Rh1BG141300

Domain of unknown function

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
23550667 .. 23568012
17346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG141300.1

Sequence Viewer

Length: 2169 bp
ATGGAAGCTACAGTTGCCCCAAGTGCAATCGTTCTTGAAGTTCTCAACGAAGACAACTACGAAGAATGGAGTGTTTGGGTTAAGACCTACTTGGTGGCTCATGATCTTTGGGACATTGTCGAAACCGGCGGTGACCTCCCTGAACCAAGTCAACTATTTAAGAATCTGAGGAGGAAGAATGCCCAAGCTCTGCACGCAATTCAGATTTCTTGCGGACTGGACGCTTTTTCTCTGATCAAGAATGTCACCACCGCCAAAGAAGCTTGGGATACCTTGTTGACTGCAAAGCAACAGCAAAATTCGTCAAGACCGCAAGGTTTTCTATATGATCCAGGATTTGGGTCTGATGCCAGCAACTTCGACGAGTATGAACCTTTCTTTAAAGCTGTGGAGGACGGTGATTGGGAAGCAGCGCATGGGTTGCTTACAACGCATCCTGATGCAATAAGAGCAAGAATTCCATATTCAGGCAGGACAGCTCTTCACATTGCAACTGATGCTGGACGCCCACATATAGTGGAACAGTTGGTGCACTTGATGCCAGAAGAGTACTTGGAAATAAGAGGAGATGATGGCATGACAGCTCTAGCTGCGGCTGCAAATAAAGGATTCACTCGAATGGCTAAATGCATGGTTTGGAAGAACAAGAGAATTCTTAGCATTGGCGACGCTTCAAATAGAATTCCACTTGTCCTAGCTTATCGCATGGGTCATTTGAATATGGCTCGCTATCTATACTGTGTCACTCCACGGGAAGATTTAATGCCAGAGACAGGCCCAAATGGCGCTACAATTGTTTCCGAATGTTTCATTGAAAGAAAATTTGATATTGCCTGGGCTTTAATTCAGCGTTTCCCGCGCTTGGCCATATCTAGAGACCATTATGATATAACCCCTTTATATGCGTTGTCCGGTGTGCCATCAGCATTCCTGAGTGGAATGAAGCTCAGATTGTGGCAGCGATGGATCTATAACTGTATAAAGATACAACCTGCTCCTTTGGCAGCCAATGATATTTATATAAATGTTGGTAATATGGAAAATAACGAAGGTAATCGAAGAGATTTCGGATCAGTTTCAGGTATCTGTCATATCCTACTTGAGAAGCTTCTCAGTATATTGGGAATAAGCCACCTACGGAACATGAAACTGATTCATAAACGATCTAGCGAGTTTTTGGTTCACATGTGCAAGACAATAAAACATTTAGATAGGAGTGAACTGCAAACTGCCGGTGTAAATAAAGCTATTTTCCAAGCCGTTGAACGAGGGATTTCTGAGTTCATTACTCATATATTGATGACAAGACCAGAACTTGTGCGGAGTACTAATGAAAAGAACAGGAGCATATTTCATGTGGCAGTTGAGTATCGCCAAGAAAAAATTTATAATCTTATATATGGACTCCGTACGAAAGATGTATTTGCAACTCACGTGGATACATCGAATAATAATATGCTACATATGGCAGCAATGTTGCCCCCTTCTGAGGAGCTTAATGGTATCACGGGTGCAGCTTTGAAAATGCAGAGAGAACTCCAATGGTTCAAGGAGGTGGAGAGGATTGTACCTTCCCAATATCGGGAAAAAATGAATCACACTGATTGTAAGAGACCAGGCGATCTATTTACCATCCACCACAAGAAGTTAGTGGAGGAGGGAGAAAAGTGGATGAAAGATACCGCACGGTCTTGTTCCGTCGTTGGTGCTCTCATTGTAACCATTATGTTTGCTGCAGCGTTCACAGTTCCGGGAGGCAATAATCAAAATTCAGGCATTCCCATATTCATCAATGACAAGATATTTGGTCTTTTTATAATCTCAGATGCTATATCACTCTTTTCTTCCACAACTGCATCATTGATGTTCTTGGAAATCATGACATCACGCTATGCAGAAGAAGATTTCCTCAAGTCTTTGCCGACAAAGATGTTAATAGGCCTTTTCAGCCTATTTCTCTCTATCGCTACCATGATGCTAGCATTTTGTGCTGCGCTTCTCATTATGCTTAGAGGAAAGCCGTGGACTGTCTTTCCAGTTATTTCTCTTGCTAGTGTTCCGGTCAGCTTATTTGTTTGCATGAAATTTCCTCTCTTTATTGAGATTTTCAGTAATACGTATCGATCAAGATCAAGAGTATTCAATAGGGATGTCAAACCTTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

