protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 72 - 184 | 4.1e-26 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 27 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 705 |
| AccII | CGCG | 1 cut(s) | 436 |
| AciI | CCGC | 1 cut(s) | 282 |
| AcuI | CTGAAG | 1 cut(s) | 387 |
| AfaI | GTAC | 1 cut(s) | 244 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 705 |
| AflIII | ACRYGT | 1 cut(s) | 145 |
| AgsI | TTSAA | 1 cut(s) | 396 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 165 |
| AjnI | CCWGG | 2 cut(s) | 298, 676 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 556, 588 |
| AluBI | AGCT | 1 cut(s) | 164 |
| AluI | AGCT | 1 cut(s) | 164 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 299 |
| AoxI | GGCC | 2 cut(s) | 487, 674 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| AspS9I | GGNCC | 1 cut(s) | 674 |
| BauI | CACGAG | 1 cut(s) | 188 |
| BbsI | GAAGAC | 2 cut(s) | 384, 453 |
| BbvI | GCAGC | 1 cut(s) | 296 |
| BceAI | ACGGC | 1 cut(s) | 246 |
| BciT130I | CCWGG | 2 cut(s) | 300, 678 |
| BfaI | CTAG | 1 cut(s) | 471 |
| BfmI | CTRYAG | 1 cut(s) | 136 |
| BisI | GCNGC | 2 cut(s) | 282, 285 |
| BlsI | GCNGC | 2 cut(s) | 283, 286 |
| Bme1390I | CCNGG | 2 cut(s) | 300, 678 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 165 |
| BmgT120I | GGNCC | 1 cut(s) | 674 |
| BmrFI | CCNGG | 2 cut(s) | 300, 678 |
| BmsI | GCATC | 1 cut(s) | 333 |
| BpiI | GAAGAC | 2 cut(s) | 384, 453 |
| BsaJI | CCNNGG | 1 cut(s) | 704 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 705 |
| Bse3DI | GCAATG | 1 cut(s) | 261 |
| BseBI | CCWGG | 2 cut(s) | 300, 678 |
| BseDI | CCNNGG | 1 cut(s) | 704 |
| BseGI | GGATG | 1 cut(s) | 324 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 705 |
| BseMI | GCAATG | 1 cut(s) | 261 |
| BseXI | GCAGC | 1 cut(s) | 296 |
| BsgI | GTGCAG | 1 cut(s) | 653 |
| Bsh1236I | CGCG | 1 cut(s) | 436 |
| BshFI | GGCC | 2 cut(s) | 489, 676 |
| BslFI | GGGAC | 1 cut(s) | 435 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 705 |
| BsmFI | GGGAC | 1 cut(s) | 435 |
| BsmI | GAATGC | 1 cut(s) | 287 |
| BsnI | GGCC | 2 cut(s) | 489, 676 |
| Bsp1407I | TGTACA | 1 cut(s) | 242 |
| Bsp143I | GATC | 2 cut(s) | 273, 525 |
| BspACI | CCGC | 1 cut(s) | 282 |
| BspANI | GGCC | 2 cut(s) | 489, 676 |
| BspFNI | CGCG | 1 cut(s) | 436 |
| BsrDI | GCAATG | 1 cut(s) | 261 |
| BsrGI | TGTACA | 1 cut(s) | 242 |
| BssECI | CCNNGG | 1 cut(s) | 704 |
| BssMI | GATC | 2 cut(s) | 273, 525 |
| BssSI | CACGAG | 1 cut(s) | 188 |
| BssT1I | CCWWGG | 1 cut(s) | 704 |
| Bst2BI | CACGAG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 2 cut(s) | 300, 678 |
