CGCG | 1 cut(s) | 639 |
| BsiHKCI | CYCGRG | 1 cut(s) | 221 |
| BslFI | GGGAC | 1 cut(s) | 1095 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 251, 560 |
| BsmFI | GGGAC | 1 cut(s) | 1095 |
| BsmI | GAATGC | 2 cut(s) | 419, 447 |
| BsoBI | CYCGRG | 1 cut(s) | 221 |
| Bsp143I | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| BspACI | CCGC | 1 cut(s) | 793 |
| BspCNI | CTCAG | 3 cut(s) | 456, 725, 764 |
| BspFNI | CGCG | 1 cut(s) | 639 |
| BspHI | TCATGA | 1 cut(s) | 63 |
| BspMI | ACCTGC | 1 cut(s) | 1125 |
| BspPI | GGATC | 3 cut(s) | 33, 1042, 1060 |
| BspQI | GCTCTTC | 1 cut(s) | 270 |
| BsrBI | CCGCTC | 1 cut(s) | 795 |
| BsrDI | GCAATG | 3 cut(s) | 270, 1147, 1205 |
| BsrI | ACTGG | 2 cut(s) | 473, 536 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssMI | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| Bst2UI | CCWGG | 2 cut(s) | 338, 1139 |
| Bst4CI | ACNGT | 3 cut(s) | 146, 661, 1075 |
| Bst6I | CTCTTC | 2 cut(s) | 270, 819 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 281, 941 |
| BstC8I | GCNNGC | 1 cut(s) | 177 |
| BstDEI | CTNAG | 3 cut(s) | 443, 712, 751 |
| BstF5I | GGATG | 3 cut(s) | 210, 217, 599 |
| BstFNI | CGCG | 1 cut(s) | 639 |
| BstKTI | GATC | 5 cut(s) | 28, 646, 1037, 1055, 1071 |
| BstMBI | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 176, 233, 281, 383, 941, 1158 |
| BstNI | CCWGG | 2 cut(s) | 338, 1139 |
| BstNSI | RCATGY | 3 cut(s) | 293, 847, 970 |
| BstSCI | CCNGG | 2 cut(s) | 336, 1137 |
| BstUI | CGCG | 1 cut(s) | 639 |
| BstV1I | GCAGC | 3 cut(s) | 370, 1156, 1170 |
| BstV2I | GAAGAC | 1 cut(s) | 339 |
| BstX2I | RGATCY | 2 cut(s) | 1034, 1052 |
| BstYI | RGATCY | 2 cut(s) | 1034, 1052 |
| BtrI | CACGTC | 1 cut(s) | 56 |
| BtsCI | GGATG | 3 cut(s) | 210, 217, 599 |
| BtsIMutI | CAGTG | 2 cut(s) | 892, 1080 |
| BveI | ACCTGC | 1 cut(s) | 1125 |
| Cac8I | GCNNGC | 1 cut(s) | 177 |
| CciI | TCATGA | 1 cut(s) | 63 |
| Cfr13I | GGNCC | 1 cut(s) | 563 |
| CseI | GACGC | 2 cut(s) | 628, 860 |
| Csp6I | GTAC | 2 cut(s) | 1176, 1182 |
| CviAII | CATG | 9 cut(s) | 64, 290, 418, 569, 683, 788, 817, 844, 967 |
| CviQI | GTAC | 2 cut(s) | 1176, 1182 |
| DdeI | CTNAG | 3 cut(s) | 443, 712, 751 |
| DpnI | GATC | 5 cut(s) | 27, 645, 1036, 1054, 1070 |
| DpnII | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| DraI | TTTAAA | 2 cut(s) | 741, 810 |
| Eam1104I | CTCTTC | 2 cut(s) | 270, 819 |
| EarI | CTCTTC | 2 cut(s) | 270, 819 |
| Eco32I | GATATC | 1 cut(s) | 518 |
| Eco47I | GGWCC | 1 cut(s) | 563 |
| Eco57I | CTGAAG | 1 cut(s) | 868 |
| Eco88I | CYCGRG | 1 cut(s) | 221 |
| EcoO109I | RGGNCCY | 1 cut(s) | 563 |