722

Amino Acids

81.74

Weight (kDa)

8.16

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 15 - 41 1.1e-08 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 28 - 93 6.9e-07 gag-polypeptide of LTR copia-type
PGG PF13962 555 - 668 3.9e-26 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1389, 1817
Acc36I ACCTGC 1 cut(s) 1000
AccB7I CCANNNNNTGG 1 cut(s) 338
AccII CGCG 1 cut(s) 859
AciI CCGC 8 cut(s) 129, 213, 252, 311, 593, 857, 1321, 1683
AclWI GGATC 3 cut(s) 323, 974, 1078
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 8 cut(s) 298, 456, 651, 681, 821, 1383, 1768, 2084
AcvI CACGTG 1 cut(s) 1435
AcyI GRCGYC 1 cut(s) 505
AfaI GTAC 4 cut(s) 551, 1327, 1411, 1569
AfiI CCNNNNNNNGG 7 cut(s) 338, 467, 773, 862, 1489, 1581, 1582
AflIII ACRYGT 1 cut(s) 1185
AgsI TTSAA 8 cut(s) 38, 675, 718, 815, 1265, 1522, 1549, 2143
AjnI CCWGG 3 cut(s) 331, 833, 1615
Alw21I GWGCWC 2 cut(s) 534, 1711
Alw26I GTCTC 3 cut(s) 764, 870, 1606
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 3 cut(s) 323, 974, 1078
AoxI GGCC 3 cut(s) 775, 864, 1939
ApaLI GTGCAC 1 cut(s) 530
ApoI RAATTY 8 cut(s) 298, 456, 651, 681, 821, 1383, 1768, 2084
ArsI GACNNNNNNTTYG 2 cut(s) 1787, 1819
AspLEI GCGC 4 cut(s) 415, 788, 861, 1996
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 1752
AsuHPI GGTGA 3 cut(s) 143, 238, 410
AsuNHI GCTAGC 1 cut(s) 1978
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 866
BbrPI CACGTG 1 cut(s) 1435
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 534, 1711
BccI CCATC 4 cut(s) 566, 928, 957, 1640
BceAI ACGGC 2 cut(s) 1244, 2005
BciT130I CCWGG 3 cut(s) 333, 835, 1617
BciVI GTATCC 2 cut(s) 262, 1432
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 1 cut(s) 1752
BcoDI GTCTC 3 cut(s) 764, 870, 1606
BfaI CTAG 6 cut(s) 587, 695, 873, 1167, 1979, 2052
BfmI CTRYAG 2 cut(s) 9, 1734
BfoI RGCGCY 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 1000
BfuI GTATCC 2 cut(s) 262, 1432
BglI GCCNNNNNGGC 1 cut(s) 783
BmcAI AGTACT 2 cut(s) 551, 1327
Bme1390I CCNGG 4 cut(s) 333, 835, 1617, 1752
BmgT120I GGNCC 1 cut(s) 776
BmrFI CCNGG 4 cut(s) 333, 835, 1617, 1752
BmsI GCATC 8 cut(s) 337, 430, 442, 487, 528, 1816, 1865, 1965
BmtI GCTAGC 1 cut(s) 1982
BpiI GAAGAC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 1121, 1895
BpuMI CCSGG 1 cut(s) 1752
Bsa29I ATCGAT 1 cut(s) 2122