| Bst4CI | ACNGT | 3 cut(s) | 247, 295, 572 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstAUI | TGTACA | 1 cut(s) | 242 |
| BstDEI | CTNAG | 1 cut(s) | 650 |
| BstF5I | GGATG | 1 cut(s) | 324 |
| BstFNI | CGCG | 1 cut(s) | 436 |
| BstKTI | GATC | 2 cut(s) | 276, 528 |
| BstMBI | GATC | 2 cut(s) | 273, 525 |
| BstNI | CCWGG | 2 cut(s) | 300, 678 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 2 cut(s) | 298, 676 |
| BstSFI | CTRYAG | 1 cut(s) | 136 |
| BstUI | CGCG | 1 cut(s) | 436 |
| BstV1I | GCAGC | 1 cut(s) | 296 |
| BstV2I | GAAGAC | 2 cut(s) | 384, 453 |
| BsuRI | GGCC | 2 cut(s) | 489, 676 |
| BtgZI | GCGATG | 1 cut(s) | 417 |
| BtsCI | GGATG | 1 cut(s) | 324 |
| BtsIMutI | CAGTG | 2 cut(s) | 225, 411 |
| CaiI | CAGNNNCTG | 1 cut(s) | 299 |
| Cfr13I | GGNCC | 1 cut(s) | 674 |
| Csp6I | GTAC | 1 cut(s) | 243 |
| CviAII | CATG | 5 cut(s) | 146, 271, 331, 520, 560 |
| CviJI | RGCY | 3 cut(s) | 164, 489, 676 |
| CviKI_1 | RGCY | 3 cut(s) | 164, 489, 676 |
| CviQI | GTAC | 1 cut(s) | 243 |
| DdeI | CTNAG | 1 cut(s) | 650 |
| DpnI | GATC | 2 cut(s) | 275, 527 |
| DpnII | GATC | 2 cut(s) | 273, 525 |
| DriI | GACNNNNNGTC | 1 cut(s) | 165 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 165 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 1 cut(s) | 704 |
| Eco57I | CTGAAG | 1 cut(s) | 387 |
| EcoRII | CCWGG | 2 cut(s) | 298, 676 |
| EcoT14I | CCWWGG | 1 cut(s) | 704 |
| ErhI | CCWWGG | 1 cut(s) | 704 |
| FaeI | CATG | 5 cut(s) | 149, 274, 334, 523, 563 |
| FaqI | GGGAC | 1 cut(s) | 435 |
| FatI | CATG | 5 cut(s) | 145, 270, 330, 519, 559 |
| Fnu4HI | GCNGC | 2 cut(s) | 282, 285 |
| FokI | GGATG | 1 cut(s) | 311 |
| Fsp4HI | GCNGC | 2 cut(s) | 282, 285 |
| FspBI | CTAG | 1 cut(s) | 471 |
| GluI | GCNGC | 2 cut(s) | 282, 285 |
| HaeIII | GGCC | 2 cut(s) | 489, 676 |
| Hin1II | CATG | 5 cut(s) | 149, 274, 334, 523, 563 |
| HincII | GTYRAC | 1 cut(s) | 170 |
| HindII | GTYRAC | 1 cut(s) | 170 |
| HinfI | GANTC | 2 cut(s) | 184, 423 |
| Hpy166II | GTNNAC | 1 cut(s) | 170 |
| Hpy188I | TCNGA | 2 cut(s) | 373, 588 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 188 |
| Hpy8I | GTNNAC | 1 cut(s) | 170 |
| HpyAV | CCTTC | 2 cut(s) | 500, 656 |
| HpyCH4III | ACNGT | 3 cut(s) | 247, 295, 572 |
| HpyCH4V | TGCA | 3 cut(s) | 97, 443, 634 |
| HpyF3I | CTNAG | 1 cut(s) | 650 |
| Hsp92II | CATG | 5 cut(s) | 149, 274, 334, 523, 563 |
| Kzo9I | GATC | 2 cut(s) | 273, 525 |
| LmnI | GCTCC | 1 cut(s) | 589 |
| LpnPI | CCDG | 8 cut(s) | 83, 124, 135, 285, 306, 312, 663, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 296 |
| LweI | GCATC | 1 cut(s) | 333 |
| MaeI | CTAG | 1 cut(s) | 471 |
| MaeIII | GTNAC | 1 cut(s) | 185 |