| EcoRI | GAATTC | 1 cut(s) | 856 |
| EcoRII | CCWGG | 2 cut(s) | 336, 1137 |
| EcoRV | GATATC | 1 cut(s) | 518 |
| EcoT22I | ATGCAT | 1 cut(s) | 419 |
| FaeI | CATG | 9 cut(s) | 67, 293, 421, 572, 686, 791, 820, 847, 970 |
| FaqI | GGGAC | 1 cut(s) | 1095 |
| FatI | CATG | 9 cut(s) | 63, 289, 417, 568, 682, 787, 816, 843, 966 |
| FauNDI | CATATG | 2 cut(s) | 507, 1094 |
| Fnu4HI | GCNGC | 3 cut(s) | 384, 1145, 1159 |
| FokI | GGATG | 3 cut(s) | 197, 204, 586 |
| Fsp4HI | GCNGC | 3 cut(s) | 384, 1145, 1159 |
| GluI | GCNGC | 3 cut(s) | 384, 1145, 1159 |
| GsaI | CCCAGC | 2 cut(s) | 288, 1103 |
| GsuI | CTGGAG | 1 cut(s) | 519 |
| HgaI | GACGC | 2 cut(s) | 628, 860 |
| Hin1II | CATG | 9 cut(s) | 67, 293, 421, 572, 686, 791, 820, 847, 970 |
| HincII | GTYRAC | 2 cut(s) | 748, 957 |
| HindII | GTYRAC | 2 cut(s) | 748, 957 |
| HinfI | GANTC | 2 cut(s) | 241, 756 |
| HpaI | GTTAAC | 1 cut(s) | 748 |
| HphI | GGTGA | 2 cut(s) | 194, 371 |
| Hpy166II | GTNNAC | 4 cut(s) | 481, 748, 957, 1165 |
| Hpy188III | TCNNGA | 6 cut(s) | 23, 64, 221, 452, 753, 1007 |
| Hpy8I | GTNNAC | 4 cut(s) | 481, 748, 957, 1165 |
| Hpy99I | CGWCG | 1 cut(s) | 644 |
| HpyAV | CCTTC | 1 cut(s) | 690 |
| HpyCH4III | ACNGT | 3 cut(s) | 146, 661, 1075 |
| HpyCH4IV | ACGT | 4 cut(s) | 55, 157, 465, 763 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 176, 233, 281, 383, 941, 1158 |
| HpyF3I | CTNAG | 3 cut(s) | 443, 712, 751 |
| HpySE526I | ACGT | 4 cut(s) | 55, 157, 465, 763 |
| Hsp92II | CATG | 9 cut(s) | 67, 293, 421, 572, 686, 791, 820, 847, 970 |
| KspAI | GTTAAC | 1 cut(s) | 748 |
| Kzo9I | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| LguI | GCTCTTC | 1 cut(s) | 270 |
| Lsp1109I | GCAGC | 3 cut(s) | 370, 1156, 1170 |
| LweI | GCATC | 3 cut(s) | 271, 445, 1145 |
| MaeII | ACGT | 4 cut(s) | 55, 157, 465, 763 |
| MaeIII | GTNAC | 3 cut(s) | 421, 529, 655 |
| MalI | GATC | 5 cut(s) | 27, 645, 1036, 1054, 1070 |
| MbiI | CCGCTC | 1 cut(s) | 795 |
| MboI | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| MboII | GAAGA | 8 cut(s) | 257, 344, 554, 683, 790, 836, 852, 874 |
| MflI | RGATCY | 2 cut(s) | 1034, 1052 |
| MmeI | TCCRAC | 1 cut(s) | 238 |
| MnlI | CCTC | 9 cut(s) | 17, 20, 160, 217, 576, 639, 642, 645, 892 |
| Mph1103I | ATGCAT | 1 cut(s) | 419 |
| MseI | TTAA | 6 cut(s) | 548, 704, 740, 747, 809, 1127 |
| MslI | CAYNNNNRTG | 1 cut(s) | 949 |
| MspR9I | CCNGG | 2 cut(s) | 338, 1139 |
| Mva1269I | GAATGC | 2 cut(s) | 419, 447 |
| MvaI | CCWGG | 2 cut(s) | 338, 1139 |
| MvnI | CGCG | 1 cut(s) | 639 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 176, 233, 281, 383, 941, 1158 |