BsaAI YACGTR 2 cut(s) 1435, 2118
BsaBI GATNNNNATC 1 cut(s) 2128
BsaHI GRCGYC 1 cut(s) 505
BsaI GGTCTC 2 cut(s) 870, 1606
BsaJI CCNNGG 4 cut(s) 749, 834, 2021, 2159
BsaWI WCCGGW 2 cut(s) 911, 2059
Bsc4I CCNNNNNNNGG 7 cut(s) 338, 467, 773, 862, 1489, 1581, 1582
Bse118I RCCGGY 2 cut(s) 125, 1232
Bse1I ACTGG 2 cut(s) 222, 2036
Bse3DI GCAATG 2 cut(s) 486, 1479
Bse8I GATNNNNATC 1 cut(s) 2128
BseBI CCWGG 3 cut(s) 333, 835, 1617
BseCI ATCGAT 1 cut(s) 2122
BseDI CCNNGG 4 cut(s) 749, 834, 2021, 2159
BseGI GGATG 4 cut(s) 433, 1632, 1677, 2155
BseJI GATNNNNATC 1 cut(s) 2128
BseLI CCNNNNNNNGG 7 cut(s) 338, 467, 773, 862, 1489, 1581, 1582
BseMI GCAATG 2 cut(s) 486, 1479
BseMII CTCAG 7 cut(s) 158, 923, 961, 1126, 1269, 1479, 1836
BseNI ACTGG 2 cut(s) 222, 2036
BseRI GAGGAG 4 cut(s) 184, 579, 1505, 1670
BseSI GKGCMC 1 cut(s) 534
BsgI GTGCAG 2 cut(s) 176, 1533
Bsh1236I CGCG 1 cut(s) 859
BshFI GGCC 3 cut(s) 777, 866, 1941
BshVI ATCGAT 1 cut(s) 2122
BsiHKAI GWGCWC 2 cut(s) 534, 1711
BsiSI CCGG 5 cut(s) 126, 912, 1233, 1751, 2060
BsiWI CGTACG 1 cut(s) 1409
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 7 cut(s) 338, 467, 773, 862, 1489, 1581, 1582
BsmAI GTCTC 3 cut(s) 764, 870, 1606
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 3 cut(s) 184, 926, 1776
BsnI GGCC 3 cut(s) 777, 866, 1941
Bso31I GGTCTC 2 cut(s) 870, 1606
Bsp1286I GDGCHC 2 cut(s) 534, 1711
Bsp143I GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
BspACI CCGC 8 cut(s) 129, 213, 252, 311, 593, 857, 1321, 1683
BspANI GGCC 3 cut(s) 777, 866, 1941
BspCNI CTCAG 7 cut(s) 159, 924, 960, 1125, 1270, 1480, 1835
BspDI ATCGAT 1 cut(s) 2122
BspFNI CGCG 1 cut(s) 859
BspHI TCATGA 2 cut(s) 100, 1878
BspMAI CTGCAG 1 cut(s) 1738
BspMI ACCTGC 1 cut(s) 1000
BspOI GCTAGC 1 cut(s) 1982
BspPI GGATC 3 cut(s) 323, 974, 1078
BspQI GCTCTTC 1 cut(s) 486
BspTNI GGTCTC 2 cut(s) 870, 1606
BsrDI GCAATG 2 cut(s) 486, 1479
BsrFI RCCGGY 2 cut(s) 125, 1232
BsrI ACTGG 2 cut(s) 222, 2036
BssAI RCCGGY 2 cut(s) 125, 1232
BssECI CCNNGG 4 cut(s) 749, 834, 2021, 2159
BssMI GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 2159
Bst2UI CCWGG 3 cut(s) 333, 835, 1617
Bst4CI ACNGT 8 cut(s) 13, 398, 525, 740, 977, 1689, 1747, 2029
Bst6I CTCTTC 3 cut(s) 486, 540, 1054
BstACI GRCGYC 1 cut(s) 505
BstAPI GCANNNNNTGC 4 cut(s) 421, 497, 538, 1988
BstBAI YACGTR 2 cut(s) 1435, 2118
BstC8I GCNNGC 4 cut(s) 195, 352, 727, 1980