| MalI | GATC | 2 cut(s) | 275, 527 |
| MboI | GATC | 2 cut(s) | 273, 525 |
| MboII | GAAGA | 6 cut(s) | 67, 215, 384, 458, 528, 576 |
| MfeI | CAATTG | 1 cut(s) | 612 |
| MluCI | AATT | 4 cut(s) | 10, 28, 357, 612 |
| MlyI | GAGTC | 2 cut(s) | 193, 417 |
| MmeI | TCCRAC | 1 cut(s) | 554 |
| MnlI | CCTC | 4 cut(s) | 129, 199, 628, 653 |
| MseI | TTAA | 2 cut(s) | 87, 712 |
| MslI | CAYNNNNRTG | 2 cut(s) | 329, 625 |
| MspR9I | CCNGG | 2 cut(s) | 300, 678 |
| MunI | CAATTG | 1 cut(s) | 612 |
| Mva1269I | GAATGC | 1 cut(s) | 287 |
| MvaI | CCWGG | 2 cut(s) | 300, 678 |
| MvnI | CGCG | 1 cut(s) | 436 |
| NdeII | GATC | 2 cut(s) | 273, 525 |
| NlaIII | CATG | 5 cut(s) | 149, 274, 334, 523, 563 |
| NmuCI | GTSAC | 1 cut(s) | 185 |
| NspI | RCATGY | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 145 |
| PctI | GAATGC | 1 cut(s) | 287 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 705 |
| PkrI | GCNGC | 2 cut(s) | 283, 286 |
| PleI | GAGTC | 2 cut(s) | 192, 417 |
| PpsI | GAGTC | 2 cut(s) | 192, 417 |
| PscI | ACATGT | 1 cut(s) | 145 |
| PsiI | TTATAA | 1 cut(s) | 27 |
| Psp6I | CCWGG | 2 cut(s) | 298, 676 |
| PspGI | CCWGG | 2 cut(s) | 298, 676 |
| PspPI | GGNCC | 1 cut(s) | 674 |
| PstNI | CAGNNNCTG | 1 cut(s) | 299 |
| RsaI | GTAC | 1 cut(s) | 244 |
| RsaNI | GTAC | 1 cut(s) | 243 |
| RseI | CAYNNNNRTG | 2 cut(s) | 329, 625 |
| SaqAI | TTAA | 2 cut(s) | 87, 712 |
| SatI | GCNGC | 2 cut(s) | 282, 285 |
| Sau3AI | GATC | 2 cut(s) | 273, 525 |
| Sau96I | GGNCC | 1 cut(s) | 674 |
| SchI | GAGTC | 2 cut(s) | 193, 417 |
| ScrFI | CCNGG | 2 cut(s) | 300, 678 |
| SetI | ASST | 4 cut(s) | 129, 166, 256, 706 |
| SfaNI | GCATC | 1 cut(s) | 333 |
| SfcI | CTRYAG | 1 cut(s) | 136 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 329, 625 |
| Sse9I | AATT | 4 cut(s) | 10, 28, 357, 612 |
| SsiI | CCGC | 1 cut(s) | 282 |
| SspI | AATATT | 1 cut(s) | 684 |
| SspMI | CTAG | 1 cut(s) | 471 |
| StyD4I | CCNGG | 2 cut(s) | 298, 676 |
| StyI | CCWWGG | 1 cut(s) | 704 |
| TaaI | ACNGT | 3 cut(s) | 247, 295, 572 |
| TasI | AATT | 4 cut(s) | 10, 28, 357, 612 |
| TatI | WGTACW | 1 cut(s) | 242 |
| TauI | GCSGC | 1 cut(s) | 284 |
| Tru1I | TTAA | 2 cut(s) | 87, 712 |
| Tru9I | TTAA | 2 cut(s) | 87, 712 |
| TscAI | CASTG | 2 cut(s) | 225, 411 |
| TseFI | GTSAC | 1 cut(s) | 185 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 1 cut(s) | 185 |
| TspDTI | ATGAA | 6 cut(s) | 17, 105, 325, 493, 548, 649 |
| TspGWI | ACGGA | 1 cut(s) | 72 |
| TspRI | CASTG | 2 cut(s) | 225, 411 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 705 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XspI | CTAG | 1 cut(s) | 471 |