| NdeI | CATATG | 2 cut(s) | 507, 1094 |
| NdeII | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| NlaIII | CATG | 9 cut(s) | 67, 293, 421, 572, 686, 791, 820, 847, 970 |
| NmuCI | GTSAC | 1 cut(s) | 529 |
| NsiI | ATGCAT | 1 cut(s) | 419 |
| NspI | RCATGY | 3 cut(s) | 293, 847, 970 |
| OliI | CACNNNNGTG | 1 cut(s) | 949 |
| PagI | TCATGA | 1 cut(s) | 63 |
| PaqCI | CACCTGC | 1 cut(s) | 1125 |
| PciI | ACATGT | 1 cut(s) | 966 |
| PciSI | GCTCTTC | 1 cut(s) | 270 |
| PctI | GAATGC | 2 cut(s) | 419, 447 |
| PfeI | GAWTC | 2 cut(s) | 241, 756 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 251 |
| PkrI | GCNGC | 3 cut(s) | 385, 1146, 1160 |
| PpuMI | RGGWCCY | 1 cut(s) | 563 |
| PscI | ACATGT | 1 cut(s) | 966 |
| PsiI | TTATAA | 2 cut(s) | 495, 1019 |
| Psp1406I | AACGTT | 1 cut(s) | 157 |
| Psp5II | RGGWCCY | 1 cut(s) | 563 |
| Psp6I | CCWGG | 2 cut(s) | 336, 1137 |
| PspFI | CCCAGC | 2 cut(s) | 284, 1099 |
| PspGI | CCWGG | 2 cut(s) | 336, 1137 |
| PspPI | GGNCC | 1 cut(s) | 563 |
| PspPPI | RGGWCCY | 1 cut(s) | 563 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1174, 1206 |
| PsuI | RGATCY | 2 cut(s) | 1034, 1052 |
| RsaI | GTAC | 2 cut(s) | 1177, 1183 |
| RsaNI | GTAC | 2 cut(s) | 1176, 1182 |
| RseI | CAYNNNNRTG | 1 cut(s) | 949 |
| SapI | GCTCTTC | 1 cut(s) | 270 |
| SaqAI | TTAA | 6 cut(s) | 548, 704, 740, 747, 809, 1127 |
| SatI | GCNGC | 3 cut(s) | 384, 1145, 1159 |
| Sau3AI | GATC | 5 cut(s) | 25, 643, 1034, 1052, 1068 |
| Sau96I | GGNCC | 1 cut(s) | 563 |
| ScrFI | CCNGG | 2 cut(s) | 338, 1139 |
| SfaNI | GCATC | 3 cut(s) | 271, 445, 1145 |
| SinI | GGWCC | 1 cut(s) | 563 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 949 |
| SmlI | CTYRAG | 1 cut(s) | 93 |
| SmoI | CTYRAG | 1 cut(s) | 93 |
| SsiI | CCGC | 1 cut(s) | 793 |
| StyD4I | CCNGG | 2 cut(s) | 336, 1137 |
| TaaI | ACNGT | 3 cut(s) | 146, 661, 1075 |
| TaiI | ACGT | 4 cut(s) | 58, 160, 468, 766 |
| TaqI | TCGA | 4 cut(s) | 514, 642, 840, 996 |
| TfiI | GAWTC | 2 cut(s) | 241, 756 |
| Tru1I | TTAA | 6 cut(s) | 548, 704, 740, 747, 809, 1127 |
| Tru9I | TTAA | 6 cut(s) | 548, 704, 740, 747, 809, 1127 |
| TscAI | CASTG | 2 cut(s) | 892, 1080 |
| TseFI | GTSAC | 1 cut(s) | 529 |
| TseI | GCWGC | 3 cut(s) | 383, 1144, 1158 |
| Tsp45I | GTSAC | 1 cut(s) | 529 |
| TspDTI | ATGAA | 6 cut(s) | 52, 588, 684, 786, 791, 869 |
| TspGWI | ACGGA | 2 cut(s) | 517, 708 |
| TspRI | CASTG | 2 cut(s) | 892, 1080 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 1 cut(s) | 563 |
| XapI | RAATTY | 5 cut(s) | 124, 346, 608, 676, 856 |
| XceI | RCATGY | 3 cut(s) | 293, 847, 970 |
| Zsp2I | ATGCAT | 1 cut(s) | 419 |