BstDEI CTNAG 9 cut(s) 167, 656, 932, 947, 1112, 1278, 1488, 1822, 2009
BstDSI CCRYGG 2 cut(s) 749, 2021
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 4 cut(s) 433, 1632, 1677, 2155
BstFNI CGCG 1 cut(s) 859
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 4 cut(s) 415, 788, 861, 1996
BstKTI GATC 9 cut(s) 106, 237, 331, 969, 1073, 1166, 1624, 2126, 2132
BstMAI GTCTC 3 cut(s) 764, 870, 1606
BstMBI GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
BstNI CCWGG 3 cut(s) 333, 835, 1617
BstNSI RCATGY 1 cut(s) 1189
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 4 cut(s) 331, 833, 1615, 1750
BstSFI CTRYAG 2 cut(s) 9, 1734
BstSLI GKGCMC 1 cut(s) 534
BstSNI TACGTA 1 cut(s) 2118
BstUI CGCG 1 cut(s) 859
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 966
BstYI RGATCY 1 cut(s) 966
Bsu15I ATCGAT 1 cut(s) 2122
BsuI GTATCC 2 cut(s) 262, 1432
BsuRI GGCC 3 cut(s) 777, 866, 1941
BsuTUI ATCGAT 1 cut(s) 2122
BtgI CCRYGG 2 cut(s) 749, 2021
BtgZI GCGATG 1 cut(s) 976
BtsCI GGATG 4 cut(s) 433, 1632, 1677, 2155
BtsIMutI CAGTG 1 cut(s) 1599
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 4 cut(s) 195, 352, 727, 1980
CciI TCATGA 2 cut(s) 100, 1878
CfoI GCGC 4 cut(s) 415, 788, 861, 1996
Cfr10I RCCGGY 2 cut(s) 125, 1232
Cfr13I GGNCC 1 cut(s) 776
ClaI ATCGAT 1 cut(s) 2122
CseI GACGC 3 cut(s) 230, 513, 677
Csp6I GTAC 4 cut(s) 550, 1326, 1410, 1568
CspCI CAANNNNNGTGG 2 cut(s) 1416, 1451
CviQI GTAC 4 cut(s) 550, 1326, 1410, 1568
DdeI CTNAG 9 cut(s) 167, 656, 932, 947, 1112, 1278, 1488, 1822, 2009
DpnI GATC 9 cut(s) 105, 236, 330, 968, 1072, 1165, 1623, 2125, 2131
DpnII GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
DraI TTTAAA 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 3 cut(s) 486, 540, 1054
EarI CTCTTC 3 cut(s) 486, 540, 1054
Eco105I TACGTA 1 cut(s) 2118
Eco130I CCWWGG 1 cut(s) 2159
Eco147I AGGCCT 1 cut(s) 1941
Eco31I GGTCTC 2 cut(s) 870, 1606
Eco72I CACGTG 1 cut(s) 1435
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRI GAATTC 3 cut(s) 456, 651, 681
EcoRII CCWGG 3 cut(s) 331, 833, 1615
EcoT14I CCWWGG 1 cut(s) 2159
EcoT22I ATGCAT 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 2159
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 125
FauI CCCGC 1 cut(s) 864
FauNDI CATATG 1 cut(s) 1464
FbaI TGATCA 1 cut(s) 234
FokI GGATG 4 cut(s) 420, 1619, 1684, 2162
FspBI CTAG 6 cut(s) 587, 695, 873, 1167, 1979, 2052
GlaI GCGC 4 cut(s) 414, 787, 860, 1995
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 3 cut(s) 777, 866, 1941
HapII CCGG 5 cut(s) 126, 912, 1233, 1751, 2060
HgaI GACGC 3 cut(s) 230, 513, 677
HhaI GCGC 4 cut(s) 415, 788, 861, 1996
Hin1I GRCGYC 1 cut(s) 505
Hin6I GCGC 4 cut(s) 413, 786, 859, 1994
HinP1I GCGC 4 cut(s) 413, 786, 859, 1994
HincII GTYRAC 2 cut(s) 152, 279
HindII GTYRAC 2 cut(s) 152, 279
HindIII AAGCTT 2 cut(s) 261, 1106
HinfI GANTC 5 cut(s) 163, 609, 1153, 1404, 1594
HpaII CCGG 5 cut(s) 126, 912, 1233, 1751, 2060
HphI GGTGA 3 cut(s) 143, 238, 410
Hpy166II GTNNAC 7 cut(s) 152, 279, 532, 1183, 1220, 1743, 2025
Hpy8I GTNNAC 7 cut(s) 152, 279, 532, 1183, 1220, 1743, 2025
Hpy99I CGWCG 3 cut(s) 365, 671, 1703
HpyAV CCTTC 3 cut(s) 1043, 1494, 1581
HpyCH4III ACNGT 8 cut(s) 13, 398, 525, 740, 977, 1689, 1747, 2029
HpyCH4IV ACGT 2 cut(s) 1434, 2117
HpyF3I CTNAG 9 cut(s) 167, 656, 932, 947, 1112, 1278, 1488, 1822, 2009
HpySE526I ACGT 2 cut(s) 1434, 2117
Hsp92I GRCGYC 1 cut(s) 505
HspAI GCGC 4 cut(s) 413, 786, 859, 1994
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 3 cut(s) 1000, 1344, 1492
LweI GCATC 8 cut(s) 337, 430, 442, 487, 528, 1816, 1865, 1965
MaeI CTAG 6 cut(s) 587, 695, 873, 1167, 1979, 2052
MaeII ACGT 2 cut(s) 1434, 2117
MaeIII GTNAC 4 cut(s) 131, 244, 742, 1717
MalI GATC 9 cut(s) 105, 236, 330, 968, 1072, 1165, 1623, 2125, 2131
MboI GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 1 cut(s) 966
MhlI GDGCHC 2 cut(s) 534, 1711
MlsI TGGCCA 1 cut(s) 866
MluNI TGGCCA 1 cut(s) 866
MlyI GAGTC 1 cut(s) 1398
Mox20I TGGCCA 1 cut(s) 866
Mph1103I ATGCAT 1 cut(s) 632
MscI TGGCCA 1 cut(s) 866
MseI TTAA 7 cut(s) 81, 159, 381, 761, 842, 1497, 1934
MslI CAYNNNNRTG 2 cut(s) 438, 617
Msp20I TGGCCA 1 cut(s) 866
MspI CCGG 5 cut(s) 126, 912, 1233, 1751, 2060
MspR9I CCNGG 4 cut(s) 333, 835, 1617, 1752
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 3 cut(s) 184, 926, 1776
MvaI CCWGG 3 cut(s) 333, 835, 1617
MvnI CGCG 1 cut(s) 859
NciI CCSGG 1 cut(s) 1752
NdeI CATATG 1 cut(s) 1464
NdeII GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
NheI GCTAGC 1 cut(s) 1978
NmuCI GTSAC 3 cut(s) 131, 244, 742
NsiI ATGCAT 1 cut(s) 632
NspI RCATGY 1 cut(s) 1189
PagI TCATGA 2 cut(s) 100, 1878
PceI AGGCCT 1 cut(s) 1941
PciI ACATGT 1 cut(s) 1185
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 3 cut(s) 184, 926, 1776
PfeI GAWTC 4 cut(s) 163, 609, 1153, 1594
Pfl23II CGTACG 1 cut(s) 1409
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 338
PfoI TCCNGGA 2 cut(s) 331, 1750
PleI GAGTC 1 cut(s) 1398
PmaCI CACGTG 1 cut(s) 1435
PmlI CACGTG 1 cut(s) 1435
PpsI GAGTC 1 cut(s) 1398
Ppu21I YACGTR 2 cut(s) 1435, 2118
PscI ACATGT 1 cut(s) 1185
PsiI TTATAA 2 cut(s) 1389, 1817
Psp6I CCWGG 3 cut(s) 331, 833, 1615
PspCI CACGTG 1 cut(s) 1435
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 3 cut(s) 331, 833, 1615
PspLI CGTACG 1 cut(s) 1409
PspPI GGNCC 1 cut(s) 776
PstI CTGCAG 1 cut(s) 1738
PsuI RGATCY 1 cut(s) 966
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 4 cut(s) 551, 1327, 1411, 1569
RsaNI GTAC 4 cut(s) 550, 1326, 1410, 1568
RseI CAYNNNNRTG 2 cut(s) 438, 617
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 7 cut(s) 81, 159, 381, 761, 842, 1497, 1934
Sau3AI GATC 9 cut(s) 103, 234, 328, 966, 1070, 1163, 1621, 2123, 2129
Sau96I GGNCC 1 cut(s) 776
ScaI AGTACT 2 cut(s) 551, 1327
SchI GAGTC 1 cut(s) 1398
ScrFI CCNGG 4 cut(s) 333, 835, 1617, 1752
SduI GDGCHC 2 cut(s) 534, 1711
SfaNI GCATC 8 cut(s) 337, 430, 442, 487, 528, 1816, 1865, 1965
SfcI CTRYAG 2 cut(s) 9, 1734
SmiMI CAYNNNNRTG 2 cut(s) 438, 617
SmlI CTYRAG 2 cut(s) 1100, 1910
SmoI CTYRAG 2 cut(s) 1100, 1910
SnaBI TACGTA 1 cut(s) 2118
SseBI AGGCCT 1 cut(s) 1941
SsiI CCGC 8 cut(s) 129, 213, 252, 311, 593, 857, 1321, 1683
SspMI CTAG 6 cut(s) 587, 695, 873, 1167, 1979, 2052
StuI AGGCCT 1 cut(s) 1941
StyD4I CCNGG 4 cut(s) 331, 833, 1615, 1750
StyI CCWWGG 1 cut(s) 2159
TaaI ACNGT 8 cut(s) 13, 398, 525, 740, 977, 1689, 1747, 2029
TaiI ACGT 2 cut(s) 1437, 2120
TaqI TCGA 6 cut(s) 120, 360, 616, 1057, 1445, 2122
TatI WGTACW 2 cut(s) 549, 1325
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 4 cut(s) 163, 609, 1153, 1594
Tru1I TTAA 7 cut(s) 81, 159, 381, 761, 842, 1497, 1934
Tru9I TTAA 7 cut(s) 81, 159, 381, 761, 842, 1497, 1934
TscAI CASTG 1 cut(s) 1606
TseFI GTSAC 3 cut(s) 131, 244, 742
Tsp45I GTSAC 3 cut(s) 131, 244, 742
TspGWI ACGGA 3 cut(s) 1153, 1397, 1687
TspRI CASTG 1 cut(s) 1606
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 338
VneI GTGCAC 1 cut(s) 530
XapI RAATTY 8 cut(s) 298, 456, 651, 681, 821, 1383, 1768, 2084
XbaI TCTAGA 1 cut(s) 872
XceI RCATGY 1 cut(s) 1189
XspI CTAG 6 cut(s) 587, 695, 873, 1167, 1979, 2052
ZrmI AGTACT 2 cut(s) 551, 1327
Zsp2I ATGCAT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.